Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "long-reads" keyword
strkit-rust-ext 0.10.0
A short tandem repeat (STR) genotyping and analysis toolkit for long reads13 versions - Latest release: 4 months ago - 1 dependent package - 2.28 thousand downloads last month - 2 stars on GitHub - 1 maintainer
strkit 0.14.0
A toolkit for analyzing variation in short(ish) tandem repeats.108 versions - Latest release: 4 months ago - 1 dependent repositories - 1.23 thousand downloads last month - 2 stars on GitHub - 1 maintainer
pepper-polish 0.1.5
RNN based standalone assembly polisher.8 versions - Latest release: over 3 years ago - 1 dependent repositories - 51 downloads last month - 231 stars on GitHub - 1 maintainer
lrphase 1.1.2
Phasing individual long reads using known haplotype information.65 versions - Latest release: about 1 year ago - 1 dependent repositories - 209 downloads last month - 2 stars on GitHub - 3 maintainers
lapa 0.0.5
Tools for alternative polyadenylation detection and analysis from diverse data sources (3'seq and...5 versions - Latest release: over 1 year ago - 1 dependent repositories - 44 downloads last month - 22 stars on GitHub - 2 maintainers
isocon 0.3.3
Pipeline for obtaining non-redundant haplotype specific transcript isoforms using PacBio IsoSeq r...6 versions - Latest release: about 4 years ago - 1 dependent repositories - 32 downloads last month - 13 stars on GitHub - 1 maintainer
pyabpoa 1.5.1
pyabpoa: SIMD-based partial order alignment using adaptive band22 versions - Latest release: 5 months ago - 1 dependent package - 1 dependent repositories - 315 downloads last month - 105 stars on GitHub - 1 maintainer
pyscaf 0.12a4
Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, an...5 versions - Latest release: over 7 years ago - 1 dependent repositories - 39 downloads last month - 24 stars on GitHub - 1 maintainer
redundans 0.13a5
Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.6 versions - Latest release: over 7 years ago - 1 dependent repositories - 51 downloads last month - 107 stars on GitHub - 1 maintainer
tiptoft 1.0.2
tiptoft: predict which plasmid should be present from uncorrected long read data6 versions - Latest release: over 4 years ago - 1 dependent repositories - 83 downloads last month - 37 stars on GitHub - 1 maintainer
plasmidpredictor 0.1.0
plasmidpredictor: predict which plasmid should be present from uncorrected long read data1 version - Latest release: almost 6 years ago - 1 dependent repositories - 54 downloads last month - 37 stars on GitHub - 1 maintainer
haplotaglr 1.1.5
Phasing individual long reads using known haplotype information.2 versions - Latest release: 6 months ago - 18 downloads last month - 2 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
7
genomics
6
nanopore
3
oxford-nanopore
3
assembly
2
scaffolding
2
paired-end
2
synteny
2
genome
2
bioinformatics-pipeline
2
global-health
2
infectious-diseases
2
kmer
2
pacbio
2
pathogen
2
plasmid
2
plasmidfinder
2
research
2
uncorrected
2
hifi
2
long-read-sequencing
2
ngs
2
phasing
2
haplotype
2
Iso-Seq
1
heterozygous
1
reduction
1
assembled-contigs
1
closing
1
contigs
1
docker-image
1
fasta
1
gap
1
genome-assembly
1
mate-pairs
1
pipeline
1
polymorphic
1
python
1
variants
1
variant-calling
1
pacbio-ccs
1
genome-variation
1
assembly-polishing
1
CCS
1
PacBio
1
transcript
1
long-read
1
ccs
1
clustering
1
error-correction
1
transcriptome
1
multiple-sequence-alignment
1
partial-order-graph-alignment
1
alignment-graph
1
banded-dp
1
consensus-sequence
1
consensus-sequences
1
gfa-format
1
partial-order-alignment
1
simd
1
transcription
1
rna-seq
1
polyadenylation
1
APA
1
long read RNA-seq
1
reference
1