Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
proxy.golang.org "genomics" keyword
github.com/bjeight/fastats v0.6.0
Very simple statistics from fasta files10 versions - Latest release: about 1 month ago - 0 stars on GitHub
Top 9.6% on proxy.golang.org
16 versions - Latest release: about 1 month ago - 583 stars on GitHub
github.com/ekg/vcflib v1.0.10
C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings16 versions - Latest release: about 1 month ago - 583 stars on GitHub
Top 5.9% on proxy.golang.org
34 versions - Latest release: about 1 month ago - 624 stars on GitHub
github.com/tanghaibao/goatools v1.4.4
Python library to handle Gene Ontology (GO) terms34 versions - Latest release: about 1 month ago - 624 stars on GitHub
Top 7.4% on proxy.golang.org
3 versions - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 21 stars on GitHub
github.com/will-rowe/ntHash v0.4.0
Package ntHash is a port of ntHash (https://github.com/bcgsc/ntHash) recursive hash function for ...3 versions - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 21 stars on GitHub
Top 6.9% on proxy.golang.org
19 versions - Latest release: about 3 years ago - 17 stars on GitHub
github.com/tamerh/biobtree v1.8.0
A bioinformatics tool to search, map and retrieve identifiers, keywords and attributes19 versions - Latest release: about 3 years ago - 17 stars on GitHub
github.com/genomicsplc/variantkey v0.0.0-20230608125306-4ee491c11cd1
Numerical Encoding for Human Genetic Variants1 version - Latest release: 12 months ago - 34 stars on GitHub
Top 8.2% on proxy.golang.org
6 versions - Latest release: over 4 years ago - 50 stars on GitHub
github.com/tanghaibao/allhic v0.9.13
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes6 versions - Latest release: over 4 years ago - 50 stars on GitHub
Top 3.6% on proxy.golang.org
29 versions - Latest release: almost 3 years ago - 2 dependent packages - 1 dependent repositories - 199 stars on GitHub
github.com/brentp/goleft v0.2.5
goleft is a collection of bioinformatics tools distributed under MIT license in a single static b...29 versions - Latest release: almost 3 years ago - 2 dependent packages - 1 dependent repositories - 199 stars on GitHub
Top 8.2% on proxy.golang.org
17 versions - Latest release: 3 months ago - 224 stars on GitHub
github.com/projectglow/glow v2.0.0+incompatible
An open-source toolkit for large-scale genomic analysis17 versions - Latest release: 3 months ago - 224 stars on GitHub
Top 8.2% on proxy.golang.org
1 version - Latest release: over 5 years ago - 0 stars on GitHub
github.com/danielschuette/goblast v0.0.0-20180902220623-caddab69f3f6
Package goblast provides a high level interface for accessing the NCBI BLAST API. API documentat...1 version - Latest release: over 5 years ago - 0 stars on GitHub
Top 9.6% on proxy.golang.org
57 versions - Latest release: 4 months ago - 428 stars on GitHub
github.com/mdshw5/pyfaidx v0.8.1
Efficient pythonic random access to fasta subsequences57 versions - Latest release: 4 months ago - 428 stars on GitHub
Top 9.6% on proxy.golang.org
16 versions - Latest release: about 1 month ago - 583 stars on GitHub
github.com/vcflib/vcflib v1.0.10
C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings16 versions - Latest release: about 1 month ago - 583 stars on GitHub
Top 8.2% on proxy.golang.org
1 version - Latest release: over 7 years ago - 39 stars on GitHub
github.com/brentp/bigly v0.2.0
a pileup library that embraces the huge1 version - Latest release: over 7 years ago - 39 stars on GitHub
