Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "ngs" keyword
rlpipes 0.9.3
A standardized R-loop-mapping pipeline4 versions - Latest release: almost 2 years ago - 1 dependent repositories - 43 downloads last month - 3 stars on GitHub - 1 maintainer
Top 1.6% on pypi.org
60 versions - Latest release: 12 days ago - 16 dependent packages - 43 dependent repositories - 19.6 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-tool-util 24.0.2
Galaxy tool and tool dependency utilities60 versions - Latest release: 12 days ago - 16 dependent packages - 43 dependent repositories - 19.6 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 1.9% on pypi.org
36 versions - Latest release: 12 days ago - 23 dependent packages - 23 dependent repositories - 19.8 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-util 24.0.2
Galaxy generic utilities36 versions - Latest release: 12 days ago - 23 dependent packages - 23 dependent repositories - 19.8 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
fastqwiper 2023.2.82
An ensamble method to recover corrupted FASTQ files, drop or fix pesky lines, remove unpaired rea...19 versions - Latest release: 7 months ago - 1 dependent repositories - 49 downloads last month - 16 stars on GitHub - 1 maintainer
rna-cd 0.2.0
RNA contamination detector2 versions - Latest release: almost 5 years ago - 1 dependent repositories - 31 downloads last month - 2 stars on GitHub - 2 maintainers
bedboss 0.2.1
Pipelines for genomic region file to produce bed files, and it's statistics6 versions - Latest release: about 1 month ago - 60 downloads last month - 1 stars on GitHub - 2 maintainers
monsda 1.2.5
MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis17 versions - Latest release: about 1 month ago - 1 dependent repositories - 152 downloads last month - 10 stars on GitHub - 1 maintainer
phageboost 0.1.7
a Fast Prophage and Phage Predictor5 versions - Latest release: over 3 years ago - 1 dependent repositories - 56 downloads last month - 32 stars on GitHub - 1 maintainer
geofetch 0.12.6
Downloads data and metadata from GEO and SRA and creates standard PEPs.22 versions - Latest release: 3 months ago - 1 dependent repositories - 444 downloads last month - 39 stars on GitHub - 3 maintainers
microhapulator 0.4.1
Software package for simulating and analyzing microhaplotype sequence data1 version - Latest release: over 4 years ago - 1 dependent repositories - 9 downloads last month - 6 stars on GitHub - 1 maintainer
htsinfer 0.2.0
HTSinfer infers metadata from High Throughput Sequencing (HTS) data1 version - Latest release: almost 4 years ago - 1 dependent repositories - 17 downloads last month - 8 stars on GitHub - 1 maintainer
Top 3.4% on pypi.org
60 versions - Latest release: 2 months ago - 6 dependent packages - 36 dependent repositories - 2.33 thousand downloads last month - 645 stars on GitHub - 3 maintainers
deeptools 3.5.5
Useful tools for exploring deep sequencing data.60 versions - Latest release: 2 months ago - 6 dependent packages - 36 dependent repositories - 2.33 thousand downloads last month - 645 stars on GitHub - 3 maintainers
pipestat 0.9.1
A pipeline results reporter36 versions - Latest release: 24 days ago - 4 dependent packages - 3 dependent repositories - 25.9 thousand downloads last month - 4 stars on GitHub - 2 maintainers
bedhost 0.2.0
A database server application that provides both a RESTful API and GUI for access to BED files an...4 versions - Latest release: 5 months ago - 65 downloads last month - 37,327 stars on GitHub - 2 maintainers
Top 7.8% on pypi.org
30 versions - Latest release: 4 months ago - 10 dependent packages - 47 dependent repositories - 38 thousand downloads last month - 7 stars on GitHub - 4 maintainers
yacman 0.9.3
A standardized configuration object for reference genome assemblies30 versions - Latest release: 4 months ago - 10 dependent packages - 47 dependent repositories - 38 thousand downloads last month - 7 stars on GitHub - 4 maintainers
svist4get 1.3.1
