Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
proxy.golang.org "bioinformatics" keyword
Top 9.6% on proxy.golang.org
57 versions - Latest release: 4 months ago - 428 stars on GitHub
github.com/mdshw5/pyfaidx v0.8.1
Efficient pythonic random access to fasta subsequences57 versions - Latest release: 4 months ago - 428 stars on GitHub
Top 3.6% on proxy.golang.org
29 versions - Latest release: almost 3 years ago - 2 dependent packages - 1 dependent repositories - 199 stars on GitHub
github.com/brentp/goleft v0.2.5
goleft is a collection of bioinformatics tools distributed under MIT license in a single static b...29 versions - Latest release: almost 3 years ago - 2 dependent packages - 1 dependent repositories - 199 stars on GitHub
Top 9.6% on proxy.golang.org
32 versions - Latest release: 4 months ago - 591 stars on GitHub
github.com/danforthcenter/plantcv v4.2.1+incompatible
Plant phenotyping with image analysis32 versions - Latest release: 4 months ago - 591 stars on GitHub
Top 7.8% on proxy.golang.org
52 versions - Latest release: 5 months ago - 2 dependent packages - 2 dependent repositories - 10 stars on GitHub
github.com/gnames/gnverifier v1.1.8
Copyright © 2020 Dmitry Mozzherin <[email protected]> Permission is hereby granted, free of c...52 versions - Latest release: 5 months ago - 2 dependent packages - 2 dependent repositories - 10 stars on GitHub
Top 9.5% on proxy.golang.org
Latest release: about 1 month ago - 90 stars on GitHub
github.com/kindlyops/havengrc/worker
☁️Haven GRC - easier governance, risk, and compliance 👨⚕️👮♀️🦸♀️🕵️♀️👩🔬Latest release: about 1 month ago - 90 stars on GitHub
Top 5.6% on proxy.golang.org
1 version - Latest release: over 4 years ago - 85 stars on GitHub
github.com/kindlyops/havengrc/havenapi v0.0.0-20190910211514-1af33b570e9d
☁️Haven GRC - easier governance, risk, and compliance 👨⚕️👮♀️🦸♀️🕵️♀️👩🔬1 version - Latest release: over 4 years ago - 85 stars on GitHub
Top 5.5% on proxy.golang.org
3 versions - Latest release: almost 6 years ago - 85 stars on GitHub
github.com/kindlyops/havengrc v0.0.3
☁️Haven GRC - easier governance, risk, and compliance 👨⚕️👮♀️🦸♀️🕵️♀️👩🔬3 versions - Latest release: almost 6 years ago - 85 stars on GitHub
github.com/bebop/poly v0.31.1 💰
Package poly is a Go package for engineering organisms. Synthetic biology has a software problem...57 versions - Latest release: 4 months ago - 1 dependent package - 588 stars on GitHub
Top 6.4% on proxy.golang.org
1 version - Latest release: almost 4 years ago - 3 dependent packages - 4 dependent repositories - 35 stars on GitHub
github.com/pbenner/gonetics v1.0.0
Go / Golang Bioinformatics Library1 version - Latest release: almost 4 years ago - 3 dependent packages - 4 dependent repositories - 35 stars on GitHub
Top 6.3% on proxy.golang.org
17 versions - Latest release: 9 months ago - 654 stars on GitHub
github.com/biopandas/biopandas v0.5.0
Working with molecular structures in pandas DataFrames17 versions - Latest release: 9 months ago - 654 stars on GitHub
Top 6.3% on proxy.golang.org
17 versions - Latest release: 9 months ago - 654 stars on GitHub
github.com/BioPandas/biopandas v0.5.0
Working with molecular structures in pandas DataFrames17 versions - Latest release: 9 months ago - 654 stars on GitHub
Top 6.6% on proxy.golang.org
2 versions - Latest release: almost 2 years ago - 20 stars on GitHub
github.com/lattice-automation/repp v1.0.0
Repository-based plasmid design2 versions - Latest release: almost 2 years ago - 20 stars on GitHub
Top 7.8% on proxy.golang.org
2 versions - Latest release: over 7 years ago - 2 dependent packages - 4 dependent repositories - 4 stars on GitHub
github.com/grailbio/hts v1.0.1
