Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "single-cell" keyword
gtfast 0.0.3
GTFast - cache and subset a `.gtf` file as a `.csv` for faster subsequent use.2 versions - Latest release: about 2 years ago - 1 dependent repositories - 9 downloads last month - 2 stars on GitHub - 1 maintainer
moscot 0.3.4
Multi-omic single-cell optimal transport tools7 versions - Latest release: 3 months ago - 215 downloads last month - 96 stars on GitHub - 1 maintainer
Top 8.2% on pypi.org
28 versions - Latest release: 3 months ago - 3 dependent packages - 1 dependent repositories - 1.41 thousand downloads last month - 315 stars on GitHub - 4 maintainers
scarches 0.6.1
Transfer learning with Architecture Surgery on Single-cell data28 versions - Latest release: 3 months ago - 3 dependent packages - 1 dependent repositories - 1.41 thousand downloads last month - 315 stars on GitHub - 4 maintainers
epiverse 0.0.1
EpiVerse: A single pipeline for exploring the entire epigenomics universe1 version - Latest release: 10 months ago - 1 dependent repositories - 6 downloads last month - 10 stars on GitHub - 1 maintainer
Top 6.5% on pypi.org
9 versions - Latest release: 5 months ago - 8 dependent packages - 12 dependent repositories - 876 downloads last month - 42 stars on GitHub - 2 maintainers
harmony-pytorch 0.1.8
Pytorch implementation of Harmony algorithm on single-cell sequencing data integration9 versions - Latest release: 5 months ago - 8 dependent packages - 12 dependent repositories - 876 downloads last month - 42 stars on GitHub - 2 maintainers
muvi 0.1.1
MuVI: A multi-view latent variable model with domain-informed structured sparsity for integrating...3 versions - Latest release: 8 months ago - 207 downloads last month - 25 stars on GitHub - 1 maintainer
scvega 0.0.2
VEGA: a VAE Enhanced by Gene Annotations for interpretable scRNA-seq deep learning1 version - Latest release: over 2 years ago - 1 dependent repositories - 17 downloads last month - 13 stars on GitHub - 1 maintainer
sccross 1.0.4
Single cell multi-omics cross modal generation, multi-omics simulation and perturbation6 versions - Latest release: 28 days ago - 241 downloads last month - 0 stars on GitHub - 1 maintainer
Top 7.3% on pypi.org
44 versions - Latest release: about 1 month ago - 3 dependent repositories - 1.89 thousand downloads last month - 34 stars on GitHub - 2 maintainers
vitessce 3.2.6
Jupyter widget facilitating interactive visualization of spatial single-cell data with Vitessce44 versions - Latest release: about 1 month ago - 3 dependent repositories - 1.89 thousand downloads last month - 34 stars on GitHub - 2 maintainers
campa 1.1.0
Conditional Autoencoders for Multiplexed Pixel Analysis2 versions - Latest release: over 1 year ago - 1 dependent repositories - 10 downloads last month - 13 stars on GitHub - 1 maintainer
cite-seq-count 1.4.5
A python package to map reads from CITE-seq or hashing data for single cell experiments11 versions - Latest release: about 3 years ago - 1 dependent repositories - 136 downloads last month - 74 stars on GitHub - 1 maintainer
scce 0.1.2
a Single-cell method for predicting Chromatin Conformation based on gene Expression3 versions - Latest release: 11 months ago - 19 downloads last month - 0 stars on GitHub - 1 maintainer
Top 4.7% on pypi.org
32 versions - Latest release: 2 months ago - 5 dependent packages - 5 dependent repositories - 2.4 thousand downloads last month - 305 stars on GitHub - 3 maintainers
cellrank 2.0.4
CellRank: dynamics from multi-view single-cell data32 versions - Latest release: 2 months ago - 5 dependent packages - 5 dependent repositories - 2.4 thousand downloads last month - 305 stars on GitHub - 3 maintainers
dbmap 1.2.0