A simple visualization tool for genomic tracks from sequencing experiments47 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 480 downloads last month - 2 stars on GitHub - 1 maintainer
sequana-rnaseq 0.19.3
A RNAseq pipeline from raw reads to feature counts44 versions - Latest release: 3 months ago - 1 dependent repositories - 232 downloads last month - 17 stars on GitHub - 2 maintainers
sequana-pipetools 1.0.1
A set of tools to help building or using Sequana pipelines69 versions - Latest release: about 1 month ago - 1 dependent package - 2 dependent repositories - 923 downloads last month - 2 stars on GitHub - 1 maintainer
sequana-fastqc 1.8.2
A multi-sample fastqc pipeline from Sequana project35 versions - Latest release: 3 months ago - 1 dependent repositories - 275 downloads last month - 3 stars on GitHub - 1 maintainer
seq-ann 1.1.0
Sequence Annotation3 versions - Latest release: over 4 years ago - 1 dependent package - 4 dependent repositories - 45 downloads last month - 5 stars on GitHub - 1 maintainer
pipestat-reader 0.0.3
A generator of pipestat-based APIs2 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 20 downloads last month - 0 stars on GitHub - 2 maintainers
Top 4.7% on pypi.org
58 versions - Latest release: 4 months ago - 9 dependent packages - 25 dependent repositories - 14.9 thousand downloads last month - 35 stars on GitHub - 4 maintainers
peppy 0.40.1
A python-based project metadata manager for portable encapsulated projects58 versions - Latest release: 4 months ago - 9 dependent packages - 25 dependent repositories - 14.9 thousand downloads last month - 35 stars on GitHub - 4 maintainers
Top 7.0% on pypi.org
11 versions - Latest release: 26 days ago - 3 dependent packages - 4 dependent repositories - 322 downloads last month - 87 stars on GitHub - 2 maintainers
pairtools 1.1.0
CLI tools to process mapped Hi-C data11 versions - Latest release: 26 days ago - 3 dependent packages - 4 dependent repositories - 322 downloads last month - 87 stars on GitHub - 2 maintainers
geniml 0.3.0
Genomic interval toolkit3 versions - Latest release: about 1 month ago - 3 dependent packages - 388 downloads last month - 2 maintainers
Top 5.1% on pypi.org
18 versions - Latest release: 12 days ago - 5 dependent packages - 10 dependent repositories - 437 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-web-stack 24.0.2
Galaxy web stack abstraction18 versions - Latest release: 12 days ago - 5 dependent packages - 10 dependent repositories - 437 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-web-apps 24.0.2
Galaxy web apps15 versions - Latest release: 12 days ago - 2 dependent packages - 1 dependent repositories - 233 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 4.9% on pypi.org
24 versions - Latest release: 12 days ago - 9 dependent packages - 13 dependent repositories - 782 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-data 24.0.2
Galaxy datatype framework and datatypes24 versions - Latest release: 12 days ago - 9 dependent packages - 13 dependent repositories - 782 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 2.1% on pypi.org
45 versions - Latest release: 8 months ago - 22 dependent packages - 64 dependent repositories - 3.6 thousand downloads last month - 189 stars on GitHub - 2 maintainers
cooler 0.9.3
Sparse binary format for genomic interaction matrices.45 versions - Latest release: 8 months ago - 22 dependent packages - 64 dependent repositories - 3.6 thousand downloads last month - 189 stars on GitHub - 2 maintainers
bioconvert 1.1.1
convert between bioinformatics formats32 versions - Latest release: 10 months ago - 1 dependent package - 1 dependent repositories - 231 downloads last month - 350 stars on GitHub - 1 maintainer
cutseq 0.0.34 💰
Automatically cut adapter / barcode / UMI from NGS data34 versions - Latest release: 17 days ago - 2.34 thousand downloads last month - 3 stars on GitHub - 1 maintainer
vfind 0.1.0
A simple variant finder for NGS data1 version - Latest release: about 1 month ago - 84 downloads last month - 1 stars on GitHub - 1 maintainer