Fork of biogo high throughput sequencing repository. Many performance improvements.2 versions - Latest release: over 7 years ago - 2 dependent packages - 4 dependent repositories - 4 stars on GitHub
Top 4.8% on proxy.golang.org
15 versions - Latest release: 2 days ago - 984 stars on GitHub
github.com/shenwei356/seqkit/v2 v2.8.2
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation15 versions - Latest release: 2 days ago - 984 stars on GitHub
Top 2.8% on proxy.golang.org
84 versions - Latest release: almost 3 years ago - 1 dependent package - 2 dependent repositories - 981 stars on GitHub
github.com/shenwei356/seqkit v0.16.1
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation84 versions - Latest release: almost 3 years ago - 1 dependent package - 2 dependent repositories - 981 stars on GitHub
Top 7.7% on proxy.golang.org
4 versions - Latest release: over 4 years ago - 1 stars on GitHub
github.com/ubccr/treat v0.0.4
Trypanosome RNA Editing Alignment Tool4 versions - Latest release: over 4 years ago - 1 stars on GitHub
Top 10.0% on proxy.golang.org
51 versions - Latest release: over 2 years ago - 4 stars on GitHub
github.com/neocortix/ncscli v1.2.3
ncscli is the command-line and python interface for Neocortix Cloud Services51 versions - Latest release: over 2 years ago - 4 stars on GitHub
Top 5.0% on proxy.golang.org
69 versions - Latest release: 7 months ago - 10 dependent packages - 4 dependent repositories - 31 stars on GitHub
github.com/gnames/gnparser v1.9.0
Package gnparser implements the main use-case of the project -- parsing scientific names. There a...69 versions - Latest release: 7 months ago - 10 dependent packages - 4 dependent repositories - 31 stars on GitHub
github.com/fluhus/biostuff v0.1.19
Computational biology packages for Go.19 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 8 stars on GitHub
Top 6.8% on proxy.golang.org
38 versions - Latest release: about 1 month ago - 8 dependent packages - 5 dependent repositories - 5 stars on
github.com/elixir-oslo/crypt4gh v1.10.1
Package main is the main package of Crypt4GH command-line tool, containing "generate", "encrypt" ...38 versions - Latest release: about 1 month ago - 8 dependent packages - 5 dependent repositories - 5 stars on
Top 8.2% on proxy.golang.org
1 version - Latest release: over 7 years ago - 39 stars on GitHub
github.com/brentp/bigly v0.2.0
a pileup library that embraces the huge1 version - Latest release: over 7 years ago - 39 stars on GitHub
Top 9.6% on proxy.golang.org
31 versions - Latest release: 4 months ago - 594 stars on GitHub
github.com/BenLangmead/bowtie2 v2.5.3+incompatible
A fast and sensitive gapped read aligner31 versions - Latest release: 4 months ago - 594 stars on GitHub
Top 9.6% on proxy.golang.org
31 versions - Latest release: 4 months ago - 594 stars on GitHub
github.com/benlangmead/bowtie2 v2.5.3+incompatible
A fast and sensitive gapped read aligner31 versions - Latest release: 4 months ago - 594 stars on GitHub
Top 8.2% on proxy.golang.org
1 version - Latest release: over 4 years ago - 0 stars on GitHub
github.com/bkaraceylan/goophy v0.0.0-20191207203044-639af57472ae
Goophy is a simple phylogenetic analysis program written in Go.1 version - Latest release: over 4 years ago - 0 stars on GitHub
Top 4.4% on proxy.golang.org
1 version - Latest release: almost 4 years ago - 2 dependent packages - 4 dependent repositories - 69 stars on GitHub
github.com/grailbio/bio v0.0.0-20200818183458-d966d878d120
Bioinformatic infrastructure libraries1 version - Latest release: almost 4 years ago - 2 dependent packages - 4 dependent repositories - 69 stars on GitHub
Top 8.2% on proxy.golang.org
1 version - Latest release: over 4 years ago - 8 stars on GitHub
github.com/grailbio/gql v0.0.0-20191101200750-9d3c4bc01cc9
