Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "image analysis" keyword
jicbioimage.illustrate 0.6.1
Python package providing a set of tools for creating annotated images and illustrations.10 versions - Latest release: over 7 years ago - 3 dependent repositories - 20 downloads last month - 0 stars on GitHub - 1 maintainer
imsis 1.1.7
IMSIS7 versions - Latest release: 3 months ago - 1 dependent repositories - 30 downloads last month - 1 stars on GitHub - 1 maintainer
astro-ndslice 0.1.2
Convenience tools for slicing images & calcualting offsets before combinations (focusing on conve...4 versions - Latest release: over 1 year ago - 32 downloads last month - 1 stars on GitHub - 1 maintainer
cellprofiler-core-nightly 5.0.0.dev65
cellprofiler-core implements the bulk of CellProfiler's non-gui functionality2 versions - Latest release: about 1 month ago - 1 dependent package - 82 downloads last month - 857 stars on GitHub - 1 maintainer
imagepipe 0.2.0rc1
Biological image analysis pipelines compiler1 version - Latest release: over 6 years ago - 1 dependent repositories - 7 downloads last month - 1 stars on GitHub - 1 maintainer
ez-zarr 0.1.5
Give easy, high-level access to ome-zarr filesets.6 versions - Latest release: 4 months ago - 115 downloads last month - 11 stars on GitHub - 1 maintainer
cellprofiler-library-nightly 5.0.0.dev65
cellprofiler-library implements CellProfiler's image processing and mathematical code, and is usa...2 versions - Latest release: about 1 month ago - 2 dependent packages - 80 downloads last month - 857 stars on GitHub - 1 maintainer
cellprofiler-nightly 5.0.0.dev65
CellProfiler is a free open-source software designed to enable biologists without training in com...2 versions - Latest release: about 1 month ago - 323 downloads last month - 857 stars on GitHub - 1 maintainer
hdf5-django 0.1.2
HDF5 interfaces for Django2 versions - Latest release: almost 12 years ago - 2 dependent repositories - 31 downloads last month - 4 stars on GitHub - 1 maintainer
radiosphere 2.0.1
Software for the Practical Analysis of Materials2 versions - Latest release: 10 months ago - 14 downloads last month - 2 maintainers
gatorpy 0.1.16
GATOR: A scalable framework for automated processing of highly multiplexed tissue images14 versions - Latest release: about 1 year ago - 50 downloads last month - 9 stars on GitHub - 1 maintainer
nbp-colortools 1.0.1
A collection of tools for analyzing and sorting images by color.4 versions - Latest release: over 1 year ago - 26 downloads last month - 3 stars on GitHub - 1 maintainer
Top 1.1% on pypi.org
369 versions - Latest release: 18 days ago - 87 dependent packages - 899 dependent repositories - 145 thousand downloads last month - 2,432 stars on GitHub - 8 maintainers
earthengine-api 0.1.403
Earth Engine Python API369 versions - Latest release: 18 days ago - 87 dependent packages - 899 dependent repositories - 145 thousand downloads last month - 2,432 stars on GitHub - 8 maintainers
Top 3.2% on pypi.org
14 versions - Latest release: 4 months ago - 43 dependent packages - 23 dependent repositories - 6.66 thousand downloads last month - 397 stars on GitHub - 3 maintainers
squidpy 1.4.1
Spatial Single Cell Analysis in Python14 versions - Latest release: 4 months ago - 43 dependent packages - 23 dependent repositories - 6.66 thousand downloads last month - 397 stars on GitHub - 3 maintainers
scimap 2.0.4
Spatial Single-Cell Analysis Toolkit239 versions - Latest release: about 2 months ago - 1 dependent repositories - 2.59 thousand downloads last month - 60 stars on GitHub - 1 maintainer
shapelets 1.1
Shapelets is a module providing both reference access to various shapelet functions and some sign...3 versions - Latest release: about 2 months ago - 2 dependent repositories - 43 downloads last month - 7 stars on GitHub - 3 maintainers
yeaz 1.0.3
Deep-learning based yeast cell segmentation5 versions - Latest release: 3 months ago - 50 downloads last month - 27 stars on GitHub - 2 maintainers
impose 0.4.8
Fit and superimpose shapes from different imaging modalities19 versions - Latest release: 17 days ago - 3 dependent repositories - 193 downloads last month - 1 stars on GitHub - 2 maintainers
jicbioimage.segment 0.4.0