dbMAP: diffusion metrics, graphs and layouts for machine-learning8 versions - Latest release: about 3 years ago - 1 dependent package - 1 dependent repositories - 40 downloads last month - 45 stars on GitHub - 1 maintainer
scslat 0.2.1
A graph deep learning based tool to align single cell spatial omics data2 versions - Latest release: about 1 year ago - 25 downloads last month - 65 stars on GitHub - 1 maintainer
Top 3.9% on pypi.org
63 versions - Latest release: over 1 year ago - 6 dependent packages - 14 dependent repositories - 2.91 thousand downloads last month - 380 stars on GitHub - 3 maintainers
pyscenic 0.12.1
Python implementation of the SCENIC pipeline for transcription factor inference from single-cell ...63 versions - Latest release: over 1 year ago - 6 dependent packages - 14 dependent repositories - 2.91 thousand downloads last month - 380 stars on GitHub - 3 maintainers
nico-sc-sp 0.1.0
This package finds covariation patterns between interacted niche cell types from single-cell reso...10 versions - Latest release: 6 months ago - 57 downloads last month - 24 stars on GitHub - 1 maintainer
pyliger 0.2.2
The Python version of LIGER package.10 versions - Latest release: 2 months ago - 1 dependent package - 1 dependent repositories - 95 downloads last month - 24 stars on GitHub - 2 maintainers
singlecelldata 1.0.2
A python package for managing single-cell RNA-seq datasets.3 versions - Latest release: over 2 years ago - 1 dependent repositories - 28 downloads last month - 0 stars on GitHub - 1 maintainer
Top 9.6% on pypi.org
38 versions - Latest release: about 1 month ago - 2 dependent packages - 1 dependent repositories - 460 downloads last month - 51 stars on GitHub - 1 maintainer
cell2cell 0.7.4
TBD38 versions - Latest release: about 1 month ago - 2 dependent packages - 1 dependent repositories - 460 downloads last month - 51 stars on GitHub - 1 maintainer
omicverse 1.5.9
OmicVerse: A single pipeline for exploring the entire transcriptome universe32 versions - Latest release: about 1 month ago - 1 dependent repositories - 950 downloads last month - 133 stars on GitHub - 1 maintainer
scvae 2.1.4
Model single-cell transcript counts using deep learning.7 versions - Latest release: almost 4 years ago - 1 dependent repositories - 24 downloads last month - 78 stars on GitHub - 1 maintainer
pyomic 1.2.9
A python framework library for omics analysis32 versions - Latest release: about 1 year ago - 1 dependent repositories - 80 downloads last month - 133 stars on GitHub - 1 maintainer
epiaster 0.0.7
ASTER: accurate estimation of cell-type numbers in single-cell chromatin accessibility data6 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 5 downloads last month - 5 stars on GitHub - 1 maintainer
Top 4.8% on pypi.org
36 versions - Latest release: over 5 years ago - 1 dependent package - 7 dependent repositories - 1.97 thousand downloads last month - 153 stars on GitHub - 1 maintainer
velocyto 0.17.17
RNA velocity analysis for single cell RNA-seq data36 versions - Latest release: over 5 years ago - 1 dependent package - 7 dependent repositories - 1.97 thousand downloads last month - 153 stars on GitHub - 1 maintainer
cirrocumulus 1.1.57
Bring your single-cell data to life143 versions - Latest release: 9 months ago - 1 dependent repositories - 799 downloads last month - 65 stars on GitHub - 3 maintainers
Top 7.4% on pypi.org
24 versions - Latest release: 7 months ago - 3 dependent packages - 1 dependent repositories - 2.96 thousand downloads last month - 234 stars on GitHub - 2 maintainers
celltypist 1.6.2
A tool for semi-automatic cell type classification24 versions - Latest release: 7 months ago - 3 dependent packages - 1 dependent repositories - 2.96 thousand downloads last month - 234 stars on GitHub - 2 maintainers
