Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
hackage.haskell.org "bioinformatics" keyword
BiobaseXNA 0.11.1.1
This is a base library for bioinformatics with emphasis on RNA and DNA primary structure as well ...34 versions - Latest release: almost 3 years ago - 12 dependent repositories - 31 thousand downloads total - 7 stars on GitHub - 1 maintainer
ADPfusion 0.6.0.0
generalized Algebraic Dynamic Programming ADPfusion combines stream-fusion (using the stream int...20 versions - Latest release: over 4 years ago - 8 dependent repositories - 19.4 thousand downloads total - 26 stars on GitHub - 1 maintainer
diversity 0.8.1.0
Calculates the diversity of each position in a fasta file.26 versions - Latest release: over 6 years ago - 2 dependent packages - 18 dependent repositories - 18.3 thousand downloads total - 1 stars on GitHub - 1 maintainer
BiobaseInfernal 0.8.1.0
Provides import and export facilities for Infernal/Rfam data formats. We include Stockholm, CM, v...16 versions - Latest release: about 7 years ago - 1 dependent repositories - 15.8 thousand downloads total - 4 stars on GitHub - 1 maintainer
BioHMM 1.2.0
Libary containing parsing and visualisation functions and datastructures for Hidden Markov Models...20 versions - Latest release: almost 7 years ago - 15 thousand downloads total - 1 maintainer
bio 0.5.3
This is a collection of data structures and algorithms useful for building bioinformatics-related...16 versions - Latest release: almost 11 years ago - 2 dependent repositories - 14.2 thousand downloads total - 2 maintainers
ViennaRNAParser 1.3.3
Currently contains parsers and datatypes for: RNAalifold, RNAcode, RNAdistance, RNAcofold, RNAfol...15 versions - Latest release: over 6 years ago - 24 dependent repositories - 12.3 thousand downloads total - 1 maintainer
biohazard 1.1.1
20 versions - Latest release: over 5 years ago - 6 dependent repositories - 12.3 thousand downloads total - 1 maintainerBiobaseTurner 0.3.1.1
13 versions - Latest release: about 11 years ago - 2 dependent repositories - 12 thousand downloads total - 1 maintainerClustalParser 1.3.0
Currently contains parsers and datatypes for: clustalw2, clustalo, mlocarna, cmalign Clustal too...14 versions - Latest release: over 4 years ago - 23 dependent repositories - 11.3 thousand downloads total - 1 maintainer
samtools 0.2.4
15 versions - Latest release: over 9 years ago - 1 dependent repositories - 11.1 thousand downloads total - 1 maintainerseqloc 0.6.1
14 versions - Latest release: over 9 years ago - 133 dependent repositories - 11.1 thousand downloads total - 1 maintainertoo-many-cells 3.0.1.0
Cluster single cells and analyze cell clade relationships with colorful visualizations.29 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 10.6 thousand downloads total - 100 stars on GitHub - 1 maintainer
BiobaseVienna 0.3.0.0
11 versions - Latest release: about 11 years ago - 1 dependent repositories - 10.5 thousand downloads total - 1 maintainerbirch-beer 0.4.2.1
Generate a tree for displaying a hierarchy of groups with colors, scaling, and more.25 versions - Latest release: over 1 year ago - 2 dependent packages - 1 dependent repositories - 9.71 thousand downloads total - 6 stars on GitHub - 1 maintainer
RNAlien 1.7.0
14 versions - Latest release: almost 5 years ago - 7 dependent repositories - 9.64 thousand downloads total - 1 maintainerflower 0.7.2
13 versions - Latest release: over 10 years ago - 9.58 thousand downloads total - 1 maintainerViennaRNA-bindings 0.233.2.0
Bindings to the ViennaRNA package, version 2.3.3. Only a partial set of bindings is provided. If...10 versions - Latest release: over 6 years ago - 1 dependent repositories - 9.12 thousand downloads total - 2 stars on GitHub - 1 maintainer
biosff 0.3.7
9 versions - Latest release: over 10 years ago - 93 dependent repositories - 8.97 thousand downloads total - 1 maintainerFormalGrammars 0.4.0.0
generalized Algebraic Dynamic Programming Context-free grammars in formal language theory are se...10 versions - Latest release: over 4 years ago - 4 dependent repositories - 8.51 thousand downloads total - 5 stars on GitHub - 1 maintainer
