Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
hackage.haskell.org "bioinformatics" keyword
hyraxAbif 0.2.4.5
This library provides functionality for parsing, modifying, writing and generating ABIF files A...16 versions - Latest release: 5 months ago - 2 dependent packages - 5.65 thousand downloads total - 10 stars on GitHub - 1 maintainer
hs-samtools 0.9.0.0
7 versions - Latest release: 7 months ago - 1 dependent repositories - 116 downloads total - 0 stars on GitHub - 1 maintainerForestStructures 0.0.1.1
This library provides both static and dynamic tree and forest structures. Once a tree structure i...4 versions - Latest release: 11 months ago - 15 dependent repositories - 3.24 thousand downloads total - 3 stars on GitHub - 1 maintainer
sequence-formats 1.7.1
Contains utilities to parse and write Eigenstrat, Fasta, FreqSum, VCF, Plink and other file forma...25 versions - Latest release: about 1 year ago - 1 dependent package - 10 dependent repositories - 6.07 thousand downloads total - 1 stars on GitHub - 1 maintainer
too-many-cells 3.0.1.0
Cluster single cells and analyze cell clade relationships with colorful visualizations.29 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 10.6 thousand downloads total - 99 stars on GitHub - 1 maintainer
birch-beer 0.4.2.1
Generate a tree for displaying a hierarchy of groups with colors, scaling, and more.25 versions - Latest release: over 1 year ago - 2 dependent packages - 1 dependent repositories - 9.68 thousand downloads total - 6 stars on GitHub - 1 maintainer
NGLess 1.5.0
NGLess implements a domain-specific language for processing next generation data, particularly me...5 versions - Latest release: over 1 year ago - 294 downloads total - 143 stars on GitHub - 1 maintainer
ploterific 0.2.1.4
Basic plotting of tabular data for the command line.9 versions - Latest release: about 2 years ago - 1 dependent package - 1 dependent repositories - 1.18 thousand downloads total - 12 stars on GitHub - 1 maintainer
sequenceTools 1.5.2
The tools in this package process sequencing Data, in particular from ancient DNA sequencing libr...8 versions - Latest release: over 2 years ago - 1 dependent package - 7 dependent repositories - 2.47 thousand downloads total - 39 stars on GitHub - 1 maintainer
BlastHTTP 1.4.2
Searches for a provided nucleotide or protein sequence with the NCBI Blast REST service and retur...9 versions - Latest release: almost 3 years ago - 134 dependent repositories - 7.53 thousand downloads total - 5 stars on GitHub - 1 maintainer
BiobaseBlast 0.3.3.0
This library contains BLAST-related functionality: Parser for tabular NCBI BLAST+ output Parser...6 versions - Latest release: almost 3 years ago - 3 dependent repositories - 4.21 thousand downloads total - 3 stars on GitHub - 2 maintainers
BiobaseXNA 0.11.1.1
This is a base library for bioinformatics with emphasis on RNA and DNA primary structure as well ...34 versions - Latest release: almost 3 years ago - 12 dependent repositories - 31 thousand downloads total - 7 stars on GitHub - 1 maintainer
BiobaseFasta 0.4.0.1
Stream-based handling of FASTA files. The user selects a window size, the library then handles th...10 versions - Latest release: almost 3 years ago - 8 dependent repositories - 7.28 thousand downloads total - 4 stars on GitHub - 1 maintainer
BiobaseTypes 0.2.1.0
Types used in a number of bioinformatics libraries. linear indices energies biostring wrappers11 versions - Latest release: almost 3 years ago - 12 dependent repositories - 8.28 thousand downloads total - 3 stars on GitHub - 1 maintainer
Taxonomy 2.2.0
Haskell cabal Taxonomy libary contains tools, parsers, datastructures and visualisation for the N...6 versions - Latest release: almost 3 years ago - 15 dependent repositories - 3.99 thousand downloads total - 1 maintainer
pipes-ordered-zip 1.2.1
provides a simple function to merge two Pipes-Producers into a new Producer that yields pairs of ...5 versions - Latest release: about 3 years ago - 1 dependent package - 8 dependent repositories - 1.93 thousand downloads total - 1 maintainer