Top 9.6% on proxy.golang.org
31 versions - Latest release: 4 months ago - 594 stars on GitHub
github.com/BenLangmead/bowtie2 v2.5.3+incompatible
A fast and sensitive gapped read aligner31 versions - Latest release: 4 months ago - 594 stars on GitHub
Top 9.6% on proxy.golang.org
31 versions - Latest release: 4 months ago - 594 stars on GitHub
github.com/benlangmead/bowtie2 v2.5.3+incompatible
A fast and sensitive gapped read aligner31 versions - Latest release: 4 months ago - 594 stars on GitHub
Top 8.2% on proxy.golang.org
4 versions - Latest release: 12 months ago - 10 stars on GitHub
github.com/chanzuckerberg/czid-cli v0.0.0-20230616203825-4fb33c540c26
CZID (formerly IDseq) infectious disease command-line interface4 versions - Latest release: 12 months ago - 10 stars on GitHub
Top 8.2% on proxy.golang.org
1 version - Latest release: over 5 years ago - 0 stars on GitHub
github.com/DanielSchuette/goblast v0.0.0-20180902220623-caddab69f3f6
Package goblast provides a high level interface for accessing the NCBI BLAST API. API documentat...1 version - Latest release: over 5 years ago - 0 stars on GitHub
Top 8.2% on proxy.golang.org
1 version - Latest release: about 3 years ago - 0 stars on GitHub
github.com/cmdoret/strangerseq v0.0.0-20210305134445-d3d09aacc80f
Generate DNA sequences minimizing microhomology1 version - Latest release: about 3 years ago - 0 stars on GitHub
github.com/carbocation/bgen v0.0.0-20221111060333-9d6b4fb78b02
BGEN file format reader for parsing UK Biobank and other genotype data in Go1 version - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 0 stars on GitHub
Top 4.9% on proxy.golang.org
3 versions - Latest release: over 2 years ago - 8 dependent packages - 10 dependent repositories - 21 stars on GitHub
github.com/will-rowe/nthash v0.4.0
Package nthash is a port of ntHash (https://github.com/bcgsc/ntHash) recursive hash function for ...3 versions - Latest release: over 2 years ago - 8 dependent packages - 10 dependent repositories - 21 stars on GitHub
Top 8.2% on proxy.golang.org
20 versions - Latest release: almost 3 years ago - 187 stars on GitHub
github.com/brentp/smoove v0.2.8
structural variant calling and genotyping with existing tools, but, smoothly.20 versions - Latest release: almost 3 years ago - 187 stars on GitHub
Top 8.2% on proxy.golang.org
2 versions - Latest release: about 1 year ago - 57 stars on GitHub
github.com/will-rowe/hulk v0.0.0-20230525084446-cbd5ca3dac59
Histosketching Using Little Kmers2 versions - Latest release: about 1 year ago - 57 stars on GitHub
Top 6.7% on proxy.golang.org
1 version - Latest release: about 4 years ago - 21 stars on GitHub
github.com/shenwei356/nthash v0.2.0
Package nthash is a port of ntHash (https://github.com/bcgsc/ntHash) recursive hash function for ...1 version - Latest release: about 4 years ago - 21 stars on GitHub
Top 9.6% on proxy.golang.org
27 versions - Latest release: 8 months ago - 233 stars on GitHub
github.com/brentp/somalier v0.2.19
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart ...27 versions - Latest release: 8 months ago - 233 stars on GitHub
Top 9.6% on proxy.golang.org
21 versions - Latest release: 2 months ago - 2,998 stars on GitHub
github.com/google/deepvariant v1.6.1
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from...21 versions - Latest release: 2 months ago - 2,998 stars on GitHub
Top 9.6% on proxy.golang.org
32 versions - Latest release: about 3 years ago - 288 stars on GitHub
github.com/luntergroup/octopus v0.7.4