vintools 0.0.55
vintools - Michael Vinyard's utilities.23 versions - Latest release: over 2 years ago - 1 dependent repositories - 101 downloads last month - 2 stars on GitHub - 1 maintainer
awgan 0.1.0
code for model AWGAN10 versions - Latest release: over 2 years ago - 1 dependent repositories - 30 downloads last month - 7 stars on GitHub - 1 maintainer
devcellpy 1.5.0
devCellPy -- hierarchical multilayered classification of cells based on scRNA-seq17 versions - Latest release: 3 months ago - 1 dependent repositories - 77 downloads last month - 18 stars on GitHub - 1 maintainer
anansescanpy 1.0.0
implementation of scANANSE for scanpy objects in Python17 versions - Latest release: over 1 year ago - 59 downloads last month - 7 stars on GitHub - 1 maintainer
transmorph 0.2.8
A unifying data integration framework.20 versions - Latest release: 11 months ago - 1 dependent repositories - 49 downloads last month - 10 stars on GitHub - 1 maintainer
celltometry 0.0.1
Learn single-cell data structure through topological bases, graphs and layouts1 version - Latest release: about 2 years ago - 24 downloads last month - 1 stars on GitHub - 1 maintainer
snpmanifold 0.0.1
SNPmanifold: Manifold learning for single-cell SNVs5 versions - Latest release: about 1 month ago - 267 downloads last month - 1 stars on GitHub - 2 maintainers
mellon 1.4.2
Non-parametric density estimator.11 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 3.08 thousand downloads last month - 31 stars on GitHub - 1 maintainer
convexgating 0.1.0
ConvexGating is a Python tool to infer optimal gating strategies for flow cytometry and cyTOF data.1 version - Latest release: over 1 year ago - 10 downloads last month - 7 stars on GitHub - 2 maintainers
sobolev-alignment 1.0.0
Sobolev alignment of deep probabilistic models for comparing single cell profiles1 version - Latest release: about 1 year ago - 10 downloads last month - 5 stars on GitHub - 1 maintainer
cosg 1.0.1
Accurate and fast cell marker gene identification with COSG1 version - Latest release: almost 3 years ago - 2 dependent packages - 1 dependent repositories - 84 downloads last month - 35 stars on GitHub - 1 maintainer
cellcano 1.0.4
Cellcano is for supervised cell type identification (celltyping) in single-cell genomics.7 versions - Latest release: almost 2 years ago - 1 dependent repositories - 66 downloads last month - 9 stars on GitHub - 1 maintainer
scaanet 1.0.0
An implementation of nonlinear archetypal analysis on single-cell RNA-seq data through autoencoder1 version - Latest release: over 2 years ago - 1 dependent repositories - 14 downloads last month - 12 stars on GitHub - 1 maintainer
velodyn 0.1.0
Dynamical systems approaches for RNA velocity analysis1 version - Latest release: about 4 years ago - 1 dependent repositories - 22 downloads last month - 23 stars on GitHub - 1 maintainer
Top 4.9% on pypi.org
11 versions - Latest release: 10 months ago - 6 dependent packages - 12 dependent repositories - 1.92 thousand downloads last month - 114 stars on GitHub - 1 maintainer
anndata2ri 1.3.1
Convert between AnnData and SingleCellExperiment11 versions - Latest release: 10 months ago - 6 dependent packages - 12 dependent repositories - 1.92 thousand downloads last month - 114 stars on GitHub - 1 maintainer
cellograph 0.0.6
cellograph6 versions - Latest release: over 1 year ago - 29 downloads last month - 5 stars on GitHub - 1 maintainer
Top 7.4% on pypi.org
11 versions - Latest release: 4 months ago - 4 dependent packages - 2 dependent repositories - 622 downloads last month - 119 stars on GitHub - 1 maintainer
infercnvpy 0.4.5