galaxy-tool-shed 24.0.2
Galaxy auth framework and implementations4 versions - Latest release: 12 days ago - 102 downloads last month - 1,315 stars on GitHub - 1 maintainer
galaxy-schema 24.0.2
Galaxy auth framework and implementations4 versions - Latest release: 12 days ago - 111 downloads last month - 1,315 stars on GitHub - 1 maintainer
galaxy-tours 24.0.2
Galaxy tours backend framework15 versions - Latest release: 12 days ago - 1 dependent package - 362 downloads last month - 1,315 stars on GitHub - 1 maintainer
galaxy-navigation 24.0.2
Galaxy client DOM navigation framework15 versions - Latest release: 12 days ago - 2 dependent packages - 417 downloads last month - 1,315 stars on GitHub - 1 maintainer
monte-barcode 0.0.2
Generating sets of random DNA sequences optimized for use in high-throughput sequencing.3 versions - Latest release: 12 months ago - 32 downloads last month - 0 stars on GitHub - 1 maintainer
oxbow 0.3.1
Read specialized bioinformatic file formats into dataframes.4 versions - Latest release: 4 months ago - 1 dependent package - 1 dependent repositories - 913 downloads last month - 39 stars on GitHub - 3 maintainers
strkit-rust-ext 0.10.0
A short tandem repeat (STR) genotyping and analysis toolkit for long reads10 versions - Latest release: 3 months ago - 1 dependent package - 726 downloads last month - 2 stars on GitHub - 1 maintainer
zarp 0.1.1 removed
User-friendly command-line interface for the ZARP RNA-Seq analysis pipeline1 version - Latest release: over 1 year ago - 1 maintainer
markmeld 0.3.0
Markmeld is a markup melder that combines structured yaml or markdown data into templated markdow...4 versions - Latest release: 6 months ago - 1 dependent repositories - 32 downloads last month - 2 maintainers
sigalign 0.2.0
SigAlign's language binding for python2 versions - Latest release: 11 months ago - 51 downloads last month - 10 stars on GitHub - 1 maintainer
pydemux 1.0.1
Python package for demultiplexing raw sequencing reads in SAM/BAM format2 versions - Latest release: over 1 year ago - 22 downloads last month - 0 stars on GitHub - 1 maintainer
tecount 1.0.1
Count read alignments on transposable elements subfamilies, families and classes.5 versions - Latest release: over 1 year ago - 40 downloads last month - 5 stars on GitHub - 1 maintainer
Top 5.4% on pypi.org
16 versions - Latest release: 12 days ago - 4 dependent packages - 6 dependent repositories - 499 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-files 24.0.2
Galaxy file source framework and default plugins16 versions - Latest release: 12 days ago - 4 dependent packages - 6 dependent repositories - 499 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 6.1% on pypi.org
16 versions - Latest release: 12 days ago - 3 dependent packages - 3 dependent repositories - 393 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-config 24.0.2
Galaxy configuration16 versions - Latest release: 12 days ago - 3 dependent packages - 3 dependent repositories - 393 downloads last month - 1,315 stars on GitHub - 3 maintainers
vcfwiper 2021.1.4
A package to wipe out uncompliant VCF files1 version - Latest release: almost 3 years ago - 1 dependent repositories - 6 downloads last month - 1 maintainer
vcf2variants 1.3
A python tool to convert vcf to varda variant files.7 versions - Latest release: 4 months ago - 1 dependent repositories - 35 downloads last month - 2 stars on GitHub - 1 maintainer
solida 0.9.7
NGS pipelines bootstrapper23 versions - Latest release: over 3 years ago - 1 dependent repositories - 147 downloads last month - 4 stars on GitHub - 1 maintainer
sequana-pacbio-qc 1.0.1
QC on various type of pacbio data5 versions - Latest release: 11 months ago - 1 dependent repositories - 15 downloads last month - 139 stars on GitHub - 1 maintainer
seqm 0.1.0
Utilities for calculating sequence metrics.4 versions - Latest release: about 3 years ago - 1 dependent repositories - 51 downloads last month - 0 stars on GitHub - 1 maintainer