Bayesian haplotype-based mutation calling32 versions - Latest release: about 3 years ago - 288 stars on GitHub
Top 9.6% on proxy.golang.org
65 versions - Latest release: 5 months ago - 96 stars on GitHub
github.com/telatin/seqfu2 v1.20.3
:rocket: seqfu - Sequece Fastx Utilities65 versions - Latest release: 5 months ago - 96 stars on GitHub
Top 8.2% on proxy.golang.org
github.com/aws/amazon-genomics-cli v1.6.0
11 versions - Latest release: over 1 year ago - 132 stars on GitHub
Top 5.8% on proxy.golang.org
5 versions - Latest release: about 1 month ago - 1,374 stars on GitHub
github.com/lh3/bwa v0.7.18
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)5 versions - Latest release: about 1 month ago - 1,374 stars on GitHub
Top 7.0% on proxy.golang.org
38 versions - Latest release: over 1 year ago - 1 dependent package - 320 stars on GitHub
github.com/brentp/vcfanno v0.3.5
vcfanno is a command-line application and an api for annotating intervals (bed or vcf).38 versions - Latest release: over 1 year ago - 1 dependent package - 320 stars on GitHub
Top 9.6% on proxy.golang.org
99 versions - Latest release: 4 months ago - 343 stars on GitHub
github.com/brentp/cyvcf2 v0.30.28
cython + htslib == fast VCF and BCF processing99 versions - Latest release: 4 months ago - 343 stars on GitHub
Top 8.2% on proxy.golang.org
3 versions - Latest release: almost 6 years ago - 11 stars on GitHub
github.com/brentp/excord v0.2.4
extract SV signal from a BAM3 versions - Latest release: almost 6 years ago - 11 stars on GitHub
Top 7.2% on proxy.golang.org
19 versions - Latest release: over 1 year ago - 1 dependent package - 2 stars on GitHub
github.com/tikz/bcov v0.8.29
App for the indexing, querying, comparison and benchmark of read depth and coverage of human gene...19 versions - Latest release: over 1 year ago - 1 dependent package - 2 stars on GitHub
Top 8.2% on proxy.golang.org
1 version - Latest release: about 4 years ago - 1 stars on GitHub
github.com/brentp/crampex v0.0.0-20200504140441-3147fa3f4c69
Package crampex allows us to read and write cram files in go using a system call to samtools view...1 version - Latest release: about 4 years ago - 1 stars on GitHub
Related Keywords
bioinformatics
15
golang
5
dna
3
hashing-algorithm
3
biology
3
variant-calling
3
fasta
3
ngs
2
structural-variation
2
read-aligners
2
c-plus-plus
2
go
2
cli-app
2
blast-url-api
2
machine-learning
2
sequencing
2
vcf
2
variants
2
vcf-manipulation
2
genotyping
2
haplotypecaller
2
genome
2
medicine
1
deep-learning
1
cancer-genomics
1
sketching
1
microbiome
1
hashing
1
bioinfomatics
1
lumpy
1
ukbiobank
1
bgen
1
k-mer
1
dna-sequences
1
idseq
1
cli
1
fdr
1
fdr-benjamini
1
samtools
1
python
1
protein
1
htslib
1
cython
1
annotation
1
sequence-alignment
1
fm-index
1
aws
1
fastq
1
bioinformatics-tool
1
bioconda
1
somatic-variants
1
single-cell
1
phasing
1
haplotypes
1
de-novo-mutation
1
tensorflow
1
science
1
deepvariant
1
deep-neural-network
1
sidak
1
genome-scaffolding
1
genome-assembly
1
genetic-algorithm
1
contigs
1
variantkey
1
variant-normalization
1
rsid
1
reference-position
1
reference-genome
1
reference-allele
1
position
1
nucleotides
1
human-genetic-variants
1
genetic
1
identifiers
1
chromosome
1
base
1
alternate-allele
1
mapping
1
indexing
1
bgzf
1
fisher-tests
1
gene-ontology
1
gene-set-enrichment
1
goslim-terms
1
spark
1
regression
1
population-genetics
1
holm-sidak
1
gwas
1
delta
1
depth
1
coverage
1
polyploid
1
pipeline
1
lachesis
1
inter-contig-links
1
hi-c
1
heterozygous
1