Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "Hi-C" keyword
Top 6.0% on pypi.org
10 versions - Latest release: about 2 years ago - 4 dependent packages - 9 dependent repositories - 485 downloads last month - 60 stars on GitHub - 2 maintainers
hic-straw 1.3.1
Straw bound with pybind1110 versions - Latest release: about 2 years ago - 4 dependent packages - 9 dependent repositories - 485 downloads last month - 60 stars on GitHub - 2 maintainers
hiclift 1.0
Convert genomic coordinates of contact pairs from one assembly to another.1 version - Latest release: over 1 year ago - 42 downloads last month - 59 stars on GitHub - 1 maintainer
eaglec 0.1.9
A deep-learning framework for predicting a full range of structural variations from bulk and sing...8 versions - Latest release: about 1 year ago - 1 dependent repositories - 45 downloads last month - 48 stars on GitHub - 1 maintainer
Top 2.1% on pypi.org
46 versions - Latest release: 9 months ago - 22 dependent packages - 64 dependent repositories - 3.93 thousand downloads last month - 191 stars on GitHub - 2 maintainers
cooler 0.9.3
Sparse binary format for genomic interaction matrices.46 versions - Latest release: 9 months ago - 22 dependent packages - 64 dependent repositories - 3.93 thousand downloads last month - 191 stars on GitHub - 2 maintainers
peakachu 1.1.3
A supervised learning framework for chromatin loop detection in genome-wide contact maps.12 versions - Latest release: over 4 years ago - 1 dependent repositories - 108 downloads last month - 48 stars on GitHub - 2 maintainers
Top 5.3% on pypi.org
14 versions - Latest release: about 1 month ago - 3 dependent packages - 7 dependent repositories - 645 downloads last month - 120 stars on GitHub - 3 maintainers
cooltools 0.7.0
Analysis tools for genomic interaction data stored in .cool format14 versions - Latest release: about 1 month ago - 3 dependent packages - 7 dependent repositories - 645 downloads last month - 120 stars on GitHub - 3 maintainers
domaincaller 0.1.0
A python implementation of original DI-based domain caller proposed by Dixon et al. (2012)1 version - Latest release: almost 4 years ago - 1 dependent repositories - 18 downloads last month - 13 stars on GitHub - 1 maintainer
gcmapexplorer 1.0.30
A platform to visualize and analyze genome contact maps28 versions - Latest release: over 5 years ago - 1 dependent repositories - 594 downloads last month - 21 stars on GitHub - 1 maintainer
hisv 1.0.9
A computational pipeline for structural variation detection from Hi-C data4 versions - Latest release: 7 months ago - 25 downloads last month - 13 stars on GitHub - 1 maintainer
neoloop 0.4.3
Predict neo-loops induced by structural variations21 versions - Latest release: over 1 year ago - 1 dependent repositories - 220 downloads last month - 51 stars on GitHub - 1 maintainer
phic 2.0.13
Polymer dynamics deciphered from Hi-C data14 versions - Latest release: 4 months ago - 1 dependent repositories - 101 downloads last month - 3 stars on GitHub - 1 maintainer
hicpeaks 0.3.7
A Python implementation for BH-FDR and HiCCUPS14 versions - Latest release: 10 months ago - 1 dependent repositories - 118 downloads last month - 38 stars on GitHub - 1 maintainer
tadlib 0.4.5
A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains21 versions - Latest release: over 1 year ago - 1 dependent repositories - 225 downloads last month - 39 stars on GitHub - 2 maintainers
Top 7.0% on pypi.org
11 versions - Latest release: about 1 month ago - 3 dependent packages - 4 dependent repositories - 322 downloads last month - 87 stars on GitHub - 2 maintainers
pairtools 1.1.0
CLI tools to process mapped Hi-C data11 versions - Latest release: about 1 month ago - 3 dependent packages - 4 dependent repositories - 322 downloads last month - 87 stars on GitHub - 2 maintainers
hicml 0.2.2
ML tools for analyzing Hi-C data27 versions - Latest release: over 1 year ago - 1 dependent repositories - 150 downloads last month - 1 maintainer
runhic 0.8.7
A easy-to-use Hi-C processing software supporting distributed computation25 versions - Latest release: over 1 year ago - 1 dependent repositories - 165 downloads last month - 48 stars on GitHub - 1 maintainer
pairliftover 0.2.1
Convert genomic coordinates of contact pairs from one assembly to another.7 versions - Latest release: over 1 year ago - 1 dependent repositories - 55 downloads last month - 56 stars on GitHub - 1 maintainer
caltads 0.1.0
A hierarchical domain caller for Hi-C data based on a modified version of Directionality Index4 versions - Latest release: almost 7 years ago - 36 downloads last month - 5 stars on GitHub - 1 maintainer
decgr 1.0.5
An interactive toolkit for deciphering CGRs from Hi-C data3 versions - Latest release: 2 months ago - 46 downloads last month - 1 stars on GitHub - 1 maintainer
Related Keywords
cooler
9
hi-c
8
bioinformatics
8
genomics
6
python
5
chromatin
4
contact
4
3d-genome
4
pairs
3
TAD
3
contact-matrix
3
interaction
2
DI
2
4DN
2
liftover
2
ML
2
Chromatin
2
ngs
2
pairs-file
1
3D genomics
1
Arima
1
ICE
1
file-formatter
1
tads
1
tad
1
hierarchy
1
sub-TAD
1
AP
1
Preference
1
Aggregation
1
peaks
1
pipeline
1
4d-nucleome-network
1
arima
1
chromosome-conformation-capture
1
directionality
1
index
1
topologically
1
associating
1
domain
1
chromosome
1
organization
1
complex rearrangements
1
3D genome
1
3D Genomics
1
machine-learning
1
deep-learning
1
SVs
1
format
1
hdf5
1
matrix
1
sparse
1
file-format
1
loop
1
peak
1
analysis
1
Genome Contact Map Explorer
1
Contact Map Explorer
1
3D Genome Organization
1
genomic-data-analysis
1
structural variation
1
control-free
1
cancer
1
enhancer
1
hijacking
1
biophysics
1
polymer modeling
1
polymer dynamics
1
rheology
1
loops
1