Infercnv is a scalable python library to infer copy number variation (CNV) events from single cel...11 versions - Latest release: 4 months ago - 4 dependent packages - 2 dependent repositories - 622 downloads last month - 119 stars on GitHub - 1 maintainer
Top 8.3% on pypi.org
20 versions - Latest release: about 2 months ago - 4 dependent repositories - 397 downloads last month - 67 stars on GitHub - 1 maintainer
scalex 1.0.3
Online single-cell data integration through projecting heterogeneous datasets into a common cell-...20 versions - Latest release: about 2 months ago - 4 dependent repositories - 397 downloads last month - 67 stars on GitHub - 1 maintainer
cell-ann 0.0.1
cell-ann: Cell approximate nearest neighbors4 versions - Latest release: 7 months ago - 26 downloads last month - 0 stars on GitHub - 1 maintainer
mdmcleaner 0.8.7
A pipeline for the assessment, classification and refinement of microbial dark matter SAGs and MAGs5 versions - Latest release: over 1 year ago - 1 dependent repositories - 13 downloads last month - 18 stars on GitHub - 1 maintainer
mitea-hires 0.0.19
Infer single-cell and spatial microRNA activity from transcriptomics data19 versions - Latest release: 3 months ago - 111 downloads last month - 0 stars on GitHub - 1 maintainer
torch-adata 0.0.24
torch-adata24 versions - Latest release: 12 months ago - 1 dependent package - 1 dependent repositories - 121 downloads last month - 21 stars on GitHub - 1 maintainer
mowgli 0.3.0
Mowgli is a novel method for the integration of paired multi-omics data with any type and number ...4 versions - Latest release: 12 months ago - 2 dependent repositories - 93 downloads last month - 1 stars on GitHub - 1 maintainer
cg-gnn 0.3.2
Train a graph neural network on cell graphs.14 versions - Latest release: 5 months ago - 1 dependent package - 108 downloads last month - 4 stars on GitHub - 1 maintainer
pascrd 0.1.0
Programmatic Access to Single Cell Repositories for Downloading1 version - Latest release: over 1 year ago - 8 downloads last month - 0 stars on GitHub - 1 maintainer
spaceant 0.0.1
Spatial Cell Analysis Toolkit.2 versions - Latest release: over 2 years ago - 1 dependent repositories - 6 downloads last month - 1 maintainer
scouts 0.1.4
Single Cell Outlier Selector5 versions - Latest release: over 4 years ago - 1 dependent repositories - 38 downloads last month - 3 stars on GitHub - 1 maintainer
spatialtis 0.5.0
Ultra-fast spatial analysis toolkit for large-scale spatial single-cell data11 versions - Latest release: almost 2 years ago - 1 dependent repositories - 56 downloads last month - 29 stars on GitHub - 1 maintainer
scmmd 0.1.0
Maximum mean discrepancy comparisons single cell profiles1 version - Latest release: about 4 years ago - 1 dependent repositories - 14 downloads last month - 13 stars on GitHub - 1 maintainer
scomix 0.0.1
Python package for analysis of data from single-cell data-science.1 version - Latest release: over 3 years ago - 1 dependent repositories - 8 downloads last month - 0 stars on GitHub - 1 maintainer
singlecellhaystack 0.0.5
A Python implementation of singleCellHaystack.5 versions - Latest release: 11 months ago - 35 downloads last month - 8 stars on GitHub - 1 maintainer
dsae-impute 1.1.4
scRNA-seq imputation2 versions - Latest release: over 3 years ago - 1 dependent repositories - 14 downloads last month - 2 stars on GitHub - 1 maintainer
cellplots 0.0.0
Cell & Genomics Plotting2 versions - Latest release: 10 months ago - 1 dependent package - 18 downloads last month - 0 stars on GitHub - 1 maintainer
marcopolo-pytorch 1.1.1
MarcoPolo: a method to discover differentially expressed genes in single-cell RNA-seq data withou...12 versions - Latest release: almost 2 years ago - 33 downloads last month - 18 stars on GitHub - 1 maintainer
normalisr 1.0.0
