Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "variants" keyword
Top 9.9% on pypi.org
75 versions - Latest release: about 1 month ago - 1 dependent repositories - 376 downloads last month - 128 stars on GitHub - 3 maintainers
pvactools 4.2.0
A cancer immunotherapy tools suite75 versions - Latest release: about 1 month ago - 1 dependent repositories - 376 downloads last month - 128 stars on GitHub - 3 maintainers
patientmatcher 3.1.2
A python and MongoDB-based Matchmaker Exchange server24 versions - Latest release: over 2 years ago - 1 dependent repositories - 98 downloads last month - 11 stars on GitHub - 3 maintainers
Top 8.1% on pypi.org
9 versions - Latest release: over 4 years ago - 3 dependent repositories - 290 downloads last month - 142 stars on GitHub - 3 maintainers
svtools 0.5.1
Tools for processing and analyzing structural variants9 versions - Latest release: over 4 years ago - 3 dependent repositories - 290 downloads last month - 142 stars on GitHub - 3 maintainers
ga4gh-server 0.3.6
A reference implementation of the GA4GH API1 version - Latest release: about 7 years ago - 2 dependent repositories - 10 downloads last month - 97 stars on GitHub - 2 maintainers
granite-suite 0.2.0
granite is a collection of software to call, filter and work with genomic variants.16 versions - Latest release: about 2 years ago - 1 dependent package - 1 dependent repositories - 88 downloads last month - 5 stars on GitHub - 2 maintainers
clinvar-this 0.14.6
ClinVar Submission via API Made Easy30 versions - Latest release: 6 months ago - 578 downloads last month - 6 stars on GitHub - 1 maintainer
score_mip_variants 0.6.2
Annotate vcf variants with a rank score15 versions - Latest release: over 9 years ago - 2 dependent repositories - 33 downloads last month - 1 maintainer
charger 0.5.2
Characterization of Germline variants4 versions - Latest release: over 6 years ago - 1 dependent repositories - 64 downloads last month - 94 stars on GitHub - 2 maintainers
biovars 0.1.0
Tool for joining all the bioinfo-hcpa's variant information retrieval APIs.1 version - Latest release: almost 2 years ago - 4 downloads last month - 3 stars on GitHub - 1 maintainer
varapp-backend-py 1.0.1.1
Genomic variants explorer2 versions - Latest release: 10 months ago - 3 dependent repositories - 22 downloads last month - 20 stars on GitHub - 1 maintainer
fings 1.7.1
Filters for Next Generation Sequencing4 versions - Latest release: about 3 years ago - 1 dependent repositories - 25 downloads last month - 9 stars on GitHub - 1 maintainer
gdbigtools 1.1.6
GDBIGtools: A command line tools for GDBIG variant browser.3 versions - Latest release: over 2 years ago - 1 dependent repositories - 9 downloads last month - 6 stars on GitHub - 1 maintainer
pepper-polish 0.1.5
RNN based standalone assembly polisher.8 versions - Latest release: over 3 years ago - 1 dependent repositories - 51 downloads last month - 231 stars on GitHub - 1 maintainer
mitoviz 0.9.0
Plot variants on the human mitochondrial genome.21 versions - Latest release: almost 4 years ago - 1 dependent repositories - 126 downloads last month - 2 stars on GitHub - 1 maintainer
iannotatesv 1.2.1
The module helps to annotate structural variants called using NGS on human.2 versions - Latest release: over 3 years ago - 1 dependent repositories - 13 downloads last month - 16 stars on GitHub - 1 maintainer
py-everything 2.3.0
A python module containing all the basic functions and classes for python but doesn't stop at tha...10 versions - Latest release: almost 3 years ago - 1 dependent repositories - 19 downloads last month - 11 stars on GitHub - 1 maintainer
parterre 1.4.1
A set of variants for the Parlance Diplomacy Framework.1 version - Latest release: almost 15 years ago - 1 dependent repositories - 11 downloads last month - 1 maintainer
pvacseq-client 0.0.2
Web Front-End for pVAC-Seq3 versions - Latest release: about 7 years ago - 1 dependent package - 1 dependent repositories - 10 downloads last month - 0 stars on GitHub - 3 maintainers
gofeatureflag-python-provider 0.2.0 💰
GO Feature Flag provider for OpenFeature7 versions - Latest release: about 1 month ago - 96 downloads last month - 930 stars on GitHub - 1 maintainer
vcf-annotation-tools 3.0.0
A tool for annotating VCF files with expression and readcount data15 versions - Latest release: over 5 years ago - 1 dependent repositories - 57 downloads last month - 25 stars on GitHub - 1 maintainer
snoopy 0.4.7
Browser based quality control tool to expedite reviewing predicted variants in next generation se...7 versions - Latest release: over 7 years ago - 3 dependent repositories - 47 downloads last month - 9 stars on GitHub - 1 maintainer
vcf_parser 1.5.9
Parsing vcf files49 versions - Latest release: over 7 years ago - 4 dependent repositories - 1.12 thousand downloads last month - 42 stars on GitHub - 1 maintainer
vatools 5.1.1
A tool for annotating VCF files with expression and readcount data9 versions - Latest release: 4 months ago - 1 dependent repositories - 170 downloads last month - 24 stars on GitHub - 3 maintainers