Query language for bioinformatic data1 version - Latest release: over 4 years ago - 8 stars on GitHub
github.com/zxjsdp/nodefinder-go v0.0.0-20170919044334-8aa131ccd750
Go implementation of NodeFinder program.1 version - Latest release: over 6 years ago - 0 stars on GitHub
Top 3.5% on proxy.golang.org
101 versions - Latest release: 16 days ago - 1 dependent repositories - 18,426 stars on GitHub
github.com/plotly/dash v2.17.0+incompatible 💰
Data Apps & Dashboards for Python. No JavaScript Required.101 versions - Latest release: 16 days ago - 1 dependent repositories - 18,426 stars on GitHub
Top 9.6% on proxy.golang.org
1 version - Latest release: over 4 years ago - 82 stars on GitHub
github.com/hci-unihd/plant-seg v1.0.0
A tool for cell instance aware segmentation in densely packed 3D volumetric images1 version - Latest release: over 4 years ago - 82 stars on GitHub
Top 8.2% on proxy.golang.org
15 versions - Latest release: about 1 year ago - 1,345 stars on GitHub
github.com/allenai/scispacy v0.6.0
A full spaCy pipeline and models for scientific/biomedical documents.15 versions - Latest release: about 1 year ago - 1,345 stars on GitHub
Top 7.8% on proxy.golang.org
1 version - Latest release: over 2 years ago - 1 stars on GitHub
github.com/lucblassel/fastago v0.1.0
Copyright © 2021 LUC BLASSEL Licensed under the Apache License, Version 2.0 (the "License"); you...1 version - Latest release: over 2 years ago - 1 stars on GitHub
github.com/lmtani/pumbaa v0.10.3
Command-line interface for Cromwell server16 versions - Latest release: 6 months ago - 11 stars on GitHub
Top 9.6% on proxy.golang.org
11 versions - Latest release: over 2 years ago - 851 stars on GitHub
github.com/kexinhuang12345/DeepPurpose v0.1.5
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinforma...11 versions - Latest release: over 2 years ago - 851 stars on GitHub
Top 9.6% on proxy.golang.org
11 versions - Latest release: over 2 years ago - 855 stars on GitHub
github.com/kexinhuang12345/deeppurpose v0.1.5
A Deep Learning Toolkit for DTI, Drug Property, PPI, DDI, Protein Function Prediction (Bioinforma...11 versions - Latest release: over 2 years ago - 855 stars on GitHub
Top 4.6% on proxy.golang.org
187 versions - Latest release: 4 months ago - 1,982 stars on GitHub
github.com/nextflow-io/nextflow v23.10.1+incompatible
A DSL for data-driven computational pipelines187 versions - Latest release: 4 months ago - 1,982 stars on GitHub
Top 9.6% on proxy.golang.org
7 versions - Latest release: 14 days ago - 23 stars on GitHub
github.com/fmalmeida/ngs-preprocess v2.7.1+incompatible
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies7 versions - Latest release: 14 days ago - 23 stars on GitHub
Top 8.2% on proxy.golang.org
3 versions - Latest release: over 5 years ago - 2 stars on GitHub
github.com/informationsea/shellflow v0.1.3
Shell script like workflow managmenet software3 versions - Latest release: over 5 years ago - 2 stars on GitHub
Top 8.2% on proxy.golang.org
1 version - Latest release: about 5 years ago - 5 stars on GitHub
github.com/charlesreid1/go-rosalind v0.0.0-20190426205824-a170c342dc4d
A Go (golang) package for solving bioinformatics problems.1 version - Latest release: about 5 years ago - 5 stars on GitHub
Top 8.1% on proxy.golang.org
1 version - Latest release: over 5 years ago - 1 stars on GitHub
github.com/mnsmar/rnadna v0.0.0-20190117010927-3e1cf8f80845
Convert sequence representation RNA - DNA for FASTA/Q1 version - Latest release: over 5 years ago - 1 stars on GitHub
Top 8.2% on proxy.golang.org
1 version - Latest release: almost 8 years ago - 0 stars on GitHub
github.com/blachlylab/gff3 v0.0.0-20160627164308-ddf9086b0e4c
Package gff3 implements data structure that represents GFF3 formatted (http://www.sequenceontolog...1 version - Latest release: almost 8 years ago - 0 stars on GitHub