differential 0.2.0.1
Finds out whether an entity comes from different distributions (statuses).5 versions - Latest release: over 3 years ago - 1 dependent package - 1 dependent repositories - 1.43 thousand downloads total - 0 stars on GitHub - 1 maintainer
elynx 0.5.0
Please see the README on GitHub at https://github.com/dschrempf/elynx.22 versions - Latest release: over 3 years ago - 6 dependent repositories - 3.42 thousand downloads total - 9 stars on GitHub - 1 maintainer
tlynx 0.5.0
Examine, compare, and simulate phylogenetic trees in a reproducible way. Please see the README on...24 versions - Latest release: over 3 years ago - 2 dependent packages - 7 dependent repositories - 4.21 thousand downloads total - 9 stars on GitHub - 1 maintainer
slynx 0.5.0
Examine, modify, and simulate molecular sequences in a reproducible way. Please see the README on...24 versions - Latest release: over 3 years ago - 2 dependent packages - 7 dependent repositories - 4.25 thousand downloads total - 9 stars on GitHub - 1 maintainer
elynx-tree 0.5.0
Examine, compare, and simulate phylogenetic trees in a reproducible way. Please see the README on...24 versions - Latest release: over 3 years ago - 4 dependent packages - 7 dependent repositories - 4.47 thousand downloads total - 9 stars on GitHub - 1 maintainer
elynx-tools 0.5.0
Please see the README on GitHub at https://github.com/dschrempf/elynx.24 versions - Latest release: over 3 years ago - 6 dependent packages - 7 dependent repositories - 4.44 thousand downloads total - 9 stars on GitHub - 1 maintainer
elynx-seq 0.5.0
Examine, modify, and simulate molecular sequences in a reproducible way. Please see the README on...24 versions - Latest release: over 3 years ago - 3 dependent packages - 7 dependent repositories - 4.43 thousand downloads total - 9 stars on GitHub - 1 maintainer
elynx-nexus 0.5.0
Examine, modify, and simulate molecular sequences in a reproducible way. Please see the README on...20 versions - Latest release: over 3 years ago - 1 dependent package - 6 dependent repositories - 2.85 thousand downloads total - 9 stars on GitHub - 1 maintainer
elynx-markov 0.5.0
Examine, modify, and simulate molecular sequences in a reproducible way. Please see the README on...22 versions - Latest release: over 3 years ago - 1 dependent package - 6 dependent repositories - 3.37 thousand downloads total - 9 stars on GitHub - 1 maintainer
tex-join-bib 0.1.0.0
Compile separate tex files with the same bibliography.1 version - Latest release: about 4 years ago - 339 downloads total - 0 stars on GitHub - 1 maintainer
heatitup-complete 0.5.5.0
Find and annotate ITDs with assembly or read pair joining using suffix trees and characterize the...4 versions - Latest release: over 4 years ago - 1.53 thousand downloads total - 0 stars on GitHub - 1 maintainer
BiobaseEnsembl 0.2.0.1
This library contains high through put sequencing and Ensembl-related functionality: - Datastruct...3 versions - Latest release: over 4 years ago - 8 dependent repositories - 1.66 thousand downloads total - 2 stars on GitHub - 1 maintainer
StockholmAlignment 1.3.0
Libary containing parsing and visualisation functions and datastructures for Stockholm aligmnent ...10 versions - Latest release: over 4 years ago - 2 dependent repositories - 6.86 thousand downloads total - 1 maintainer
BiobaseHTTP 1.2.0
BiobaseHTTP provides functions to interface the Bioinformatics REST services - Entrez Ensembl NC...2 versions - Latest release: over 4 years ago - 1 dependent repositories - 1.21 thousand downloads total - 4 stars on GitHub - 1 maintainer
ClustalParser 1.3.0
Currently contains parsers and datatypes for: clustalw2, clustalo, mlocarna, cmalign Clustal too...14 versions - Latest release: over 4 years ago - 23 dependent repositories - 11.2 thousand downloads total - 1 maintainer
GrammarProducts 0.2.0.0
generalized Algebraic Dynamic Programming An algebra of linear and context-free grammars. This ...9 versions - Latest release: over 4 years ago - 1 dependent repositories - 7.32 thousand downloads total - 2 stars on GitHub - 1 maintainer