hemokit 0.6.6
This package allows reading raw data from the Emotiv EPOC EEG devices. It is inspired and based ...12 versions - Latest release: almost 9 years ago - 1 dependent repositories - 8.45 thousand downloads total - 31 stars on GitHub - 2 maintainers
BiobaseTypes 0.2.1.0
Types used in a number of bioinformatics libraries. linear indices energies biostring wrappers11 versions - Latest release: almost 3 years ago - 12 dependent repositories - 8.3 thousand downloads total - 3 stars on GitHub - 1 maintainer
biostockholm 0.3.4
10 versions - Latest release: almost 9 years ago - 7.67 thousand downloads total - 1 maintainermodify-fasta 0.8.3.0
Modify fasta (and CLIP) files in several ways.13 versions - Latest release: about 6 years ago - 17 dependent repositories - 7.63 thousand downloads total - 2 stars on GitHub - 1 maintainer
BlastHTTP 1.4.2
Searches for a provided nucleotide or protein sequence with the NCBI Blast REST service and retur...9 versions - Latest release: almost 3 years ago - 134 dependent repositories - 7.55 thousand downloads total - 5 stars on GitHub - 1 maintainer
GrammarProducts 0.2.0.0
generalized Algebraic Dynamic Programming An algebra of linear and context-free grammars. This ...9 versions - Latest release: over 4 years ago - 1 dependent repositories - 7.35 thousand downloads total - 2 stars on GitHub - 1 maintainer
biophd 0.0.8
Library for reading phd sequence files9 versions - Latest release: about 9 years ago - 97 dependent repositories - 7.32 thousand downloads total - 4 stars on GitHub - 1 maintainer
BiobaseFasta 0.4.0.1
Stream-based handling of FASTA files. The user selects a window size, the library then handles th...10 versions - Latest release: almost 3 years ago - 8 dependent repositories - 7.3 thousand downloads total - 4 stars on GitHub - 1 maintainer
StockholmAlignment 1.3.0
Libary containing parsing and visualisation functions and datastructures for Stockholm aligmnent ...10 versions - Latest release: over 4 years ago - 2 dependent repositories - 6.86 thousand downloads total - 1 maintainer
seqloc-datafiles 0.4.2
10 versions - Latest release: about 9 years ago - 6.84 thousand downloads total - 1 maintainerphybin 0.2.11
This package provides a libary and executable for dealing with Newick tree files. It can do simp...9 versions - Latest release: almost 11 years ago - 1 dependent repositories - 6.77 thousand downloads total - 1 maintainer
bioalign 0.0.5
6 versions - Latest release: almost 12 years ago - 133 dependent repositories - 6.67 thousand downloads total - 1 maintainerRNAFold 1.99.3.4
RNAfold v2 using the ADPfusion library. The RNAfold algorithm is used to determine how fast we ca...6 versions - Latest release: over 10 years ago - 1 dependent repositories - 6.2 thousand downloads total - 1 maintainer
Biobase 0.3.1.1
6 versions - Latest release: about 13 years ago - 6.1 thousand downloads total - 1 maintainerbiocore 0.3.1
4 versions - Latest release: over 11 years ago - 135 dependent repositories - 6.08 thousand downloads total - 1 maintainersequence-formats 1.7.1
Contains utilities to parse and write Eigenstrat, Fasta, FreqSum, VCF, Plink and other file forma...25 versions - Latest release: about 1 year ago - 1 dependent package - 10 dependent repositories - 6.07 thousand downloads total - 1 stars on GitHub - 1 maintainer
flowsim 0.3.5
7 versions - Latest release: over 10 years ago - 5.89 thousand downloads total - 1 maintainerhyraxAbif 0.2.4.5
This library provides functionality for parsing, modifying, writing and generating ABIF files A...16 versions - Latest release: 6 months ago - 2 dependent packages - 5.69 thousand downloads total - 10 stars on GitHub - 1 maintainer
hierarchical-spectral-clustering 0.5.0.1
Hierarchical spectral clustering of a graph.15 versions - Latest release: over 4 years ago - 2 dependent packages - 1 dependent repositories - 5.64 thousand downloads total - 7 stars on GitHub - 1 maintainer
RNAwolf 0.4.0.0
