Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "computational" keyword
probnode 0.2.4
Probability expression library14 versions - Latest release: about 2 years ago - 1 dependent repositories - 84 downloads last month - 3 stars on GitHub - 1 maintainer
actonet 1.0
Abduction-based control of Boolean networks fixpoints2 versions - Latest release: almost 4 years ago - 20 downloads last month - 1 maintainer
visinum 0.1.1
Project to improve engineering computational productivity.1 version - Latest release: about 6 years ago - 1 dependent repositories - 8 downloads last month - 0 stars on GitHub - 1 maintainer
bhv 1.4.1
Boolean Hypervectors51 versions - Latest release: 6 months ago - 145 downloads last month - 16 stars on GitHub - 1 maintainer
gmisclib 0.73.0
Various Python Libraries, mostly scientific purposes15 versions - Latest release: about 13 years ago - 2 dependent repositories - 40 downloads last month - 1 maintainer
parc-reader 0.1.5
Work with the PARC dataset in Python15 versions - Latest release: about 6 years ago - 1 dependent repositories - 49 downloads last month - 2 stars on GitHub - 1 maintainer
cgat 0.7.2
cgat : the Computational Genomics Analysis Toolkit35 versions - Latest release: 2 months ago - 164 downloads last month - 3 maintainers
barcodex 1.0.9
A tool for extracting Unique Molecular Identifiers (UMIs) from single or paired-e...6 versions - Latest release: over 3 years ago - 40 downloads last month - 0 stars on GitHub - 1 maintainer
Top 9.5% on pypi.org
15 versions - Latest release: over 8 years ago - 5 dependent repositories - 119 downloads last month - 1 maintainer
sumatra 0.7.4
A tool for automated tracking of computation-based scientific projects15 versions - Latest release: over 8 years ago - 5 dependent repositories - 119 downloads last month - 1 maintainer
nrnutils 0.3.0
Some tools for use with the NEURON simulator (http://www.neuron.yale.edu/neuron/)4 versions - Latest release: about 1 year ago - 1 dependent package - 2 dependent repositories - 30 downloads last month - 0 stars on GitHub - 1 maintainer
brat-reader 0.0.0
Work with the PARC dataset in Python1 version - Latest release: about 6 years ago - 1 dependent repositories - 13 downloads last month - 0 stars on GitHub - 1 maintainer
neurodynamics 0.1.1
NeuroDynamics: A Just-In-Time compilation approach for neuronal dynamics simulation.1 version - Latest release: over 3 years ago - 1 dependent repositories - 6 downloads last month - 483 stars on GitHub - 1 maintainer
npbrain 0.3.0
NumpyBrain: A Just-In-Time compilation approach for neuronal dynamics simulation.18 versions - Latest release: over 3 years ago - 1 dependent repositories - 36 downloads last month - 483 stars on GitHub - 1 maintainer
trnanalysis 0.1.10
tRNAnalysis : this software will perform alignment of reads to tRNA8 versions - Latest release: over 4 years ago - 1 dependent repositories - 69 downloads last month - 2 stars on GitHub - 1 maintainer
pypynum 1.8.2
A multifunctional mathematical calculation package written in pure Python programming language [P...21 versions - Latest release: about 1 month ago - 198 downloads last month - 3 stars on GitHub - 1 maintainer
Top 8.8% on pypi.org
4 versions - Latest release: about 4 years ago - 1 dependent package - 5 dependent repositories - 896 downloads last month - 12 stars on GitHub - 1 maintainer
csa 0.1.12
The Connection-Set Algebra implemented in Python4 versions - Latest release: about 4 years ago - 1 dependent package - 5 dependent repositories - 896 downloads last month - 12 stars on GitHub - 1 maintainer
fastgrouper 0.1.2
A package for applying efficient groupby operations.2 versions - Latest release: about 2 years ago - 1 dependent repositories - 17 downloads last month - 1 stars on GitHub - 1 maintainer