seqann 1.0.0
Sequence Annotation44 versions - Latest release: over 5 years ago - 1 dependent package - 1 dependent repositories - 203 downloads last month - 5 stars on GitHub - 1 maintainer
samsift 0.2.5
SAMsift - sift your alignments6 versions - Latest release: about 6 years ago - 1 dependent repositories - 55 downloads last month - 21 stars on GitHub - 1 maintainer
rnftools 0.3.0
RNF framework for NGS: simulation of reads, evaluation of mappers, conversion of RNF-compliant data.19 versions - Latest release: about 7 years ago - 1 dependent repositories - 76 downloads last month - 14 stars on GitHub - 1 maintainer
riboplot 0.3.1 💰
Plot read counts of RiboSeq data from BAM format alignment files11 versions - Latest release: about 7 years ago - 4 dependent repositories - 106 downloads last month - 4 stars on GitHub - 1 maintainer
rgt 1.0.2
Toolkit to perform regulatory genomics data analysis30 versions - Latest release: 10 months ago - 1 dependent repositories - 134 downloads last month - 100 stars on GitHub - 3 maintainers
refgenieserver 0.7.0
This server provides both a web interface and a RESTful API. Users may explore and download archi...15 versions - Latest release: about 3 years ago - 1 dependent repositories - 43 downloads last month - 3 maintainers
referenceseeker 1.8.0
ReferenceSeeker: rapid determination of appropriate reference genomes.12 versions - Latest release: over 2 years ago - 1 dependent repositories - 130 downloads last month - 85 stars on GitHub - 1 maintainer
raisin.restyler 1.3
A package used in the Raisin web application2 versions - Latest release: over 11 years ago - 2 dependent repositories - 3 downloads last month - 1 maintainer
raisin.recipe.load 1.1.2
A Buildout recipe for loading data into the Raisin data warehouse1 version - Latest release: over 11 years ago - 2 dependent repositories - 9 downloads last month - 1 maintainer
raisin.recipe.extract 1.1.3
A Buildout recipe for loading data into the Raisin data warehouse2 versions - Latest release: over 11 years ago - 2 dependent repositories - 11 downloads last month - 1 maintainer
raisin.box 1.4
A package used in the Raisin web application2 versions - Latest release: over 11 years ago - 2 dependent repositories - 8 downloads last month - 0 stars on GitHub - 1 maintainer
raisin.page 1.3
A package used in the Raisin web application1 version - Latest release: over 11 years ago - 2 dependent repositories - 7 downloads last month - 1 maintainer
pytest-ngsfixtures 0.8.1
pytest ngs fixtures12 versions - Latest release: over 4 years ago - 2 dependent repositories - 120 downloads last month - 7 stars on GitHub - 1 maintainer
pygvcf2coverage 0.2
A python tool to extract coverage from gvcf files.2 versions - Latest release: about 4 years ago - 1 dependent repositories - 13 downloads last month - 2 stars on GitHub - 1 maintainer
pygtftk 1.6.2
The Python GTF toolkit (pygtftk) package: easy handling of GTF files26 versions - Latest release: about 2 years ago - 1 dependent repositories - 411 downloads last month - 41 stars on GitHub - 1 maintainer
pyflagstats 0.1.4
Efficient subroutines for computing summary statistics for the SAM FLAG field5 versions - Latest release: over 4 years ago - 1 dependent repositories - 24 downloads last month - 15 stars on GitHub - 1 maintainer
pyconfdict 0.0.1.dev3
Python configuration dictionary1 version - Latest release: over 8 years ago - 1 dependent repositories - 11 downloads last month - 14 stars on GitHub - 1 maintainer
pathogentrack 0.2.3
A pipeline to identify pathogenic microorganisms from scRNA-seq raw data1 version - Latest release: over 2 years ago - 1 dependent repositories - 23 downloads last month - 24 stars on GitHub - 1 maintainer
pararead 0.7.0
Parallel processing of sequencing reads4 versions - Latest release: almost 5 years ago - 1 dependent package - 3 dependent repositories - 117 downloads last month - 8 stars on GitHub - 4 maintainers
palos 0.1.37