6 versions - Latest release: over 12 years ago - 5.54 thousand downloads total - 1 maintainerdephd 0.1.6
dephd - A simple tool for base calling and quality appraisal. Reads files in phd-format (phred o...7 versions - Latest release: about 13 years ago - 5.52 thousand downloads total - 2 maintainers
adp-multi 0.2.3
6 versions - Latest release: about 11 years ago - 1 dependent repositories - 5.37 thousand downloads total - 1 maintainerBiobaseTrainingData 0.1.2.3
5 versions - Latest release: over 12 years ago - 5.06 thousand downloads total - 1 maintainerBiobaseFR3D 0.2.3.0
5 versions - Latest release: over 12 years ago - 5.04 thousand downloads total - 1 maintainercmv 1.0.8
cmv is a collection of tools for the visualisation of Hidden Markov Models (HMMV) and RNA-family ...8 versions - Latest release: over 6 years ago - 5.02 thousand downloads total - 1 maintainer
rank-product 0.2.2.0
Collects the functions pertaining to finding the rank product of a data set as well as the associ...10 versions - Latest release: over 5 years ago - 10 dependent repositories - 5.01 thousand downloads total - 0 stars on GitHub - 1 maintainer
blastxml 0.3.2
4 versions - Latest release: over 9 years ago - 133 dependent repositories - 4.57 thousand downloads total - 1 maintainerelynx-tree 0.5.0
Examine, compare, and simulate phylogenetic trees in a reproducible way. Please see the README on...24 versions - Latest release: over 3 years ago - 4 dependent packages - 7 dependent repositories - 4.57 thousand downloads total - 9 stars on GitHub - 1 maintainer
Nussinov78 0.1.0.0
5 versions - Latest release: over 11 years ago - 4.54 thousand downloads total - 1 maintainerAlignmentAlgorithms 0.1.0.0
generalized Algebraic Dynamic Programming A selection of (sequence) alignment algorithms. Both t...5 versions - Latest release: about 7 years ago - 1 dependent repositories - 4.53 thousand downloads total - 1 stars on GitHub - 1 maintainer
elynx-seq 0.5.0
Examine, modify, and simulate molecular sequences in a reproducible way. Please see the README on...24 versions - Latest release: over 3 years ago - 3 dependent packages - 7 dependent repositories - 4.52 thousand downloads total - 9 stars on GitHub - 1 maintainer
elynx-tools 0.5.0
Please see the README on GitHub at https://github.com/dschrempf/elynx.24 versions - Latest release: over 3 years ago - 6 dependent packages - 7 dependent repositories - 4.51 thousand downloads total - 9 stars on GitHub - 1 maintainer
RNAdesign 0.1.2.2
The RNA sequence design problem asks for a single sequence that readily folds into the (one or mo...5 versions - Latest release: over 10 years ago - 4.47 thousand downloads total - 1 maintainer
biofasta 0.0.3
3 versions - Latest release: over 11 years ago - 134 dependent repositories - 4.39 thousand downloads total - 1 maintainerbiopsl 0.4
4 versions - Latest release: over 11 years ago - 133 dependent repositories - 4.34 thousand downloads total - 1 maintainerslynx 0.5.0
Examine, modify, and simulate molecular sequences in a reproducible way. Please see the README on...24 versions - Latest release: over 3 years ago - 2 dependent packages - 7 dependent repositories - 4.33 thousand downloads total - 9 stars on GitHub - 1 maintainer
Genbank 1.0.3
Haskell cabal Genbank libary contains tools, parser and datastructures for the NCBI (National Cen...4 versions - Latest release: over 9 years ago - 16 dependent repositories - 4.31 thousand downloads total - 1 maintainer
EntrezHTTP 1.0.4
EntrezHTTP provides functions to query the NCBI entrez REST interface. There are multiple differ...5 versions - Latest release: almost 7 years ago - 13 dependent repositories - 4.29 thousand downloads total - 4 stars on GitHub - 1 maintainer
tlynx 0.5.0
Examine, compare, and simulate phylogenetic trees in a reproducible way. Please see the README on...24 versions - Latest release: over 3 years ago - 2 dependent packages - 7 dependent repositories - 4.27 thousand downloads total - 9 stars on GitHub - 1 maintainer
BiobaseBlast 0.3.3.0