Top 5.3% on proxy.golang.org
50 versions - Latest release: 2 months ago - 245 stars on GitHub
github.com/shenwei356/taxonkit v0.16.0
A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files ...50 versions - Latest release: 2 months ago - 245 stars on GitHub
Top 5.0% on proxy.golang.org
30 versions - Latest release: 6 months ago - 692 stars on GitHub
github.com/shenwei356/rush v0.5.4 💰
A cross-platform command-line tool for executing jobs in parallel30 versions - Latest release: 6 months ago - 692 stars on GitHub
Top 3.0% on proxy.golang.org
1 version - Latest release: over 2 years ago - 13 dependent packages - 9 dependent repositories - 51 stars on GitHub
github.com/grailbio/go-dicom v0.0.0-20211105193521-b0e216a1c5cd
Package dicom provides DICOM reader and writer. Directory dicomutil contains a sample DICOM file...1 version - Latest release: over 2 years ago - 13 dependent packages - 9 dependent repositories - 51 stars on GitHub
Top 8.2% on proxy.golang.org
1 version - Latest release: about 7 years ago - 0 stars on GitHub
github.com/mnsmar/htsdb v0.0.0-20170315231228-ba125ca8c300
Package htsdb wraps a database connection to provide a convenient loop interface for reading data...1 version - Latest release: about 7 years ago - 0 stars on GitHub
Top 3.0% on proxy.golang.org
36 versions - Latest release: 2 months ago - 12 dependent packages - 15 dependent repositories - 80 stars on GitHub
github.com/shenwei356/bio v0.13.3 💰
A lightweight and high-performance bioinformatics package in Golang36 versions - Latest release: 2 months ago - 12 dependent packages - 15 dependent repositories - 80 stars on GitHub
Top 8.0% on proxy.golang.org
1 version - Latest release: almost 2 years ago - 1 dependent package - 2 dependent repositories - 5 stars on GitHub
github.com/tikz/bio v0.0.0-20220725145119-1dae789d2218
Go library for parsing biological data formats and tool outputs from UniProt, PDB (Structure/Mode...1 version - Latest release: almost 2 years ago - 1 dependent package - 2 dependent repositories - 5 stars on GitHub
Top 8.2% on proxy.golang.org
1 version - Latest release: about 5 years ago - 19 stars on GitHub
github.com/otiai10/yacle v0.0.0-20190319061257-da0b44ceaba2
Yet Another CWL Engine by Golang1 version - Latest release: about 5 years ago - 19 stars on GitHub
Top 4.8% on proxy.golang.org
60 versions - Latest release: 4 months ago - 10 dependent packages - 7 dependent repositories - 34 stars on GitHub
github.com/gnames/gnfinder v1.1.4
GNfinder finds scientific names in UTF8 texts, PDF files, MS Word/Excel documents, URLs etc.60 versions - Latest release: 4 months ago - 10 dependent packages - 7 dependent repositories - 34 stars on GitHub
Top 8.0% on proxy.golang.org
31 versions - Latest release: 7 months ago - 39 stars on GitHub
github.com/labdao/plex v0.11.1
Plex Lab Exchange. Client for running scientific workflows on decentralized infrastructure31 versions - Latest release: 7 months ago - 39 stars on GitHub
Top 8.2% on proxy.golang.org
2 versions - Latest release: almost 2 years ago - 20 stars on GitHub
github.com/Lattice-Automation/repp v1.0.0
Repository-based plasmid design2 versions - Latest release: almost 2 years ago - 20 stars on GitHub
Top 8.2% on proxy.golang.org
1 version - Latest release: about 8 years ago - 22 stars on GitHub
github.com/shenwei356/countminsketch v0.0.0-20160519110546-b4482acb35b1
Package countminsketch is an implementation of Count-Min Sketch in Golang. http://github.com/she...1 version - Latest release: about 8 years ago - 22 stars on GitHub
Top 9.6% on proxy.golang.org
6 versions - Latest release: over 1 year ago - 656 stars on GitHub
github.com/awslabs/dgl-lifesci v0.3.2