Misc Python modules developed and used by the yfish group56 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 259 downloads last month - 0 stars on GitHub - 1 maintainer
ore 0.2.1
Associate outliers with rare variation34 versions - Latest release: over 5 years ago - 1 dependent repositories - 257 downloads last month - 1 stars on GitHub - 1 maintainer
ngs-toolkit 0.25.1
A toolkit for NGS analysis with Python.31 versions - Latest release: over 3 years ago - 1 dependent repositories - 170 downloads last month - 13 stars on GitHub - 1 maintainer
ngs-test-utils 0.0.5
Utilities for generation of synthetic NGS files5 versions - Latest release: almost 4 years ago - 1 dependent repositories - 47 downloads last month - 0 stars on GitHub - 4 maintainers
ngsci 0.0.1
The Next Generation Sequencing Complexity Index1 version - Latest release: over 3 years ago - 1 dependent repositories - 9 downloads last month - 0 stars on GitHub - 1 maintainer
ngsderive 4.0.0
Forensic analysis tool useful in backwards computing information from next-generation sequencing ...24 versions - Latest release: 8 months ago - 1 dependent repositories - 172 downloads last month - 11 stars on GitHub - 1 maintainer
nanosim-h 1.1.0.4
NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.5 versions - Latest release: almost 6 years ago - 1 dependent repositories - 33 downloads last month - 16 stars on GitHub - 1 maintainer
murphy 0.1
Generic tools to identify overlapping genomic regions1 version - Latest release: almost 7 years ago - 1 dependent repositories - 8 downloads last month - 0 stars on GitHub - 1 maintainer
mtags 1.0.4
mTAGs - taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA gene.2 versions - Latest release: over 2 years ago - 1 dependent repositories - 10 downloads last month - 6 stars on GitHub - 1 maintainer
mitty 2.29.0
Simulator for genomic data4 versions - Latest release: over 5 years ago - 1 dependent repositories - 27 downloads last month - 13 stars on GitHub - 1 maintainer
microhapdb 0.10.1
Portable database of microhaplotype marker and allele frequency data13 versions - Latest release: 7 months ago - 1 dependent repositories - 87 downloads last month - 8 stars on GitHub - 1 maintainer
manorm 1.3.0
A robust model for quantitative comparison of ChIP-Seq data sets7 versions - Latest release: about 4 years ago - 1 dependent repositories - 34 downloads last month - 20 stars on GitHub - 1 maintainer
loopercli 0.12.6
A pipeline submission engine that parses sample inputs and submits pipelines for each sample.8 versions - Latest release: about 4 years ago - 3 dependent repositories - 43 downloads last month - 19 stars on GitHub - 4 maintainers
looper 1.7.0
A pipeline submission engine that parses sample inputs and submits pipelines for each sample.18 versions - Latest release: 4 months ago - 5 dependent repositories - 332 downloads last month - 19 stars on GitHub - 3 maintainers
grape.recipe.pipeline 1.1.16
A Buildout recipe installing Grape RNA-Seq pipelines13 versions - Latest release: over 10 years ago - 3 dependent repositories - 16 downloads last month - 1 maintainer
grape.pipeline.runner 1.0
Console script for running Grape RNA-Seq pipelines1 version - Latest release: almost 12 years ago - 2 dependent repositories - 7 downloads last month - 0 stars on GitHub - 1 maintainer
Top 5.1% on pypi.org
19 versions - Latest release: 12 days ago - 4 dependent packages - 10 dependent repositories - 423 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-web-framework 24.0.2
Galaxy web framework19 versions - Latest release: 12 days ago - 4 dependent packages - 10 dependent repositories - 423 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-test-tools 19.9.0.dev2
Galaxy Test Tools`1 version - Latest release: over 2 years ago - 1 dependent repositories - 13 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-test-driver 24.0.2
Galaxy test driver18 versions - Latest release: 12 days ago - 1 dependent package - 1 dependent repositories - 185 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 4.1% on pypi.org