de9im 0.1
Dimensionally Extended 9-Intersections Matrix utilities1 version - Latest release: about 14 years ago - 2 dependent repositories - 16 downloads last month - 1 maintainer
eptlsoot2 1.0.1
Soot model from EPTL group5 versions - Latest release: over 1 year ago - 61 downloads last month - 1 maintainer
Top 9.9% on pypi.org
32 versions - Latest release: 2 months ago - 2 dependent packages - 8 dependent repositories - 217 downloads last month - 31 stars on GitHub - 2 maintainers
cgatcore 0.6.16
cgatcore : the Computational Genomics Analysis Toolkit32 versions - Latest release: 2 months ago - 2 dependent packages - 8 dependent repositories - 217 downloads last month - 31 stars on GitHub - 2 maintainers
cabean 1.0
Python interface to CABEAN, A Software Tool for the Control of Asynchronous Boolean Networks2 versions - Latest release: almost 4 years ago - 15 downloads last month - 2 stars on GitHub - 1 maintainer
nrpcalc 1.6.3
Non-Repetitive Parts Calculator - Automated design and discovery of non-repetitive genetic parts ...2 versions - Latest release: almost 3 years ago - 1 dependent repositories - 9 downloads last month - 6 stars on GitHub - 2 maintainers
omnisoot 0.1.11
a computational tool for modeling soot11 versions - Latest release: 3 months ago - 454 downloads last month - 1 maintainer
cheminftools 0.1.4
A collection of tools for daily cheminformatics tasks.5 versions - Latest release: about 1 year ago - 26 downloads last month - 4 stars on GitHub - 1 maintainer
eptlsoot 0.0.9
Soot model from EPTL group7 versions - Latest release: about 1 year ago - 203 downloads last month - 1 maintainer
corenlp-xml-reader 0.1.3
Work with CoreNLP annotations in Python14 versions - Latest release: almost 7 years ago - 5 dependent repositories - 35 downloads last month - 6 stars on GitHub - 1 maintainer
dfpy 0.1.0
DFPy: A backend-free numerical integration library for differential equations1 version - Latest release: over 3 years ago - 1 dependent repositories - 21 downloads last month - 468 stars on GitHub - 1 maintainer
scikit-brain 0.3.3
BrainPy: A Toolbox for Computational Neuroscience Study and Research1 version - Latest release: over 3 years ago - 1 dependent repositories - 11 downloads last month - 458 stars on GitHub - 1 maintainer
vtt 0.3.1
Variable Trigonometric Threshold (VTT)2 versions - Latest release: almost 8 years ago - 2 dependent repositories - 56 downloads last month - 2 stars on GitHub - 1 maintainer
stablemotifs 1.0
Python interface to StableMotifs2 versions - Latest release: almost 4 years ago - 1 dependent repositories - 19 downloads last month - 0 stars on GitHub - 1 maintainer
dynamicspy 0.1.0
DynamicsPy: A backend-free numerical integration software for differential equations1 version - Latest release: over 3 years ago - 1 dependent repositories - 10 downloads last month - 483 stars on GitHub - 1 maintainer
faultmaplib 0.0.1
FaultMap library1 version - Latest release: over 3 years ago - 1 dependent repositories - 10 downloads last month - 1 maintainer
fangnao 0.1.0
FangNao: A Just-In-Time compilation approach for neuronal dynamics simulation.1 version - Latest release: over 3 years ago - 1 dependent repositories - 9 downloads last month - 483 stars on GitHub - 1 maintainer
latentcor 0.2.5
Fast Computation of Latent Correlations for Mixed Data6 versions - Latest release: 7 months ago - 1 dependent repositories - 30 downloads last month - 7 stars on GitHub - 1 maintainer
classic-stemmer 0.1
Implementation of Porter Stemmer algorithm (M.F Porter 1980)1 version - Latest release: over 4 years ago - 1 dependent repositories - 13 downloads last month - 0 stars on GitHub - 1 maintainer