This library contains BLAST-related functionality: Parser for tabular NCBI BLAST+ output Parser...6 versions - Latest release: almost 3 years ago - 3 dependent repositories - 4.22 thousand downloads total - 3 stars on GitHub - 2 maintainers
bamstats 0.4
4 versions - Latest release: over 10 years ago - 4.11 thousand downloads total - 1 maintainerCMCompare 0.0.1.5
4 versions - Latest release: over 11 years ago - 4.05 thousand downloads total - 1 maintainerTaxonomy 2.2.0
Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation for the N...6 versions - Latest release: almost 3 years ago - 15 dependent repositories - 3.99 thousand downloads total - 1 maintainer
convert-annotation 0.5.1.0
Convert the annotation of a gene to another in a delimited file using a variety of different data...6 versions - Latest release: over 6 years ago - 4 dependent repositories - 3.84 thousand downloads total - 1 stars on GitHub - 1 maintainer
a50 0.5
a50 - a simple tool for graphing genome coverage and fragmentation. Reads files of contigs, and ...3 versions - Latest release: almost 11 years ago - 3.83 thousand downloads total - 1 maintainer
samtools-iteratee 0.2.2
5 versions - Latest release: over 12 years ago - 1 dependent repositories - 3.75 thousand downloads total - 1 maintainerxml2x 0.4.2
xml2x - convert blast output in XML format, either to a (csv) table suitable for e.g. importing i...4 versions - Latest release: over 14 years ago - 3.67 thousand downloads total - 2 maintainers
clustertools 0.1.5
This is a bunch of stuff I needed at some for manipulating sequence clusters. See the README for ...4 versions - Latest release: almost 13 years ago - 3.64 thousand downloads total - 2 maintainers
elynx 0.5.0
Please see the README on GitHub at https://github.com/dschrempf/elynx.22 versions - Latest release: over 3 years ago - 6 dependent repositories - 3.51 thousand downloads total - 9 stars on GitHub - 1 maintainer
elynx-markov 0.5.0
Examine, modify, and simulate molecular sequences in a reproducible way. Please see the README on...22 versions - Latest release: over 3 years ago - 1 dependent package - 6 dependent repositories - 3.44 thousand downloads total - 9 stars on GitHub - 1 maintainer
ForestStructures 0.0.1.1
This library provides both static and dynamic tree and forest structures. Once a tree structure i...4 versions - Latest release: 12 months ago - 15 dependent repositories - 3.26 thousand downloads total - 3 stars on GitHub - 1 maintainer
blosum 0.1.1.4
BLOSUM matrix generator with the addition of any generic characters for special amino acids4 versions - Latest release: over 7 years ago - 16 dependent repositories - 3.21 thousand downloads total - 1 stars on GitHub - 1 maintainer
mmtf 0.1.3.1
Haskell implementation of MMTF biological structure format.6 versions - Latest release: over 5 years ago - 3.21 thousand downloads total - 3 stars on GitHub - 1 maintainer
PDBtools 0.0.3
This is a collection of modules for the analysis of protein coordinates. The suite allows efficie...3 versions - Latest release: almost 12 years ago - 1 dependent repositories - 3.13 thousand downloads total - 1 maintainer
samtools-enumerator 0.1.2
4 versions - Latest release: over 12 years ago - 3.08 thousand downloads total - 1 maintainerelynx-nexus 0.5.0
Examine, modify, and simulate molecular sequences in a reproducible way. Please see the README on...20 versions - Latest release: over 3 years ago - 1 dependent package - 6 dependent repositories - 2.91 thousand downloads total - 9 stars on GitHub - 1 maintainer
adp-multi-monadiccp 0.2.1
3 versions - Latest release: about 11 years ago - 2.91 thousand downloads total - 1 maintainerMC-Fold-DP 0.1.1.0
3 versions - Latest release: over 11 years ago - 2.87 thousand downloads total - 1 maintainerRNAFoldProgs 0.0.0.3
3 versions - Latest release: over 13 years ago - 2.81 thousand downloads total - 1 maintainerSelectSequencesFromMSA 1.0.5
4 versions - Latest release: about 6 years ago - 2.76 thousand downloads total - 1 maintainersmiles 0.2.0.0
Full support of OpenSMILES and SMARTS specifications for Haskell4 versions - Latest release: almost 7 years ago - 2.74 thousand downloads total - 6 stars on GitHub - 1 maintainer
