Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

hub.docker.com "pipeline" keyword

Top 1.1% on hub.docker.com
nfcore/proteomicslfq 1.0.0
A Docker Container for label free quantification for proteomics data.
3 versions - Latest release: over 3 years ago - 5.44 thousand downloads total - 32 stars on GitHub
Top 1.6% on hub.docker.com
nfcore/scrnaseq 1.1.0
A Docker Container for the nf-core/scrnaseq pipeline.
4 versions - Latest release: about 3 years ago - 7.71 thousand downloads total - 113 stars on GitHub
Top 1.6% on hub.docker.com
nfcore/ddamsproteomics dev
A Docker image for the nf-core/ddamsproteomics pipeline.
2 versions - Latest release: over 5 years ago - 965 downloads total - 4 stars on GitHub
Top 1.5% on hub.docker.com
nfcore/mnaseseq 1.0.0
A Docker container for the nf-core/mnaseseq pipeline.
3 versions - Latest release: almost 2 years ago - 1.17 thousand downloads total - 10 stars on GitHub
Top 0.5% on hub.docker.com
nfcore/rnaseq 1.4.2
Docker Image for nf-core/rnaseq project.
9 versions - Latest release: over 4 years ago - 660 thousand downloads total - 751 stars on GitHub
Top 1.1% on hub.docker.com
nfcore/mhcquant 1.6.0
A Docker image for nf-core/mhcquant
16 versions - Latest release: over 3 years ago - 5.95 thousand downloads total - 29 stars on GitHub
Top 0.5% on hub.docker.com
nfcore/sarek 2.7.2
A Docker container for the nf-core/sarek pipeline
10 versions - Latest release: almost 2 years ago - 1.06 million downloads total - 294 stars on GitHub
Top 1.1% on hub.docker.com
nfcore/clipseq 1.0.0
CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and mul...
3 versions - Latest release: about 3 years ago - 5.58 thousand downloads total - 17 stars on GitHub
Top 1.4% on hub.docker.com
nfcore/coproid 1.1.1
A Docker image for the nf-core/coproid pipeline.
5 versions - Latest release: over 1 year ago - 1.89 thousand downloads total - 8 stars on GitHub
Top 1.1% on hub.docker.com
nfcore/diaproteomics 1.2.4
A Docker container for nf-core/diaproteomics
9 versions - Latest release: about 3 years ago - 6.26 thousand downloads total - 12 stars on GitHub
Top 0.3% on hub.docker.com
nfcore/eager 2.5.1
A Docker image for the nf-core/eager pipeline.
30 versions - Latest release: 2 months ago - 1 dependent repositories - 41.7 thousand downloads total - 122 stars on GitHub
Top 0.8% on hub.docker.com
nfcore/smrnaseq 1.1.0
A Docker container for the nf-core/smrnaseq pipeline.
4 versions - Latest release: almost 3 years ago - 41.7 thousand downloads total - 64 stars on GitHub
Top 1.4% on hub.docker.com
nfcore/neutronstar 1.0.0
A Docker Container for nf-core/neutronstar
3 versions - Latest release: over 4 years ago - 1.31 thousand downloads total - 4 stars on GitHub
Top 1.6% on hub.docker.com
nfcore/denovohybrid dev
A Docker Image for the nf-core/denovohybrid pipeline
2 versions - Latest release: over 4 years ago - 950 downloads total - 6 stars on GitHub
Top 1.2% on hub.docker.com
nfcore/bacass 1.1.1
A Docker container for the nf-core/bacass pipeline.
5 versions - Latest release: over 3 years ago - 3.39 thousand downloads total - 50 stars on GitHub
nfcore/crisprvar
A Docker container for the nf-core/crisprvar pipeline
Latest release: about 1 month ago - 0 downloads total - 5 stars on GitHub
Top 1.7% on hub.docker.com
nfcore/vipr latest
A docker container for VIPR
2 versions - Latest release: over 5 years ago - 566 downloads total - 14 stars on GitHub
Top 0.8% on hub.docker.com
nfcore/kmermaid dev
A Docker container for the nf-core/kmermaid pipelin
2 versions - Latest release: about 3 years ago - 21.8 thousand downloads total - 18 stars on GitHub
Top 1.2% on hub.docker.com
nfcore/bcellmagic 1.2.0
A preliminary container for the bcellmagic pipeline
5 versions - Latest release: over 4 years ago - 2.6 thousand downloads total - 35 stars on GitHub
Top 1.3% on hub.docker.com
nfcore/slamseq 1.0.0
A docker image for nf-core/slamseq
3 versions - Latest release: almost 4 years ago - 31.4 thousand downloads total - 4 stars on GitHub
Top 1.5% on hub.docker.com
nfcore/lncpipe dev
A Docker image for nf-core/lncpipe
2 versions - Latest release: over 5 years ago - 1.15 thousand downloads total - 28 stars on GitHub
Top 2.2% on hub.docker.com
nfcore/smartseq2 dev
A docker container for the nf-core/smartseq2 pipeline.
2 versions - Latest release: about 3 years ago - 1.73 thousand downloads total - 15 stars on GitHub
Top 1.2% on hub.docker.com
nfcore/epitopeprediction 1.1.0
A docker image for nf-core/epitopeprediction
4 versions - Latest release: over 3 years ago - 3.92 thousand downloads total - 27 stars on GitHub
Top 1.2% on hub.docker.com
nfcore/deepvariant dev
A Docker image for the nf-core/deepvariant pipeline.
3 versions - Latest release: over 5 years ago - 3.75 thousand downloads total - 40 stars on GitHub
Related Keywords
nextflow 24 nf-core 24 workflow 24 genome-assembly 4 proteomics 4 variant-calling 3 denovo-assembly 3 openms 3 10xgenomics 2 bioinformatics 2 metagenomics 2 10x-genomics 2 rna-seq 2 differential-expression 2 assembly 2 denovo 2 hybrid-assembly 2 nanopore 2 adna 2 rna 2 nanopore-sequencing 2 viral-metagenomics 1 viral-genomics 1 viral-ngs 1 virus 1 viruses 1 google 1 viral 1 bacterial-genomes 1 ngs-pipeline 1 supernova 1 linked-reads 1 smrna-seq 1 small-rna 1 dna 1 deep-variant 1 mhc-binding-prediction 1 epitope-prediction 1 epitope 1 transcriptome 1 rna-seq-analysis 1 non-coding 1 long-non-coding 1 lncrna 1 transcriptomics 1 slamseq 1 quantseq 1 repseq 1 immunorepertoire 1 immcantation 1 b-cell 1 airr 1 kmer-frequency-count 1 kmer-counting 1 kmer 1 k-mer 1 population-genetics 1 genomics 1 gatk4 1 containers 1 conda 1 cancer 1 annotation 1 peptides 1 mhc 1 mass-spectrometry 1 nucleosome-positioning 1 nucleosome-maps 1 nucleosome 1 mnase-seq 1 shotgun-ms 1 star-solo 1 single-cell 1 kallisto 1 cellranger 1 bustools 1 alevin 1 label-free-quantification 1 pathogen-genomics 1 genome 1 ancientdna 1 ancient-dna-analysis 1 dia-proteomics 1 data-independent-proteomics 1 microbiome 1 coprolite 1 ancient-dna 1 rna-rbp-interactions 1 peak-calling 1 clip-seq 1 clip 1 whole-genome-sequencing 1 whole-exome-sequencing 1 target-panels 1 somatic 1 reproducible-research 1 pre-processing 1 next-generation-sequencing 1 germline 1