FormalGrammars 0.4.0.0
generalized Algebraic Dynamic Programming Context-free grammars in formal language theory are se...10 versions - Latest release: over 4 years ago - 4 dependent repositories - 8.49 thousand downloads total - 5 stars on GitHub - 1 maintainer
ADPfusion 0.6.0.0
generalized Algebraic Dynamic Programming ADPfusion combines stream-fusion (using the stream int...20 versions - Latest release: over 4 years ago - 8 dependent repositories - 19.3 thousand downloads total - 26 stars on GitHub - 1 maintainer
hierarchical-spectral-clustering 0.5.0.1
Hierarchical spectral clustering of a graph.15 versions - Latest release: over 4 years ago - 2 dependent packages - 1 dependent repositories - 5.62 thousand downloads total - 7 stars on GitHub - 1 maintainer
RNAlien 1.7.0
14 versions - Latest release: over 4 years ago - 7 dependent repositories - 9.61 thousand downloads total - 1 maintainermodularity 0.2.1.1
Find the modularity of a network.5 versions - Latest release: almost 5 years ago - 1 dependent package - 1 dependent repositories - 2.41 thousand downloads total - 0 stars on GitHub - 1 maintainer
heatitup 0.5.4.0
Find and annotate ITDs using suffix trees and characterize the exogenous segments within the spac...2 versions - Latest release: almost 5 years ago - 1 dependent repositories - 1.13 thousand downloads total - 2 stars on GitHub - 1 maintainer
mmtf 0.1.3.1
Haskell implementation of MMTF biological structure format.6 versions - Latest release: over 5 years ago - 3.2 thousand downloads total - 3 stars on GitHub - 1 maintainer
zsyntax 0.2.0.0
An automated theorem prover for Zsyntax, a logical calculus for molecular biology inspired by lin...1 version - Latest release: over 5 years ago - 1 dependent repositories - 510 downloads total - 11 stars on GitHub - 1 maintainer
BiobaseHTTPTools 1.0.0
1 version - Latest release: over 5 years ago - 809 downloads total - 1 maintainerbiohazard 1.1.1
20 versions - Latest release: over 5 years ago - 6 dependent repositories - 12.2 thousand downloads total - 1 maintainerclassify-frog 0.2.3
4 versions - Latest release: over 5 years ago - 2.02 thousand downloads total - 1 maintainerrank-product 0.2.2.0
Collects the functions pertaining to finding the rank product of a data set as well as the associ...10 versions - Latest release: over 5 years ago - 10 dependent repositories - 5 thousand downloads total - 0 stars on GitHub - 1 maintainer
collapse-duplication 0.4.0.1
Process the output of heatitup in order to collapse sequences into clones by similar ITD mutations.1 version - Latest release: over 5 years ago - 1 dependent repositories - 753 downloads total - 0 stars on GitHub - 1 maintainer
normalize 0.3.1.1
normalize4 versions - Latest release: almost 6 years ago - 1 dependent repositories - 1.92 thousand downloads total - 0 stars on GitHub - 1 maintainer
subsample 0.1.0.0
Subsample data from a uniform distribution so two different statuses for the same entity have the...1 version - Latest release: about 6 years ago - 744 downloads total - 0 stars on GitHub - 1 maintainer
integreat 0.2.2.1
Integrate difference data sources and optionally perform differential integration.1 version - Latest release: about 6 years ago - 1 dependent repositories - 804 downloads total - 1 stars on GitHub - 1 maintainer
modify-fasta 0.8.3.0
Modify fasta (and CLIP) files in several ways.13 versions - Latest release: about 6 years ago - 17 dependent repositories - 7.61 thousand downloads total - 2 stars on GitHub - 1 maintainer
SelectSequencesFromMSA 1.0.5
4 versions - Latest release: about 6 years ago - 2.76 thousand downloads total - 1 maintainerconvert-annotation 0.5.1.0
Convert the annotation of a gene to another in a delimited file using a variety of different data...6 versions - Latest release: over 6 years ago - 4 dependent repositories - 3.84 thousand downloads total - 1 stars on GitHub - 1 maintainer
cmv 1.0.8