Normalisr Offers Robust Modelling of Associations Linearly In Single-cell RNA-seq7 versions - Latest release: over 2 years ago - 1 dependent repositories - 31 downloads last month - 17 stars on GitHub - 1 maintainer
orthomap 0.0.1
extract orthomap from OrthoFinder output for query species1 version - Latest release: about 1 year ago - 7 downloads last month - 6 stars on GitHub - 1 maintainer
scdiffeq 0.1.0
scDiffEq: modeling single-cell dynamics using neural differential equations.31 versions - Latest release: 3 months ago - 1 dependent repositories - 96 downloads last month - 0 stars on GitHub - 1 maintainer
nsforest 3.9.2
A machine learning method for the discovery of minimum marker gene combinations for cell type ide...6 versions - Latest release: over 1 year ago - 42 downloads last month - 50 stars on GitHub - 3 maintainers
gctree 4.2.1
phylogenetic inference of genotype-collapsed trees20 versions - Latest release: about 2 months ago - 1 dependent repositories - 114 downloads last month - 15 stars on GitHub - 1 maintainer
Top 6.1% on pypi.org
11 versions - Latest release: 4 months ago - 11 dependent packages - 2 dependent repositories - 5.33 thousand downloads last month - 141 stars on GitHub - 1 maintainer
decoupler 1.6.0
Ensemble of methods to infer biological activities from omics data11 versions - Latest release: 4 months ago - 11 dependent packages - 2 dependent repositories - 5.33 thousand downloads last month - 141 stars on GitHub - 1 maintainer
scglue 0.3.2
Graph-linked unified embedding for unpaired single-cell multi-omics data integration8 versions - Latest release: almost 2 years ago - 4 dependent packages - 248 downloads last month - 334 stars on GitHub - 1 maintainer
scphylo-tools 0.0.4
a python toolkit for single-cell tumor phylogenetic analysis5 versions - Latest release: 11 months ago - 1 dependent repositories - 105 downloads last month - 5 stars on GitHub - 1 maintainer
pyscuba 0.1.1
Python for Single-cell Clustering Using Bifurcation Analysis2 versions - Latest release: almost 8 years ago - 1 dependent repositories - 12 downloads last month - 0 stars on GitHub - 1 maintainer
Top 7.6% on pypi.org
9 versions - Latest release: about 2 years ago - 2 dependent packages - 2 dependent repositories - 231 downloads last month - 247 stars on GitHub - 3 maintainers
scgen 2.1.0
ScGen - Predicting single cell perturbations.9 versions - Latest release: about 2 years ago - 2 dependent packages - 2 dependent repositories - 231 downloads last month - 247 stars on GitHub - 3 maintainers
Top 3.2% on pypi.org
14 versions - Latest release: 4 months ago - 43 dependent packages - 23 dependent repositories - 6.66 thousand downloads last month - 397 stars on GitHub - 3 maintainers
squidpy 1.4.1
Spatial Single Cell Analysis in Python14 versions - Latest release: 4 months ago - 43 dependent packages - 23 dependent repositories - 6.66 thousand downloads last month - 397 stars on GitHub - 3 maintainers
wc-onto 0.0.2
Ontology for whole-cell modeling1 version - Latest release: about 4 years ago - 1 dependent repositories - 29 downloads last month - 1 stars on GitHub - 2 maintainers
scmeta 0.2.6
A python package for single-cell metabolism analysis.9 versions - Latest release: 4 months ago - 40 downloads last month - 12 stars on GitHub - 1 maintainer
scale-v2 2.0.3.dev0
Single-cell integrative Analysis via Latent feature Extraction4 versions - Latest release: about 3 years ago - 1 dependent repositories - 34 downloads last month - 67 stars on GitHub - 1 maintainer
pertpy 0.7.0
Perturbation Analysis in the scverse ecosystem.7 versions - Latest release: about 2 months ago - 1 dependent package - 1 dependent repositories - 744 downloads last month - 67 stars on GitHub - 2 maintainers