Python package designed to make it easy to segment bio images.4 versions - Latest release: about 8 years ago - 3 dependent repositories - 19 downloads last month - 0 stars on GitHub - 1 maintainer
jinxif 0.0.49
A python3-based image analysis package to achieve fully-documented and reproducible visualization...49 versions - Latest release: over 2 years ago - 1 dependent repositories - 254 downloads last month - 1 stars on GitLab.com - 1 maintainer
ysphotutilpy 0.1.1
Convenience utilities made by ysBach especially for photometry5 versions - Latest release: about 1 year ago - 50 downloads last month - 1 stars on GitHub - 1 maintainer
mplexable 1.0.3
A python3-based image analysis package to achieve fully-documented and reproducible visualization...5 versions - Latest release: almost 2 years ago - 1 dependent repositories - 50 downloads last month - 1 stars on GitLab.com - 1 maintainer
nicpolpy 0.1.5
Nishi-Harima Astronomical Observatory (NHAO) Near-Infrared Camera (NIC) polarimetry pipeline.6 versions - Latest release: about 1 year ago - 55 downloads last month - 1 stars on GitHub - 1 maintainer
jicbioimage 0.10.1
Python package designed to make it easy to work with bio images.4 versions - Latest release: over 8 years ago - 3 dependent repositories - 11 downloads last month - 3 stars on GitHub - 1 maintainer
jicbioimage.transform 0.6.0
Python package wrapping commonly used image transformations.10 versions - Latest release: over 7 years ago - 4 dependent repositories - 29 downloads last month - 1 stars on GitHub - 1 maintainer
orientationpy 0.2.0.4
Package for greyscale orientation analysis on 2D and 3D images5 versions - Latest release: over 1 year ago - 1 dependent package - 44 downloads last month - 1 stars on GitLab.com - 2 maintainers
sphere-kit 0.0
Computational tools for processing and analysis on hypersphere1 version - Latest release: almost 8 years ago - 1 dependent repositories - 7 downloads last month - 1 stars on GitHub - 1 maintainer
sunkit-image 0.5.1
A image processing toolbox for Solar Physics.10 versions - Latest release: 7 months ago - 1 dependent package - 1 dependent repositories - 550 downloads last month - 2 maintainers
Top 5.9% on pypi.org
24 versions - Latest release: 3 months ago - 10 dependent repositories - 1.88 thousand downloads last month - 280 stars on GitHub - 2 maintainers
porespy 2.4.1
A set of tools for analyzing 3D images of porous materials24 versions - Latest release: 3 months ago - 10 dependent repositories - 1.88 thousand downloads last month - 280 stars on GitHub - 2 maintainers
spam 4.0.2
Software for the Practical Analysis of Materials54 versions - Latest release: almost 2 years ago - 1 dependent package - 7 dependent repositories - 1 thousand downloads last month - 3 stars on GitLab.com - 6 maintainers
Top 5.5% on pypi.org
10 versions - Latest release: over 2 years ago - 3 dependent packages - 7 dependent repositories - 1.44 thousand downloads last month - 79 stars on GitHub - 1 maintainer
pyefd 1.6.0
Python implementation of "Elliptic Fourier Features of a Closed Contour"10 versions - Latest release: over 2 years ago - 3 dependent packages - 7 dependent repositories - 1.44 thousand downloads last month - 79 stars on GitHub - 1 maintainer
cellacdc 1.4.31
Cell segmentation, tracking and event annotation101 versions - Latest release: 26 days ago - 1 dependent repositories - 1.23 thousand downloads last month - 117 stars on GitHub - 1 maintainer
ysfitsutilpy 0.2
Convenience utilities made by ysBach especially for dealing FITS files in astronomical sciences.1 version - Latest release: over 1 year ago - 29 downloads last month - 5 stars on GitHub - 1 maintainer
pixelpartitioner 1.0.2
Tools for pixel partitioning, intensity-based segmentation, and visualization.3 versions - Latest release: 3 months ago - 22 downloads last month - 0 stars on GitHub - 1 maintainer
acdctools 0.3
Collection of tools used by Cell-ACDC and spotMAX1 version - Latest release: 12 months ago - 32 downloads last month - 0 stars on GitHub - 1 maintainer
arcu 0.1.1
Find representative subpopulations in single cell imaging data.2 versions - Latest release: 10 months ago - 29 downloads last month - 0 stars on GitHub - 1 maintainer
cspot 1.0.12