cmv is a collection of tools for the visualisation of Hidden Markov Models (HMMV) and RNA-family ...8 versions - Latest release: over 6 years ago - 5.02 thousand downloads total - 1 maintainer
Forestry 0.0.0.1
Wikipedia on forestry: "the science and craft of creating, managing, using, conserving, and repai...1 version - Latest release: over 6 years ago - 1 dependent repositories - 1.02 thousand downloads total - 2 stars on GitHub - 1 maintainer
ViennaRNA-extras 0.0.0.1
Extra functionality on top of the ViennaRNA bindings. Please note the special license of the Vien...1 version - Latest release: over 6 years ago - 2 dependent repositories - 1.07 thousand downloads total - 1 stars on GitHub - 1 maintainer
ADPfusionForest 0.0.0.1
ADPfusion for formal languages on tree and forest structures. This library connects @ForestStruct...1 version - Latest release: over 6 years ago - 1 dependent repositories - 1.09 thousand downloads total - 1 stars on GitHub - 1 maintainer
ViennaRNA-bindings 0.233.2.0
Bindings to the ViennaRNA package, version 2.3.3. Only a partial set of bindings is provided. If...10 versions - Latest release: over 6 years ago - 1 dependent repositories - 9.1 thousand downloads total - 2 stars on GitHub - 1 maintainer
MutationOrder 0.0.1.0
Determine the most likely order in which single nucleotide mutations happened between two RNA seq...3 versions - Latest release: over 6 years ago - 2.46 thousand downloads total - 0 stars on GitHub - 1 maintainer
ADPfusionSet 0.0.0.2
generalized Algebraic Dynamic Programming Extensions of ADPfusion for set-(like) data structures.2 versions - Latest release: over 6 years ago - 1 dependent repositories - 2.01 thousand downloads total - 2 stars on GitHub - 1 maintainer
ViennaRNAParser 1.3.3
Currently contains parsers and datatypes for: RNAalifold, RNAcode, RNAdistance, RNAcofold, RNAfol...15 versions - Latest release: over 6 years ago - 24 dependent repositories - 12.3 thousand downloads total - 1 maintainer
Gene-CluEDO 0.0.0.2
Gene Cluster Evolution Determined Order Expansion of Gene Clusters and the Shortest Hamiltonian ...2 versions - Latest release: over 6 years ago - 1.8 thousand downloads total - 1 stars on GitHub - 1 maintainer
diversity 0.8.1.0
Calculates the diversity of each position in a fasta file.26 versions - Latest release: over 6 years ago - 2 dependent packages - 18 dependent repositories - 18.3 thousand downloads total - 1 stars on GitHub - 1 maintainer
smiles 0.2.0.0
Full support of OpenSMILES and SMARTS specifications for Haskell4 versions - Latest release: almost 7 years ago - 2.72 thousand downloads total - 6 stars on GitHub - 1 maintainer
vcf 0.9.0
1 version - Latest release: almost 7 years ago - 1 dependent repositories - 918 downloads total - 1 maintainerEntrezHTTP 1.0.4
EntrezHTTP provides functions to query the NCBI entrez REST interface. There are multiple differ...5 versions - Latest release: almost 7 years ago - 13 dependent repositories - 4.29 thousand downloads total - 4 stars on GitHub - 1 maintainer
BiobaseNewick 0.0.0.2
This is a simple parser for Newick trees. The parser returns a rose tree. Each node is labelled w...2 versions - Latest release: almost 7 years ago - 9 dependent repositories - 2.17 thousand downloads total - 1 stars on GitHub - 1 maintainer
BioHMM 1.2.0
Libary containing parsing and visualisation functions and datastructures for Hidden Markov Models...20 versions - Latest release: almost 7 years ago - 14.9 thousand downloads total - 1 maintainer
AlignmentAlgorithms 0.1.0.0
generalized Algebraic Dynamic Programming A selection of (sequence) alignment algorithms. Both t...5 versions - Latest release: about 7 years ago - 1 dependent repositories - 4.52 thousand downloads total - 1 stars on GitHub - 1 maintainer
BiobaseInfernal 0.8.1.0
Provides import and export facilities for Infernal/Rfam data formats. We include Stockholm, CM, v...16 versions - Latest release: about 7 years ago - 1 dependent repositories - 15.8 thousand downloads total - 4 stars on GitHub - 1 maintainer
TaxonomyTools 1.0.1