Python package for graph neural networks in chemistry and biology6 versions - Latest release: over 1 year ago - 656 stars on GitHub
github.com/dissipative/ribosome v0.0.0-20230817222117-593b3487ef6a
The Ribosome package is a Go library designed for efficient transcription and translation of DNA ...3 versions - Latest release: 9 months ago - 0 stars on GitHub
Top 9.6% on proxy.golang.org
31 versions - Latest release: 2 months ago - 365 stars on GitHub
github.com/oschwengers/bakta v1.9.3
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids31 versions - Latest release: 2 months ago - 365 stars on GitHub
Top 9.6% on proxy.golang.org
27 versions - Latest release: 8 months ago - 233 stars on GitHub
github.com/brentp/somalier v0.2.19
fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart ...27 versions - Latest release: 8 months ago - 233 stars on GitHub
Top 9.6% on proxy.golang.org
54 versions - Latest release: almost 5 years ago - 373 stars on GitHub
github.com/Illumina/manta v1.6.0
Structural variant and indel caller for mapped sequencing data54 versions - Latest release: almost 5 years ago - 373 stars on GitHub
Top 9.6% on proxy.golang.org
54 versions - Latest release: almost 5 years ago - 373 stars on GitHub
github.com/illumina/manta v1.6.0
Structural variant and indel caller for mapped sequencing data54 versions - Latest release: almost 5 years ago - 373 stars on GitHub
Top 9.6% on proxy.golang.org
21 versions - Latest release: 2 months ago - 2,998 stars on GitHub
github.com/google/deepvariant v1.6.1
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from...21 versions - Latest release: 2 months ago - 2,998 stars on GitHub
Top 9.6% on proxy.golang.org
32 versions - Latest release: about 3 years ago - 288 stars on GitHub
github.com/luntergroup/octopus v0.7.4
Bayesian haplotype-based mutation calling32 versions - Latest release: about 3 years ago - 288 stars on GitHub
Top 9.6% on proxy.golang.org
65 versions - Latest release: 5 months ago - 96 stars on GitHub
github.com/telatin/seqfu2 v1.20.3
:rocket: seqfu - Sequece Fastx Utilities65 versions - Latest release: 5 months ago - 96 stars on GitHub
Top 9.6% on proxy.golang.org
14 versions - Latest release: almost 6 years ago - 104 stars on GitHub
github.com/mdshw5/fastqp v0.3.4
Simple FASTQ quality assessment using Python14 versions - Latest release: almost 6 years ago - 104 stars on GitHub
Top 9.6% on proxy.golang.org
11 versions - Latest release: over 6 years ago - 202 stars on GitHub
github.com/OpenGene/AfterQC v0.9.7
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data11 versions - Latest release: over 6 years ago - 202 stars on GitHub
Top 9.6% on proxy.golang.org
11 versions - Latest release: over 6 years ago - 202 stars on GitHub
github.com/opengene/afterqc v0.9.7
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data11 versions - Latest release: over 6 years ago - 202 stars on GitHub
Top 3.3% on proxy.golang.org
77 versions - Latest release: 2 months ago - 1 dependent package - 1 dependent repositories - 827 stars on GitHub
github.com/shenwei356/csvtk v0.30.0 💰
A cross-platform, efficient and practical CSV/TSV toolkit in Golang77 versions - Latest release: 2 months ago - 1 dependent package - 1 dependent repositories - 827 stars on GitHub
Top 9.6% on proxy.golang.org
2 versions - Latest release: over 1 year ago - 6 stars on GitHub
github.com/davidbhr/compactionanalyzer v1.0.2
Evaluates the fiber orientation and intensity around cells that compact collagen tissue as measur...2 versions - Latest release: over 1 year ago - 6 stars on GitHub
Top 9.6% on proxy.golang.org
2 versions - Latest release: over 1 year ago - 6 stars on GitHub
github.com/davidbhr/CompactionAnalyzer v1.0.2
Evaluates the fiber orientation and intensity around cells that compact collagen tissue as measur...2 versions - Latest release: over 1 year ago - 6 stars on GitHub