cana 0.2.0
This package implements a series of methods used to study control, canalization and redundancy in...8 versions - Latest release: about 1 year ago - 59 downloads last month - 21 stars on GitHub - 3 maintainers
chemfiles 0.10.4
Read and write computational chemistry files9 versions - Latest release: about 1 year ago - 3 dependent packages - 3 dependent repositories - 1.32 thousand downloads last month - 3 stars on GitHub - 1 maintainer
emergic 0.1
Emergic Network1 version - Latest release: over 7 years ago - 1 dependent repositories - 8 downloads last month - 0 stars on GitHub - 1 maintainer
scflow 0.0.1
scflow : cribbslab single cell pipeline1 version - Latest release: over 4 years ago - 1 dependent repositories - 12 downloads last month - 2 maintainers
Top 10.0% on pypi.org
12 versions - Latest release: 2 months ago - 1 dependent package - 2 dependent repositories - 187 downloads last month - 1 maintainer
bonesis 0.6.5
Synthesis of Most Permissive Boolean Networks12 versions - Latest release: 2 months ago - 1 dependent package - 2 dependent repositories - 187 downloads last month - 1 maintainer
boolsim 0.5
Python interface to boolSim1 version - Latest release: almost 4 years ago - 1 dependent repositories - 16 downloads last month - 0 stars on GitHub - 1 maintainer
streamm 0.3.2
The Simulation Toolkit for Renewable Energy and Advanced Materials Modeling (STREAMM)1 version - Latest release: over 6 years ago - 1 dependent repositories - 9 downloads last month - 1 maintainer
strucscan 0.post0.dev68
Lightweight Python-based framework for high-throughput material simulation by ICAMS, Ruhr Univers...1 version - Latest release: almost 2 years ago - 10 downloads last month - 6 stars on GitHub - 1 maintainer
wesci 0.6.2
We-Sci's seamless python toolset for tracking and managing research data19 versions - Latest release: over 6 years ago - 1 dependent repositories - 91 downloads last month - 1 stars on GitHub - 1 maintainer
Top 4.4% on pypi.org
31 versions - Latest release: 4 months ago - 5 dependent packages - 13 dependent repositories - 1.59 thousand downloads last month - 262 stars on GitHub - 6 maintainers
freud-analysis 3.0.0
Powerful, efficient trajectory analysis in scientific Python.31 versions - Latest release: 4 months ago - 5 dependent packages - 13 dependent repositories - 1.59 thousand downloads last month - 262 stars on GitHub - 6 maintainers
adcc 0.15.17
adcc: Seamlessly connect your host program to ADC26 versions - Latest release: about 1 year ago - 1 dependent repositories - 108 downloads last month - 30 stars on GitHub - 1 maintainer
wc-onto 0.0.2
Ontology for whole-cell modeling1 version - Latest release: about 4 years ago - 1 dependent repositories - 29 downloads last month - 1 stars on GitHub - 2 maintainers
ginsim 0.4.4
Python interface to GINsim and BioLQM API10 versions - Latest release: almost 3 years ago - 5 dependent repositories - 198 downloads last month - 3 stars on GitHub - 1 maintainer
pdipy 0.0.5
Simulate Photodynamic Inactivation (PDI) of from a kinetics model of membrane oxidation.5 versions - Latest release: about 2 years ago - 1 dependent repositories - 23 downloads last month - 1 stars on GitHub - 1 maintainer
wc-model-gen 0.0.1
Framework for systematically and scalably designing whole-cell models from large datasets such as...1 version - Latest release: 10 months ago - 1 dependent repositories - 5 stars on GitHub - 2 maintainers
parse-fmt 0.5.2
A Python parser for CASTEP fmt files (densities, potentials etc.)3 versions - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 94 downloads last month - 0 stars on GitHub - 1 maintainer
scip-workflows 0.1.2