2 versions - Latest release: over 7 years ago - 2 dependent repositories - 1.76 thousand downloads total - 1 maintainerblosum 0.1.1.4
BLOSUM matrix generator with the addition of any generic characters for special amino acids4 versions - Latest release: over 7 years ago - 16 dependent repositories - 3.21 thousand downloads total - 1 stars on GitHub - 1 maintainer
memexml 0.0.3
Haskell cabal libary for parsing Meme motif finder xml output3 versions - Latest release: over 8 years ago - 2.62 thousand downloads total - 3 stars on GitHub - 1 maintainer
hemokit 0.6.6
This package allows reading raw data from the Emotiv EPOC EEG devices. It is inspired and based ...12 versions - Latest release: almost 9 years ago - 1 dependent repositories - 8.43 thousand downloads total - 31 stars on GitHub - 2 maintainers
biostockholm 0.3.4
10 versions - Latest release: almost 9 years ago - 7.65 thousand downloads total - 1 maintainerGenussFold 0.0.0.2
generalized Algebraic Dynamic Programming Genus-1 RNA pseudoknot grammars implemented with a mul...2 versions - Latest release: almost 9 years ago - 1 dependent repositories - 1.73 thousand downloads total - 4 stars on GitHub - 1 maintainer
biophd 0.0.8
Library for reading phd sequence files9 versions - Latest release: almost 9 years ago - 97 dependent repositories - 7.3 thousand downloads total - 4 stars on GitHub - 1 maintainer
BCMtools 0.1.1
2 versions - Latest release: about 9 years ago - 2.02 thousand downloads total - 1 maintainerseqloc-datafiles 0.4.2
10 versions - Latest release: about 9 years ago - 6.83 thousand downloads total - 1 maintainersamtools-conduit 0.1.0.1
3 versions - Latest release: over 9 years ago - 1 dependent repositories - 2.19 thousand downloads total - 1 maintainerseqloc 0.6.1
14 versions - Latest release: over 9 years ago - 133 dependent repositories - 11.1 thousand downloads total - 1 maintainervaran 0.5.1
3 versions - Latest release: over 9 years ago - 2.3 thousand downloads total - 1 maintainersamtools 0.2.4
15 versions - Latest release: over 9 years ago - 1 dependent repositories - 11.1 thousand downloads total - 1 maintainerblastxml 0.3.2
4 versions - Latest release: over 9 years ago - 133 dependent repositories - 4.57 thousand downloads total - 1 maintainerGenbank 1.0.3
Haskell cabal Genbank libary contains tools, parser and datastructures for the NCBI (National Cen...4 versions - Latest release: over 9 years ago - 16 dependent repositories - 4.31 thousand downloads total - 1 maintainer
RNAdesign 0.1.2.2
The RNA sequence design problem asks for a single sequence that readily folds into the (one or mo...5 versions - Latest release: over 10 years ago - 4.47 thousand downloads total - 1 maintainer
RNAdraw 0.2.0.1
1 version - Latest release: over 10 years ago - 1.46 thousand downloads total - 1 maintainerDnaProteinAlignment 0.0.0.1
1 version - Latest release: over 10 years ago - 1.41 thousand downloads total - 1 maintainerRNAFold 1.99.3.4
RNAfold v2 using the ADPfusion library. The RNAfold algorithm is used to determine how fast we ca...6 versions - Latest release: over 10 years ago - 1 dependent repositories - 6.2 thousand downloads total - 1 maintainer
flowsim 0.3.5
7 versions - Latest release: over 10 years ago - 5.89 thousand downloads total - 1 maintainerbamstats 0.4
4 versions - Latest release: over 10 years ago - 4.11 thousand downloads total - 1 maintainerbiosff 0.3.7
9 versions - Latest release: over 10 years ago - 93 dependent repositories - 8.96 thousand downloads total - 1 maintainerflower 0.7.2
13 versions - Latest release: over 10 years ago - 9.56 thousand downloads total - 1 maintainerphybin 0.2.11
This package provides a libary and executable for dealing with Newick tree files. It can do simp...9 versions - Latest release: almost 11 years ago - 1 dependent repositories - 6.75 thousand downloads total - 1 maintainer
a50 0.5
a50 - a simple tool for graphing genome coverage and fragmentation. Reads files of contigs, and ...3 versions - Latest release: almost 11 years ago - 3.83 thousand downloads total - 1 maintainer