Top 7.6% on proxy.golang.org
Latest release: 12 days ago - 1 stars on GitHub
github.com/lambertsbennett/GOHencode
One-hot encoding of biological sequence data in Go.Latest release: 12 days ago - 1 stars on GitHub
Top 7.6% on proxy.golang.org
Latest release: 12 days ago - 0 stars on GitHub
github.com/tikz/glycodist
3D distance from N-glycosylation sites to other residues, for all published glycoproteins. Eviden...Latest release: 12 days ago - 0 stars on GitHub
Top 7.0% on proxy.golang.org
38 versions - Latest release: about 1 month ago - 6 dependent packages - 1 dependent repositories - 6 stars on GitHub
github.com/neicnordic/crypt4gh v1.10.1
Package main is the main package of Crypt4GH command-line tool, containing "generate", "encrypt" ...38 versions - Latest release: about 1 month ago - 6 dependent packages - 1 dependent repositories - 6 stars on GitHub
Top 3.3% on proxy.golang.org
204 versions - Latest release: about 2 months ago - 3 dependent packages - 3 dependent repositories - 237 stars on GitHub
github.com/filecoin-project/bacalhau v1.3.0
Compute over Data framework for public, transparent, and optionally verifiable computation204 versions - Latest release: about 2 months ago - 3 dependent packages - 3 dependent repositories - 237 stars on GitHub
Top 9.6% on proxy.golang.org
30 versions - Latest release: 5 months ago - 329 stars on GitHub
github.com/haddocking/pdb-tools v2.5.1+incompatible
A dependency-free cross-platform swiss army knife for PDB files.30 versions - Latest release: 5 months ago - 329 stars on GitHub
Top 8.2% on proxy.golang.org
1 version - Latest release: over 5 years ago - 1 stars on GitHub
github.com/DanielSchuette/bioinformatics v0.0.0-20190119231906-85335403684f
A Collection of Bioinformatics Tools, written in Go 🐼1 version - Latest release: over 5 years ago - 1 stars on GitHub
Top 8.2% on proxy.golang.org
15 versions - Latest release: about 4 years ago - 87 stars on GitHub
github.com/nesvilab/philosopher v3.2.3+incompatible
A complete toolkit for shotgun proteomics data analysis15 versions - Latest release: about 4 years ago - 87 stars on GitHub
Top 8.2% on proxy.golang.org
13 versions - Latest release: over 4 years ago - 87 stars on GitHub
github.com/Nesvilab/philosopher v2.1.2+incompatible
A complete toolkit for shotgun proteomics data analysis13 versions - Latest release: over 4 years ago - 87 stars on GitHub
Top 4.2% on proxy.golang.org
40 versions - Latest release: over 2 years ago - 1 dependent package - 2 dependent repositories - 984 stars on GitHub
github.com/scipipe/scipipe v0.12.0
Package scipipe is a library for writing scientific workflows (sometimes also called "pipelines")...40 versions - Latest release: over 2 years ago - 1 dependent package - 2 dependent repositories - 984 stars on GitHub
Top 5.2% on proxy.golang.org
23 versions - Latest release: almost 3 years ago - 559 stars on GitHub
github.com/Koeng101/poly v0.12.0 💰
Package poly is a Go package for engineering organisms. Synthetic biology has a software problem...23 versions - Latest release: almost 3 years ago - 559 stars on GitHub
Top 5.8% on proxy.golang.org
5 versions - Latest release: about 1 month ago - 1,374 stars on GitHub
github.com/lh3/bwa v0.7.18
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)5 versions - Latest release: about 1 month ago - 1,374 stars on GitHub
Top 3.3% on proxy.golang.org
55 versions - Latest release: 5 months ago - 4 dependent packages - 1 dependent repositories - 534 stars on GitHub
github.com/TimothyStiles/poly v0.30.0 💰
Package poly is a Go package for engineering organisms. Synthetic biology has a software problem...55 versions - Latest release: 5 months ago - 4 dependent packages - 1 dependent repositories - 534 stars on GitHub