3 versions - Latest release: over 1 year ago - 18 downloads last month - 1 maintainercandiy-lemon 0.3.0
Mine data from the PDB in minutes3 versions - Latest release: about 4 years ago - 1 dependent repositories - 37 downloads last month - 51 stars on GitHub - 1 maintainer
nanpack 1.0.0a4
A package of scientific computing tools for learning and teaching.4 versions - Latest release: over 3 years ago - 1 dependent repositories - 39 downloads last month - 12 stars on GitHub - 1 maintainer
pdover2t 0.0.2
Computational subsea pipeline engineering.2 versions - Latest release: over 4 years ago - 1 dependent repositories - 18 downloads last month - 2 stars on GitHub - 1 maintainer
mtree 0.3b12
This is the base mTree package12 versions - Latest release: almost 6 years ago - 1 dependent repositories - 31 downloads last month - 5 stars on GitHub - 1 maintainer
pycontact 1.0.4
PyContact2 versions - Latest release: almost 4 years ago - 1 dependent repositories - 66 downloads last month - 42 stars on GitHub - 1 maintainer
pflacs 0.2.0
Faster load-cases and parameter studies.2 versions - Latest release: over 4 years ago - 1 dependent repositories - 16 downloads last month - 0 stars on GitHub - 1 maintainer
brian2modelfitting 0.4
Modelfitting Toolbox for the Brian 2 simulator3 versions - Latest release: almost 4 years ago - 1 dependent repositories - 39 downloads last month - 14 stars on GitHub - 3 maintainers
ruts 0.8.1
Russian Texts Statistics10 versions - Latest release: almost 2 years ago - 1 dependent repositories - 112 downloads last month - 103 stars on GitHub - 1 maintainer
chemfunc 1.0.5
Chem Func7 versions - Latest release: 5 months ago - 262 downloads last month - 24 stars on GitHub - 1 maintainer
smmips 1.0.9
A package to generate QC metrics for smMIP libraries10 versions - Latest release: about 3 years ago - 1 dependent repositories - 33 downloads last month - 0 stars on GitHub - 1 maintainer
tcga 0.0.22
Computational biology & bioinformatics utils20 versions - Latest release: about 3 years ago - 1 dependent repositories - 150 downloads last month - 3 stars on GitHub - 1 maintainer
Top 8.8% on pypi.org
13 versions - Latest release: 5 months ago - 1 dependent package - 7 dependent repositories - 1.89 thousand downloads last month - 14 stars on GitHub - 1 maintainer
odetoolbox 2.5.5
ODE-toolbox: Automatic selection and generation of integration schemes for systems of ordinary di...13 versions - Latest release: 5 months ago - 1 dependent package - 7 dependent repositories - 1.89 thousand downloads last month - 14 stars on GitHub - 1 maintainer
musica-toolkit 0.1.0
Musica is a free and open source computational music toolkit written in Python covering several t...1 version - Latest release: over 6 years ago - 1 dependent repositories - 9 downloads last month - 1 stars on GitHub - 1 maintainer
hbayesdm 1.1.1
Python interface for hBayesDM, hierarchical Bayesian modeling of RL-DM tasks7 versions - Latest release: about 3 years ago - 1 dependent repositories - 39 downloads last month - 212 stars on GitHub - 2 maintainers
wc-test 0.0.1
Methods for testing whole-cell knowledge bases and models1 version - Latest release: 10 months ago - 1 dependent repositories - 0 stars on GitHub - 2 maintainers
aarontools 1.0b19
Tools for measuring and manipulating molecular structures19 versions - Latest release: about 1 year ago - 1 dependent repositories - 262 downloads last month - 36 stars on GitHub - 1 maintainer
cppe 0.3.1
C++ and Python library for Polarizable Embedding2 versions - Latest release: over 3 years ago - 1 dependent package - 1 dependent repositories - 300 downloads last month - 20 stars on GitHub - 1 maintainer
pype9 0.2
