Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "contact-matrix" keyword
Top 2.1% on pypi.org
46 versions - Latest release: 9 months ago - 22 dependent packages - 64 dependent repositories - 4.28 thousand downloads last month - 191 stars on GitHub - 2 maintainers
cooler 0.9.3
Sparse binary format for genomic interaction matrices.46 versions - Latest release: 9 months ago - 22 dependent packages - 64 dependent repositories - 4.28 thousand downloads last month - 191 stars on GitHub - 2 maintainers
libbiosmoother 1.5.1
On-the-fly processing of interactome data16 versions - Latest release: about 1 month ago - 1 dependent package - 1.02 thousand downloads last month - 0 stars on GitHub - 1 maintainer
stripecaller 0.1.0
Automated Stripe Identification from contact matrix.1 version - Latest release: about 4 years ago - 1 dependent repositories - 19 downloads last month - 16 stars on GitHub - 1 maintainer
coolpuppy 1.1.0
A versatile tool to perform pile-up analysis on Hi-C data in .cool format.23 versions - Latest release: 11 months ago - 1 dependent repositories - 194 downloads last month - 72 stars on GitHub - 2 maintainers
hic2cool 1.0.1
Converter between hic files (from juicer) and single-resolution or multi-resolution cool files (f...28 versions - Latest release: 7 months ago - 1 dependent package - 1 dependent repositories - 1.16 thousand downloads last month - 54 stars on GitHub - 4 maintainers
hicpeaks 0.3.7
A Python implementation for BH-FDR and HiCCUPS14 versions - Latest release: 10 months ago - 1 dependent repositories - 118 downloads last month - 38 stars on GitHub - 1 maintainer
tadlib 0.4.5
A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains21 versions - Latest release: over 1 year ago - 1 dependent repositories - 225 downloads last month - 39 stars on GitHub - 2 maintainers
Related Keywords
hi-c
7
bioinformatics
6
cooler
5
genomics
5
python
4
chromatin
4
Hi-C
3
file-format
2
contact
2
sparse-matrix
1
juicer
1
contact-matrices
1
converter
1
interaction
1
loops
1
peaks
1
TAD
1
Aggregation
1
Preference
1
tads
1
tad
1
AP
1
sub-TAD
1
hierarchy
1
pileup
1
stripes
1
stripe
1
genome
1
3D
1
radicl-seq
1
interactome-sequencing
1
grid-seq
1
data-visualization
1
ngs
1
3d-genome
1
sparse
1
matrix
1
hdf5
1
format
1