Top 8.0% on proxy.golang.org
Latest release: 16 days ago - 0 stars on GitHub
github.com/lambertsbennett/gokmer
Concurrent K-mer expansion for sequence data in Go.Latest release: 16 days ago - 0 stars on GitHub
Top 8.2% on proxy.golang.org
1 version - Latest release: over 5 years ago - 1 stars on GitHub
github.com/danielschuette/bioinformatics v0.0.0-20190119231906-85335403684f
A Collection of Bioinformatics Tools, written in Go 🐼1 version - Latest release: over 5 years ago - 1 stars on GitHub
Top 8.0% on proxy.golang.org
Latest release: 17 days ago - 0 stars on GitHub
github.com/danny-the-scientist/gene-expression-parser
Read a specific NCBI gene ID from a given XML, returning expression data in tissuesLatest release: 17 days ago - 0 stars on GitHub
Top 8.2% on proxy.golang.org
57 versions - Latest release: 4 months ago - 425 stars on GitHub
github.com/timothystiles/poly v0.31.1 💰
A Go package for engineering organisms.57 versions - Latest release: 4 months ago - 425 stars on GitHub
Top 9.5% on proxy.golang.org
2 versions - Latest release: 4 months ago - 3 stars on GitHub
github.com/koeng101/dnadesign/external v0.0.0-20240119234551-3aab61ca0722
Package external contains functions that interact with outside programs. The primary way that ex...2 versions - Latest release: 4 months ago - 3 stars on GitHub
Top 7.0% on proxy.golang.org
38 versions - Latest release: over 1 year ago - 1 dependent package - 320 stars on GitHub
github.com/brentp/vcfanno v0.3.5
vcfanno is a command-line application and an api for annotating intervals (bed or vcf).38 versions - Latest release: over 1 year ago - 1 dependent package - 320 stars on GitHub
Top 9.6% on proxy.golang.org
99 versions - Latest release: 4 months ago - 343 stars on GitHub
github.com/brentp/cyvcf2 v0.30.28
cython + htslib == fast VCF and BCF processing99 versions - Latest release: 4 months ago - 343 stars on GitHub
Top 8.2% on proxy.golang.org
21 versions - Latest release: over 5 years ago - 30 stars on GitHub
github.com/otiai10/hotsub v0.10.0
Command line tool to run batch jobs concurrently with ETL framework on AWS or other cloud computi...21 versions - Latest release: over 5 years ago - 30 stars on GitHub
Top 6.5% on proxy.golang.org
1 version - Latest release: over 5 years ago - 1 dependent package - 1 dependent repositories - 21 stars on GitHub
github.com/otiai10/cwl.go v0.1.0
CWL (and input file) parser for Golang, used by github.com/otiai10/yacle1 version - Latest release: over 5 years ago - 1 dependent package - 1 dependent repositories - 21 stars on GitHub
Top 8.3% on proxy.golang.org
Latest release: 17 days ago - 0 stars on GitHub
github.com/lambertsbennett/gohencode
One-hot encoding of biological sequence data in Go.Latest release: 17 days ago - 0 stars on GitHub
Top 8.2% on proxy.golang.org
1 version - Latest release: over 3 years ago - 3 stars on GitHub
github.com/edualb/godmitri v0.0.0
This project provides utilities for chemistry. The name of the project was inspired by periodic t...1 version - Latest release: over 3 years ago - 3 stars on GitHub
Top 6.5% on proxy.golang.org
6 versions - Latest release: over 1 year ago - 12 stars on GitHub
github.com/feliixx/gotranseq v0.4.0
convert nucleic sequence in protein sequence6 versions - Latest release: over 1 year ago - 12 stars on GitHub
Top 7.6% on proxy.golang.org
Latest release: 18 days ago - 0 stars on GitHub
github.com/0xnu/nwunsch 💰
Needleman–Wunsch algorithm implementation in Go.Latest release: 18 days ago - 0 stars on GitHub
Top 8.3% on proxy.golang.org
Latest release: 18 days ago - 0 stars on GitHub
github.com/kupihleba/bioinformatics
Algorithms in BioinformaticsLatest release: 18 days ago - 0 stars on GitHub