estreps 0.3.1
rselect - select a random set of sequences from a FASTA file, optinally with random orientation (...3 versions - Latest release: over 14 years ago - 2.72 thousand downloads total - 2 maintainers
memexml 0.0.3
Haskell cabal libary for parsing Meme motif finder xml output3 versions - Latest release: over 8 years ago - 2.62 thousand downloads total - 3 stars on GitHub - 1 maintainer
bioace 0.0.1
2 versions - Latest release: almost 12 years ago - 133 dependent repositories - 2.58 thousand downloads total - 1 maintainerxsact 1.7.3
3 versions - Latest release: over 13 years ago - 2.49 thousand downloads total - 2 maintainerssequenceTools 1.5.2
The tools in this package process sequencing Data, in particular from ancient DNA sequencing libr...8 versions - Latest release: over 2 years ago - 1 dependent package - 7 dependent repositories - 2.47 thousand downloads total - 39 stars on GitHub - 1 maintainer
MutationOrder 0.0.1.0
Determine the most likely order in which single nucleotide mutations happened between two RNA seq...3 versions - Latest release: over 6 years ago - 2.46 thousand downloads total - 0 stars on GitHub - 1 maintainer
korfu 0.1.1
3 versions - Latest release: over 14 years ago - 2.43 thousand downloads total - 1 maintainermodularity 0.2.1.1
Find the modularity of a network.5 versions - Latest release: almost 5 years ago - 1 dependent package - 1 dependent repositories - 2.43 thousand downloads total - 0 stars on GitHub - 1 maintainer
rbr 0.8.6
RBR is a tool for masking EST sequences. It uses a statistical model to identify suspicious seque...3 versions - Latest release: over 13 years ago - 2.41 thousand downloads total - 2 maintainers
varan 0.5.1
3 versions - Latest release: over 9 years ago - 2.3 thousand downloads total - 1 maintainersamtools-conduit 0.1.0.1
3 versions - Latest release: over 9 years ago - 1 dependent repositories - 2.19 thousand downloads total - 1 maintainerBiobaseNewick 0.0.0.2
This is a simple parser for Newick trees. The parser returns a rose tree. Each node is labelled w...2 versions - Latest release: almost 7 years ago - 9 dependent repositories - 2.18 thousand downloads total - 1 stars on GitHub - 1 maintainer
BCMtools 0.1.1
2 versions - Latest release: about 9 years ago - 2.02 thousand downloads total - 1 maintainerclassify-frog 0.2.3
4 versions - Latest release: over 5 years ago - 2.02 thousand downloads total - 1 maintainerADPfusionSet 0.0.0.2
generalized Algebraic Dynamic Programming Extensions of ADPfusion for set-(like) data structures.2 versions - Latest release: over 6 years ago - 1 dependent repositories - 2.02 thousand downloads total - 2 stars on GitHub - 1 maintainer
gact 0.2
2 versions - Latest release: about 12 years ago - 1.94 thousand downloads total - 1 maintainernormalize 0.3.1.1
normalize4 versions - Latest release: almost 6 years ago - 1 dependent repositories - 1.93 thousand downloads total - 0 stars on GitHub - 1 maintainer
pipes-ordered-zip 1.2.1
provides a simple function to merge two Pipes-Producers into a new Producer that yields pairs of ...5 versions - Latest release: over 3 years ago - 1 dependent package - 8 dependent repositories - 1.93 thousand downloads total - 1 maintainer
biofastq 0.1
1 version - Latest release: over 11 years ago - 134 dependent repositories - 1.8 thousand downloads total - 1 maintainer
Related Keywords
library
108
program
70
gpl
68
bsd3
22
haskell
12
mit
10
formal-languages
8
phylogenetics
8
data-structures
6
algorithms
5
bioinformatics-pipeline
2
logic
1
theorem-provers
1
automated-deduction
1
linear-logic
1
molecular-biology
1
theorem-proving
1
smiles
1
domain-specific-language
1
bwa
1
fastq
1
fastq-format
1
genomics
1
haskell-language
1
metagenomics
1
next-generation-sequencing
1
ngs
1
samtools
1
science
1
bioinformatics-algorithms
1
single-cell
1
single-cell-analysis
1
single-cell-rna-seq
1
visualization
1
bindings
1
ffi
1
lgpl
1
ab1
1
abif
1
chromatogram
1
linguistics
1
deprecated
1
mmtf
1
protein-structure
1
structural-biology
1
chemoinformatics
1
parser
1