genomap 1.3.6
Genomap converts tabular gene expression data into spatially meaningful images.24 versions - Latest release: 10 months ago - 178 downloads last month - 11 stars on GitHub - 1 maintainer
sccase 0.2.3
7 versions - Latest release: 5 months ago - 17 downloads last month - 1 maintainercellsnap 0.0.4
A package for enhancing single-cell population delineation by integrating cross-domain information.3 versions - Latest release: 2 months ago - 20 downloads last month - 2 stars on GitHub - 1 maintainer
pyvia 0.1.993
trajectory inference100 versions - Latest release: about 1 month ago - 1 dependent repositories - 546 downloads last month - 73 stars on GitHub - 1 maintainer
Top 8.9% on pypi.org
26 versions - Latest release: 26 days ago - 2 dependent packages - 1 dependent repositories - 1.87 thousand downloads last month - 177 stars on GitHub - 1 maintainer
snapatac2 2.6.3
SnapATAC2: Single-cell epigenomics analysis pipeline26 versions - Latest release: 26 days ago - 2 dependent packages - 1 dependent repositories - 1.87 thousand downloads last month - 177 stars on GitHub - 1 maintainer
truncated-normal 0.4
Package for running the TN test described in https://www.biorxiv.org/content/early/2018/11/05/4632653 versions - Latest release: about 5 years ago - 1 dependent repositories - 12 downloads last month - 33 stars on GitHub - 1 maintainer
trisicell 0.2.3
Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data26 versions - Latest release: 6 months ago - 1 dependent repositories - 814 downloads last month - 10 stars on GitHub - 1 maintainer
Top 9.7% on pypi.org
33 versions - Latest release: 9 months ago - 3 dependent repositories - 477 downloads last month - 109 stars on GitHub - 1 maintainer
sinto 0.10.0
Tools for single-cell data processing33 versions - Latest release: 9 months ago - 3 dependent repositories - 477 downloads last month - 109 stars on GitHub - 1 maintainer
pixelgen-pixelator 0.16.2
A command-line tool and library to process and analyze sequencing data from Molecular Pixelation ...10 versions - Latest release: 3 months ago - 66 downloads last month - 9 stars on GitHub - 3 maintainers
scotch-sc 1.0.0
SCOTCH: Single-Cell multi-modal integration using Optimal Transport and Cell matCHing1 version - Latest release: 5 months ago - 7 downloads last month - 4 stars on GitHub - 1 maintainer
scperturb 0.1.0
Python package with E-distance tools for single-cell perturbation data analysis.7 versions - Latest release: 6 months ago - 73 downloads last month - 87 stars on GitHub - 1 maintainer
Top 8.6% on pypi.org
18 versions - Latest release: over 4 years ago - 1 dependent package - 2 dependent repositories - 506 downloads last month - 132 stars on GitHub - 1 maintainer
wot 1.0.8
Optimal transport for time-course single cell data18 versions - Latest release: over 4 years ago - 1 dependent package - 2 dependent repositories - 506 downloads last month - 132 stars on GitHub - 1 maintainer
cna 0.1.6
covarying neighborhood analysis16 versions - Latest release: 8 months ago - 3 dependent repositories - 135 downloads last month - 45 stars on GitHub - 1 maintainer
Top 9.6% on pypi.org
48 versions - Latest release: about 3 years ago - 1 dependent package - 5 dependent repositories - 177 downloads last month - 220 stars on GitHub - 3 maintainers
starfish 0.2.2
Pipelines and pipeline components for the analysis of image-based transcriptomics data48 versions - Latest release: about 3 years ago - 1 dependent package - 5 dependent repositories - 177 downloads last month - 220 stars on GitHub - 3 maintainers
sincei 0.3.1
A user-friendly toolkit for QC, counting, clustering and plotting of single-cell (epi)genomics data3 versions - Latest release: 11 months ago - 17 downloads last month - 1 stars on GitHub - 1 maintainer