stranger 0.8.1
Annotate VCF files with str variants15 versions - Latest release: over 2 years ago - 2 dependent repositories - 89 downloads last month - 27 stars on GitHub - 3 maintainers
proteofav 0.2.3
PROtein Feature Aggregation and Variants.3 versions - Latest release: over 6 years ago - 1 dependent repositories - 12 downloads last month - 3 stars on GitHub - 1 maintainer
pvacseq 4.0.10
Personalized Variant Antigens by Cancer Sequencing (pVAC-Seq)20 versions - Latest release: almost 7 years ago - 2 dependent repositories - 52 downloads last month - 60 stars on GitHub - 2 maintainers
hchacha 1.0.5
Human CHromosome Accession CHAnge - Convert between different human chromosome naming systems (of...6 versions - Latest release: 11 months ago - 48 downloads last month - 1 maintainer
transcriptionary 0.1.1
transcript plots2 versions - Latest release: about 1 year ago - 15 downloads last month - 1 stars on GitHub - 1 maintainer
mutalyzer-algebra 1.5.1
A Boolean Algebra for Genetic Variants20 versions - Latest release: 5 months ago - 2 dependent packages - 1 dependent repositories - 153 downloads last month - 10 stars on GitHub - 2 maintainers
variant_integrity 0.0.4
Tool to check mendelian errors and estimate if father is father4 versions - Latest release: over 7 years ago - 2 dependent repositories - 24 downloads last month - 1 stars on GitHub - 3 maintainers
python-outbreak-info 1.0.4
Python interface to Outbreak.info, powered by GISAID3 versions - Latest release: 4 months ago - 1 dependent repositories - 96 downloads last month - 6 stars on GitHub - 1 maintainer
python-outbreak-data 1.0 removed
Python interface to Outbreak.info, powered by GISAID1 version - Latest release: about 1 year ago - 4 downloads last month - 5 stars on GitHub - 1 maintainer
ga4gh 0.3.5
A reference implementation of the GA4GH API18 versions - Latest release: over 7 years ago - 3 dependent repositories - 61 downloads last month - 97 stars on GitHub - 3 maintainers
variants 0.2.0
Library that enables the creation of alternate constructor-likevariant forms for arbitrary functi...3 versions - Latest release: about 6 years ago - 6 dependent repositories - 69 downloads last month - 73 stars on GitHub - 1 maintainer
Top 8.7% on pypi.org
164 versions - Latest release: 6 months ago - 7 dependent repositories - 609 downloads last month - 67 stars on GitHub - 5 maintainers
genmod 3.8.2
Annotate genetic inheritance models in variant files164 versions - Latest release: 6 months ago - 7 dependent repositories - 609 downloads last month - 67 stars on GitHub - 5 maintainers
snptoolkit 2.3.0
Explore, filter, annotate and analyse your SNPs/indels from VCF files24 versions - Latest release: about 3 years ago - 1 dependent repositories - 164 downloads last month - 4 stars on GitHub - 1 maintainer
loqusdb 2.7.4
Store observations of vcf variants in a mongodb33 versions - Latest release: 3 months ago - 3 dependent packages - 3 dependent repositories - 378 downloads last month - 8 stars on GitHub - 4 maintainers
pynoma 0.1.0
A Python API to communicate with gnomAD database.1 version - Latest release: almost 2 years ago - 1 dependent repositories - 11 downloads last month - 7 stars on GitHub - 1 maintainer
ensembl-variant-lookup 0.1.2
a user-friendly interface for searching individual variants, batch queries, and exploring gene re...3 versions - Latest release: 5 months ago - 24 downloads last month - 0 stars on GitHub - 1 maintainer
pytest-variant 1.1.0
Variant support for Pytest2 versions - Latest release: about 2 years ago - 1 dependent repositories - 27 downloads last month - 1 stars on GitHub - 1 maintainer
cgbeacon2 4.5.1
A beacon supporting GA4GH API 1.010 versions - Latest release: 7 months ago - 1 dependent repositories - 88 downloads last month - 0 stars on GitHub - 1 maintainer
cmdbtools 1.1.3
cmdbtools: A command line tools for CMDB variant browser.13 versions - Latest release: almost 2 years ago - 1 dependent repositories - 76 downloads last month - 23 stars on GitHub - 1 maintainer
upd 0.2 removed
Simple software to call UPD regions from germline exome/wgs trios.1 version - Latest release: about 1 year ago - 1 maintainer
seaviz 0.1
Play around with seaborn plots from a cli1 version - Latest release: over 5 years ago - 1 dependent repositories - 8 downloads last month - 0 stars on GitHub - 1 maintainer
Related Keywords
vcf
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genomics
10
bioinformatics
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variant
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sequencing
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3
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ensembl-rest
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beacon
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chinese-genome-database
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upd
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cram
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