PYthon PipelinEs for 9ML (Pype9) is a collection of Python pipelines for simulating networks of n...2 versions - Latest release: over 6 years ago - 1 dependent repositories - 19 downloads last month - 3 stars on GitHub - 1 maintainer
spike-count-models 0.1
A multitude of statistical tests, copulas and marginal distribution with functions for fitting da...1 version - Latest release: almost 13 years ago - 1 dependent repositories - 5 downloads last month - 1 maintainer
nineml 1.0.1
A tool for reading, writing and generally working with 9ML objects and files.5 versions - Latest release: over 5 years ago - 4 dependent repositories - 53 downloads last month - 14 stars on GitHub - 1 maintainer
mozaik 0.1.0
Python package mozaik is an integrated workflow framework for large scale neural simulations.1 version - Latest release: over 10 years ago - 4 dependent repositories - 9 downloads last month - 16 stars on GitHub - 1 maintainer
bpmodels 0.2.3
BrainPy-Models: An example package accompany with BrainPy.4 versions - Latest release: over 3 years ago - 32 downloads last month - 46 stars on GitHub - 1 maintainer
Top 10.0% on pypi.org
7 versions - Latest release: 9 months ago - 7 dependent packages - 3 dependent repositories - 2.9 thousand downloads last month - 270 stars on GitHub - 2 maintainers
viennarna 2.6.4
A library for the prediction and comparison of RNA secondary structures.7 versions - Latest release: 9 months ago - 7 dependent packages - 3 dependent repositories - 2.9 thousand downloads last month - 270 stars on GitHub - 2 maintainers
integral 0.1.0
Integral: A backend-free numerical integration library for differential equations1 version - Latest release: over 3 years ago - 3 dependent repositories - 73 downloads last month - 482 stars on GitHub - 1 maintainer
wc-cli 0.0.1
Whole-cell models and whole-cell modeling tools1 version - Latest release: 10 months ago - 1 dependent repositories - 0 stars on GitHub - 2 maintainers
wc-env-manager 0.0.1
Tools for managing computing environments for whole-cell modeling1 version - Latest release: 10 months ago - 1 dependent repositories - 0 stars on GitHub - 2 maintainers
pyrepro 0.1dev
Event based reproducible records manager.1 version - Latest release: 10 months ago - 1 dependent repositories - 1 maintainer
httk 1.2.0
The high-thoughput toolkit: workflow, project management, storage, and data analysis for large-sc...2 versions - Latest release: over 3 years ago - 1 dependent repositories - 20 downloads last month - 12 stars on GitHub - 1 maintainer
ligpargen 2.1
Python script to provide BOSS generated OPLS-AA/CM1A(-LBCC) parameters for organic molecules and ...6 versions - Latest release: over 6 years ago - 1 dependent repositories - 43 downloads last month - 2 maintainers
navicat-mikimo 1.0.0
microkinetic modeling code for homogeneous catalytic reactions1 version - Latest release: 9 months ago - 12 downloads last month - 5 stars on GitHub - 1 maintainer
visgraph 0.0.9
Visgraph API allows the user to interface with a visgraph session using python scripts.9 versions - Latest release: over 1 year ago - 86 downloads last month - 1 maintainer
compmech 0.8.0
CompMech: Computational Mechanics in Python7 versions - Latest release: 7 months ago - 2 dependent repositories - 146 downloads last month - 7 stars on GitHub - 1 maintainer
reacnet 0.0.1
a tool for building reactor network based on omnisoot and Cantera1 version - Latest release: about 2 months ago - 153 downloads last month - 1 maintainer
bioprot 0.2.0
A package for DNA, RNA and protein sequence manipulation1 version - Latest release: 24 days ago - 0 stars on GitHub
camprot 0.0.13
camprot: Tools for Computational proteomics10 versions - Latest release: about 7 years ago - 1 dependent repositories - 51 downloads last month - 0 stars on GitHub - 1 maintainer