CELL SPOTTER (CSPOT): A scalable framework for automated processing of highly multiplexed tissue ...9 versions - Latest release: about 2 months ago - 75 downloads last month - 9 stars on GitHub - 1 maintainer
wellplate-image 0.1.1
A Python library for understanding of well-plate images.2 versions - Latest release: about 1 year ago - 5 downloads last month - 0 stars on GitHub - 1 maintainer
campa 1.1.0
Conditional Autoencoders for Multiplexed Pixel Analysis2 versions - Latest release: over 1 year ago - 1 dependent repositories - 15 downloads last month - 13 stars on GitHub - 1 maintainer
obj.mpp 2023.3 💰
Object/pattern detection using a Marked Point Process8 versions - Latest release: about 1 year ago - 54 downloads last month - 1,578 stars on GitHub - 1 maintainer
mplex-image 0.0.7
A python3-based image analysis package to achieve fully-documented and reproducible visualization...8 versions - Latest release: over 3 years ago - 1 dependent repositories - 39 downloads last month - 5 stars on GitLab.com - 2 maintainers
jicimagelib 0.3.4
Python package designed to make it easy to work with microscopy images.6 versions - Latest release: almost 9 years ago - 2 dependent repositories - 30 downloads last month - 0 stars on GitHub - 1 maintainer
jicbioimage.core 0.15.0
Python package designed to make it easy to work with bio images.23 versions - Latest release: over 7 years ago - 7 dependent repositories - 59 downloads last month - 1 stars on GitHub - 1 maintainer
deepblink 0.1.4
Threshold independent detection and localization of diffraction-limited spots.13 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 1.1 thousand downloads last month - 33 stars on GitHub - 2 maintainers
clonedetective 0.0.3
A python package for the scalable analysis of fluorescent imaging data from lineage tracing exper...3 versions - Latest release: over 2 years ago - 1 dependent repositories - 32 downloads last month - 1 stars on GitHub - 1 maintainer
nima 0.10.0
Numerical IMage Analyses.16 versions - Latest release: 24 days ago - 158 downloads last month - 0 stars on GitHub - 1 maintainer
h5dj 0.1.0
HDF5 interfaces for Django1 version - Latest release: almost 12 years ago - 2 dependent repositories - 12 downloads last month - 4 stars on GitHub - 1 maintainer
btpytools 0.1.37
Helper functions for BakingTray and StitchIt25 versions - Latest release: about 1 month ago - 1 dependent repositories - 142 downloads last month - 1 stars on GitHub - 1 maintainer
koopa 0.0.13
Workflow for analysis of cellular microscopy data.13 versions - Latest release: about 1 year ago - 30 downloads last month - 1 stars on GitHub - 2 maintainers
Related Keywords
microscopy
8
multiplex imaging
7
python
6
image processing
5
single cell analysis
4
astronomy
4
data reduction
4
biology
4
cyclic immunofluorescence
3
numpy
3
live-cell imaging
3
image-analysis
3
cell segmentation
3
cellprofiler
3
cell
3
computer vision
3
image-processing
3
cell tracking
3
synthetic images
2
spatial data analysis
2
pypi
2
cell cycle annotations
2
bio-informatics
2
single-cell
2
storage
2
matrix
2
arrays
2
django
2
image comparison
2
imaging
2
image data extraction
2
biomedical
2
spatial-analysis
2
96 well
1
wellplate-image
1
multiplexed imaging
1
subcellular landmarks
1
signal
1
image
1
object detection
1
pattern detection
1
computational biology
1
single-cell bioinformatics
1
image-recognition
1
fourier-series
1
features
1
registration
1
feature-extraction
1
contours
1
shape descriptors
1
fourier descriptors
1
elliptic fourier descriptors
1
random fields
1
label analysis
1
strain calculation
1
multimodal registration
1
cli
1
biomedical-image-analysis
1
bioinformatics
1
data handling
1
anatomy
1
ratio imaging
1
pH
1
chloride
1
ClopHensor
1
lineage tracing
1
cell differentiation
1
cell proliferation
1
spot-detection
1
publication
1
diffraction-limited-spots
1
blob-detection
1
spot detection
1
deep-learning
1
requirements
1
pip
1
importerror
1
distribution-search
1
denpendenies
1
marked point process
1
Nishi-Harima Astronomical Observatory
1
near-infrared
1
polarimetry
1
shapelets
1
single-cell-analysis
1
squidpy
1
spatial-transcriptomics
1
single-cell-rna-seq
1
single-cell-genomics
1
data-visualization
1
spatial transcriptomics
1
earth engine
1
photography
1
color analysis
1
spheres
1
deconvolution
1
reconstruction
1
ome-zarr
1
Fractal
1
ome_zarr
1