bio 0.5.3
This is a collection of data structures and algorithms useful for building bioinformatics-related...16 versions - Latest release: almost 11 years ago - 2 dependent repositories - 14.1 thousand downloads total - 2 maintainers
adp-multi-monadiccp 0.2.1
3 versions - Latest release: almost 11 years ago - 2.91 thousand downloads total - 1 maintaineradp-multi 0.2.3
6 versions - Latest release: almost 11 years ago - 1 dependent repositories - 5.37 thousand downloads total - 1 maintainerBiobaseTurner 0.3.1.1
13 versions - Latest release: about 11 years ago - 2 dependent repositories - 12 thousand downloads total - 1 maintainerBiobaseVienna 0.3.0.0
11 versions - Latest release: about 11 years ago - 1 dependent repositories - 10.5 thousand downloads total - 1 maintainerbiofasta 0.0.3
3 versions - Latest release: over 11 years ago - 134 dependent repositories - 4.39 thousand downloads total - 1 maintainerbiocore 0.3.1
4 versions - Latest release: over 11 years ago - 135 dependent repositories - 6.08 thousand downloads total - 1 maintainer
Related Keywords
library
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program
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gpl
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bsd3
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haskell
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mit
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phylogenetics
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formal-languages
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data-structures
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algorithms
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bioinformatics-pipeline
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linear-logic
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automated-deduction
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theorem-provers
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logic
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structural-biology
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protein-structure
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mmtf
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molecular-biology
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theorem-proving
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bindings
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ffi
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chemoinformatics
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parser
1
smiles
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deprecated
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linguistics
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lgpl
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ab1
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abif
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chromatogram
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bioinformatics-algorithms
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single-cell
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single-cell-analysis
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single-cell-rna-seq
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visualization
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domain-specific-language
1
bwa
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fastq
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fastq-format
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genomics
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haskell-language
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metagenomics
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next-generation-sequencing
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ngs
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samtools
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science
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