cell-tools 0.0.21
cell_tools - Analysis Tools for Single-Cell Data3 versions - Latest release: over 2 years ago - 1 dependent repositories - 28 downloads last month - 1 stars on GitHub - 1 maintainer
Top 2.9% on pypi.org
36 versions - Latest release: 12 months ago - 18 dependent packages - 33 dependent repositories - 2.86 thousand downloads last month - 448 stars on GitHub - 1 maintainer
phate 1.0.11
PHATE36 versions - Latest release: 12 months ago - 18 dependent packages - 33 dependent repositories - 2.86 thousand downloads last month - 448 stars on GitHub - 1 maintainer
ipolng 0.0.2
An unsupervised model for the integrative analysis of single-cell multiomics data, coded in the d...2 versions - Latest release: over 1 year ago - 14 downloads last month - 0 stars on GitHub - 1 maintainer
sisua 0.4.4
SemI-SUpervised generative Autoencoder for single cell data7 versions - Latest release: over 4 years ago - 1 dependent repositories - 54 downloads last month - 18 stars on GitHub - 1 maintainer
Top 9.3% on pypi.org
12 versions - Latest release: 6 months ago - 1 dependent repositories - 2.3 thousand downloads last month - 828 stars on GitHub - 1 maintainer
scgpt 0.2.1
Large-scale generative pretrain of single cell using transformer.12 versions - Latest release: 6 months ago - 1 dependent repositories - 2.3 thousand downloads last month - 828 stars on GitHub - 1 maintainer
scatac-fragment-tools 0.1.1
Tools for working with scATAC-seq fragment files.2 versions - Latest release: 3 months ago - 765 downloads last month - 2 stars on GitHub - 1 maintainer
liana 1.1.0
LIANA+: a one-stop-shop framework for cell-cell communication18 versions - Latest release: about 2 months ago - 1.79 thousand downloads last month - 120 stars on GitHub - 1 maintainer
scprel 1.1.11
Single-cell data preprocessing for multiple samples.16 versions - Latest release: 7 months ago - 78 downloads last month - 1 maintainer
picturedrocks 1.0.2
Single Cell RNA Sequencing Marker Selection Package9 versions - Latest release: over 3 years ago - 1 dependent repositories - 36 downloads last month - 4 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
36
python
29
rna-seq
20
deep-learning
20
scrna-seq
16
machine-learning
15
genomics
14
single-cell-rna-seq
14
anndata
13
single-cell-analysis
13
computational-biology
12
single-cell-genomics
12
transcriptomics
11
clustering
10
visualization
8
scanpy
7
spatial-transcriptomics
7
pytorch
7
data-science
7
spatial
6
data-visualization
6
bio-informatics
5
RNA-seq
5
scRNA-seq
5
manifold-learning
5
dimensionality-reduction
5
single cell
5
gene-expression
4
scatac-seq
4
biology
4
kinetics
4
pseudo-time
4
optimal-transport
4
multiomics
4
gene-regulatory-network
4
scverse
4
data-integration
4
cell-cell-communication
3
embedding
3
phylogenetics
3
spatialomics
3
evolution
3
bulk-rna-seq
3
epigenomics
3
scRNAseq
3
omics
3
spatial transcriptomics
3
pip
3
multi-omic-integration
3
semi-supervised-learning
3
cancer
3
network
3
RNA
3
human-cell-atlas
3
data
3
integration
3
multi-omics
3
epigenetics
3
analysis
3
pipeline
3
methylation
3
scrna-seq-analysis
3
single-cell-omics
3
imputation
3
spatial data analysis
3
variational-autoencoder
3
online-integration
2
scalex
2
single-cell-sequencing
2
phylostratigraphy
2
spatial-analysis
2
uce
2
rnaseq
2
outlier-detection
2
gene expression
2
Deep Learning
2
orthologs
2
cell-cell-interaction
2
graph
2
gene age
2
orthomap
2
big-data
2
genetic-variants
2
dynamical-systems
2
bayesian-inference
2
dna-methylation
2
ligand-receptor
2
seurat
2
rna
2
grn
2
scrnaseq
2
transcriptome
2
cell-type-classification
2
differential-expression
2
co-expression
2
crispr
2
sequencing
2
r
2
rna-velocity
2
batch-correction
2