Top 4.8% on pypi.org
33 versions - Latest release: over 5 years ago - 6 dependent packages - 25 dependent repositories - 1.49 thousand downloads last month - 99 stars on GitHub - 1 maintainer
pyhull 2015.2.1
A Python wrapper to Qhull (http://www.qhull.org/) for the computation of the convex hull, Delauna...33 versions - Latest release: over 5 years ago - 6 dependent packages - 25 dependent repositories - 1.49 thousand downloads last month - 99 stars on GitHub - 1 maintainer
Top 7.5% on pypi.org
8 versions - Latest release: over 2 years ago - 3 dependent repositories - 294 downloads last month - 429 stars on GitHub - 2 maintainers
pysph 1.0b1
A general purpose Smoothed Particle Hydrodynamics framework8 versions - Latest release: over 2 years ago - 3 dependent repositories - 294 downloads last month - 429 stars on GitHub - 2 maintainers
umi-tools-csgx 1.1.1
umi_tools: Tools for UMI analyses1 version - Latest release: over 2 years ago - 1 dependent repositories - 21 downloads last month - 462 stars on GitHub - 1 maintainer
Top 3.8% on pypi.org
39 versions - Latest release: over 1 year ago - 4 dependent packages - 5 dependent repositories - 2.15 thousand downloads last month - 461 stars on GitHub - 2 maintainers
umi-tools 1.1.4
umi_tools: Tools for UMI analyses39 versions - Latest release: over 1 year ago - 4 dependent packages - 5 dependent repositories - 2.15 thousand downloads last month - 461 stars on GitHub - 2 maintainers
reaction-network 8.3.0
Reaction-network is a Python package for synthesis planning and predicting chemical reaction path...28 versions - Latest release: 3 months ago - 2 dependent repositories - 376 downloads last month - 69 stars on GitHub - 2 maintainers
ichor 1.0.0
File Reading for different CC inputs files.1 version - Latest release: 6 months ago - 9 downloads last month - 0 stars on GitHub - 1 maintainer
Top 6.0% on pypi.org
4 versions - Latest release: about 5 years ago - 2 dependent packages - 9 dependent repositories - 4.95 thousand downloads last month - 60 stars on GitHub - 1 maintainer
tripy 1.0.0
Simple polygon triangulation4 versions - Latest release: about 5 years ago - 2 dependent packages - 9 dependent repositories - 4.95 thousand downloads last month - 60 stars on GitHub - 1 maintainer
pycg3d 0.0.1
A pure Python package for Computational Geometry in 3D1 version - Latest release: over 7 years ago - 1 dependent repositories - 12 downloads last month - 0 stars on GitHub - 1 maintainer
propeller-design-tools 0.4.7 removed
Python 3.7 package that provides exactly what it sounds like by automating usage of MIT professor...75 versions - Latest release: 12 months ago - 1 dependent repositories - 1.79 thousand downloads last month - 1 maintainer
ninemlcatalog 0.1.2
A collection of 9ML models and basic Python functions for accessing them4 versions - Latest release: over 6 years ago - 1 dependent repositories - 55 downloads last month - 1 maintainer
lib99ocl 0.0.0.dev13
OpenCL C99 library13 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 76 downloads last month - 0 stars on GitHub - 1 maintainer
labmath 2.2.0
Module for basic math in the general vicinity of computational number theory12 versions - Latest release: over 2 years ago - 1 dependent repositories - 40 downloads last month - 23 stars on GitHub - 1 maintainer
debarcer 2.1.4
A package for de-barcoding and error correction of sequencing data containing molecular barcodes.8 versions - Latest release: about 3 years ago - 1 dependent repositories - 86 downloads last month - 13 stars on GitHub - 2 maintainers
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