Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "spatial transcriptomics" keyword
somde 0.1.8
Algorithm for finding gene spatial pattern based on Gaussian process accelerated by SOM7 versions - Latest release: about 3 years ago - 2 dependent packages - 1 dependent repositories - 61 downloads last month - 5 stars on GitHub - 1 maintainer
ecmanalysis 0.0.18
Tools for analysis of the extracellular matrix18 versions - Latest release: over 1 year ago - 88 downloads last month - 1 maintainer
Top 3.2% on pypi.org
14 versions - Latest release: 4 months ago - 43 dependent packages - 23 dependent repositories - 6.66 thousand downloads last month - 397 stars on GitHub - 3 maintainers
squidpy 1.4.1
Spatial Single Cell Analysis in Python14 versions - Latest release: 4 months ago - 43 dependent packages - 23 dependent repositories - 6.66 thousand downloads last month - 397 stars on GitHub - 3 maintainers
step-kit 0.2.2
STEP, an acronym for Spatial Transcriptomics Embedding Procedure, is a deep learning-based tool f...4 versions - Latest release: about 1 month ago - 134 downloads last month - 3 stars on GitHub - 1 maintainer
deeptalk-st 0.0.12
Cell-cell communication prediction for ST data3 versions - Latest release: 6 months ago - 21 downloads last month - 0 stars on GitHub - 1 maintainer
humanheartspatial 0.0.4
Python package for analysis of slide-seq data on heart tissue4 versions - Latest release: 6 months ago - 16 downloads last month - 1 maintainer
dissect-deconv 0.1 removed
1 version - Latest release: 5 months ago - 1 maintainernode-deconvolution-scipy 0.1.3
A Python program for deconvolution spatial transcriptomics data and inference of spatial communic...1 version - Latest release: 29 days ago - 154 downloads last month - 0 stars on GitHub - 1 maintainer
node-deconvolution 0.1.3
A Python program for deconvolution spatial transcriptomics data and inference of spatial communic...1 version - Latest release: about 1 month ago - 159 downloads last month - 0 stars on GitHub - 1 maintainer
soapy-st 0.1.4
Spatial Omics Analysis in Python4 versions - Latest release: 5 months ago - 40 downloads last month - 5 stars on GitHub - 1 maintainer
humanspatialheart 0.0.6
Python package for analysis of slide-seq data on heart tissue6 versions - Latest release: 8 months ago - 52 downloads last month - 1 maintainer
spatialhumanheart 0.0.4
Python package for analysis of slide-seq data on heart tissue3 versions - Latest release: 8 months ago - 25 downloads last month - 1 maintainer
nico-sc-sp 0.1.0
This package finds covariation patterns between interacted niche cell types from single-cell reso...10 versions - Latest release: 6 months ago - 76 downloads last month - 24 stars on GitHub - 1 maintainer
sagenet 0.1.1
Spatial reconstruction of dissociated single-cell data2 versions - Latest release: over 2 years ago - 1 dependent repositories - 13 downloads last month - 16 stars on GitHub - 1 maintainer
pysmfish 0.1.5
Analysis of large spatial transcriptomics data (osmFISH).10 versions - Latest release: almost 6 years ago - 1 dependent repositories - 53 downloads last month - 1 maintainer
muse-sc 0.0.8
MUSE is a deep learning approach characterizing tissue composition through combined analysis of m...8 versions - Latest release: over 3 years ago - 1 dependent repositories - 66 downloads last month - 27 stars on GitHub - 1 maintainer
commot 0.0.3
Cell-cell communications inference for spatial transcriptomics data via optimal transport.2 versions - Latest release: over 1 year ago - 1 dependent repositories - 194 downloads last month - 218 stars on GitHub - 1 maintainer
celerypy 1.2.1
Leverage spatial transcriptomics data to recover cell locations in single-cell RNA RNA-seq10 versions - Latest release: about 2 months ago - 170 downloads last month - 21 stars on GitHub - 1 maintainer
Related Keywords
deep learning
4
python
4
bioinformatics
3
scRNA-seq
3
bio-informatics
3
deconvolution
3
single-cell
3
spatial data analysis
3
slide-seq
3
human heart
3
heart tissue
3
cell-cell communicaiton
2
spatial communication
2
spatial-transcriptomics
2
niche covariation
1
nico
1
STARmap
1
seqFISH
1
MERFISH
1
scRNAseq
1
SpatialDE
1
multi-omic-integration
1
non-negative-matrix-factorization
1
single-cell data analysis
1
singlecell
1
transcriptomics
1
single-cell analysis
1
clustering
1
data-integration
1
deep-learning
1
multi-modal-analysis
1
single-cell-ananlysis
1
tensorflow
1
optimal transport
1
CeLEry
1
self organizing map(SOM)
1
extracellular matrix
1
matrisome
1
image analysis
1
data-visualization
1
image-analysis
1
single-cell-genomics
1
single-cell-rna-seq
1
spatial-analysis
1
squidpy
1
single-cell RNA-seq
1
SRT
1
step
1
STEP
1
machine learning
1
single cell sequencing
1
bulk rna sequencing
1
spatial omics
1
niche
1
single-cell RNA sequencing
1