20 versions - Latest release: 12 days ago - 5 dependent packages - 10 dependent repositories - 430 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-job-execution 24.0.2
Galaxy job execution runtime utilities20 versions - Latest release: 12 days ago - 5 dependent packages - 10 dependent repositories - 430 downloads last month - 1,315 stars on GitHub - 3 maintainers
fqutils 0.0.0.dev6
fastq file utils in python5 versions - Latest release: over 6 years ago - 1 dependent repositories - 22 downloads last month - 1 maintainer
fings 1.7.1
Filters for Next Generation Sequencing4 versions - Latest release: almost 3 years ago - 1 dependent repositories - 46 downloads last month - 8 stars on GitHub - 1 maintainer
fastq-and-furious 0.3.2
Fast handling of FASTQ files6 versions - Latest release: almost 3 years ago - 2 dependent repositories - 32 downloads last month - 50 stars on GitHub - 1 maintainer
Top 8.1% on pypi.org
19 versions - Latest release: 6 months ago - 3 dependent packages - 6 dependent repositories - 13.9 thousand downloads last month - 4 stars on GitHub - 3 maintainers
eido 0.2.2
A project metadata validator19 versions - Latest release: 6 months ago - 3 dependent packages - 6 dependent repositories - 13.9 thousand downloads last month - 4 stars on GitHub - 3 maintainers
divvy 0.6.0
A python-based configuration manager for portable environment configurations12 versions - Latest release: over 2 years ago - 1 dependent package - 5 dependent repositories - 302 downloads last month - 4 stars on GitHub - 4 maintainers
demultiplex 1.2.2
Demultiplex any number of FASTA or a FASTQ files based on a list of barcodes9 versions - Latest release: over 2 years ago - 1 dependent repositories - 131 downloads last month - 27 stars on GitHub - 1 maintainer
demort 0.2.4
DEmultiplexing MOnitoring Report Tool3 versions - Latest release: almost 5 years ago - 1 dependent repositories - 24 downloads last month - 0 stars on GitHub - 1 maintainer
crispresso 1.0.13
Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from deep sequencing data11 versions - Latest release: almost 6 years ago - 1 dependent repositories - 62 downloads last month - 128 stars on GitHub - 1 maintainer
cosmos-wfm 2.13.11
Workflow Management System229 versions - Latest release: over 3 years ago - 4 dependent repositories - 481 downloads last month - 70 stars on GitHub - 1 maintainer
circle-map 1.1.4
Circular DNA analysis tools10 versions - Latest release: about 4 years ago - 1 dependent repositories - 94 downloads last month - 58 stars on GitHub - 1 maintainer
chronqc 1.0.4
A Quality Control Monitoring System for Clinical Next Generation Sequencing4 versions - Latest release: over 6 years ago - 1 dependent repositories - 39 downloads last month - 17 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
114
sequencing
53
genomics
45
pipeline
44
workflow
41
hacktoberfest
30
dna
28
workflow-engine
27
science
27
usegalaxy
26
Galaxy
21
transcriptome
14
RNA-Seq
14
python
12
ETL
11
rna-seq
10
project
10
snakemake
8
NGS
7
fastq
6
metadata
6
metagenomics
6
chip-seq
5
galaxy
5
sequana
5
bed
4
wgs
4
GUI
4
python3
3
pipelines
3
sequence-analysis
3
pipeline-submission-engine
3
3d-genome
3
hi-c
3
sequence
3
barcode
3
illumina
3
coverage
3
read-simulation
3
microbiology
3
quality-control
3
bacteria
3
differential analysis
2
rna
2
seqann
2
gfe
2
hla
2
hla-typing
2
database
2
Hi-C
2
contact
2
manager
2
DNA
2
alignment
2
mapper-evaluation
2
ngs-format
2
dna-seq
2
bioinformatics-pipeline
2
conversion
2
ChIP-seq
2
nanopore
2
atac-seq
2
sam
2
reproducibility
2
bam
2
cnv
2
demultiplexing
2
forensics
2
gvcf
2
server
2
microhaplotypes
2
next-generation-sequencing
2
high-throughput sequencing
2
reference-genome
2
long-reads
2
hts
2
long-read-sequencing
2
hifi
2
conda
2
sra
2
RNAseq
2
RNADiff
2
read mapper
1
aligner
1
variant caller
1
simulator
1
differential-expression
1
normalization
1
vsearch
1
metabarcoding
1
bio
1
RNA
1
cancer
1
cancer-genomics
1
multithreading
1
fasta
1
demultiplex
1
filtering
1
snvs
1
variants
1