Top 8.2% on proxy.golang.org
1 version - Latest release: over 5 years ago - 3 stars on GitHub
github.com/cnuge/go-fasta v0.0.0-20181023164310-897f0b8f805c
A tool for manipulating fasta files and obtaining new sequence data from NCBI in fasta format1 version - Latest release: over 5 years ago - 3 stars on GitHub
Top 8.2% on proxy.golang.org
1 version - Latest release: over 5 years ago - 3 stars on GitHub
github.com/CNuge/go-fasta v0.0.0-20181023164310-897f0b8f805c
A tool for manipulating fasta files and obtaining new sequence data from NCBI in fasta format1 version - Latest release: over 5 years ago - 3 stars on GitHub
Top 4.9% on proxy.golang.org
8 versions - Latest release: over 1 year ago - 2 dependent packages - 5 dependent repositories - 19 stars on GitHub
github.com/shenwei356/bwt v0.6.1
Burrows-Wheeler Transform and FM-index in golang8 versions - Latest release: over 1 year ago - 2 dependent packages - 5 dependent repositories - 19 stars on GitHub
Top 8.2% on proxy.golang.org
1 version - Latest release: almost 8 years ago - 15 stars on GitHub
github.com/shenwei356/gtaxon v0.0.0-20160724062939-fd9d89b0a9d6
gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LC...1 version - Latest release: almost 8 years ago - 15 stars on GitHub
Top 8.2% on proxy.golang.org
1 version - Latest release: about 4 years ago - 1 stars on GitHub
github.com/brentp/crampex v0.0.0-20200504140441-3147fa3f4c69
Package crampex allows us to read and write cram files in go using a system call to samtools view...1 version - Latest release: about 4 years ago - 1 stars on GitHub
Top 9.6% on proxy.golang.org
1 version - Latest release: almost 6 years ago - 225 stars on GitHub
github.com/biosyntax/biosyntax v1.0.0
Syntax highlighting for computational biology1 version - Latest release: almost 6 years ago - 225 stars on GitHub
Top 9.6% on proxy.golang.org
1 version - Latest release: almost 6 years ago - 225 stars on GitHub
github.com/bioSyntax/bioSyntax v1.0.0
Syntax highlighting for computational biology1 version - Latest release: almost 6 years ago - 225 stars on GitHub
Top 7.2% on proxy.golang.org
1 version - Latest release: almost 8 years ago - 1 dependent package - 1 dependent repositories - 9 stars on GitHub
github.com/aebruno/nwalgo v0.0.0-20160817130739-4a232086e3ad
Needleman-Wunsch Alignment in Go1 version - Latest release: almost 8 years ago - 1 dependent package - 1 dependent repositories - 9 stars on GitHub
Related Keywords
golang
28
go
18
genomics
15
fasta
14
dna
11
computational-biology
11
fastq
8
python
7
workflow
6
plasmids
6
deep-learning
5
vendor-management
5
risk-management
5
risk-assessment
5
hipaa
5
group-cognition
5
gdpr
5
fisma
5
finra
5
dna-barcode
5
genbank
5
genetic-engineering
5
pdb
5
molecular-biology
5
synbio
5
synthetic-biology
5
drug-discovery
5
ngs
5
sequencing
5
toolkit
5
cross-platform
5
data-science
5
asset-management
5
compliance
5
devops
5
devsecops
5
elm
5
ferpa
5
pipeline
4
bam
4
vcf
4
sequence-hashing
4
primer-design
4
golden-gate
4
quality-control
4
dna-barcoding
4
sequence-alignment
4
codon-optimizer
4
bioengineering
4
data-analysis
4
molecule
3
cli
3
wdl
3
sam
3
tool
3
sequence
3
structural-bioinformatics
3
cwl
3
cheminformatics
3
protein
3
engineering-organisms
3
taxonomy
3
ncbi
3
cytoscape
3
bioinformatics-pipeline
3
workflow-engine
3
bioconda
3
data-visualization
3
cell
2
cell-mechanics
2
fm-index
2
tissue-analysis
2
structure
2
orientation
2
microscopy
2
imaging
2
p2p
2
common-workflow-language
2
collagen
2
compaction
2
image-processing
2
decentralized
2
r
2
contractility
2
fiber
2
fibrosis
2
lca
2
rna
2
taxdump
2
mass-spectrometry
2
ms-data
2
proteomics
2
reproducible-science
2
reproducible-research
2
nextflow
2
preprocessing
2
docker
2
dataflow
2
aws
2
virtual-screening
2