Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "Biology" keyword
shapr 0.0.2
SHAPR - An AI approach to predict 3D cell shapes from 2D microscopic images2 versions - Latest release: over 2 years ago - 1 dependent repositories - 22 downloads last month - 12 stars on GitHub - 1 maintainer
shapr-torch 0.0.1
SHAPR: Code for "Capturing Shape Information with Multi-Scale Topological Loss Terms for 3D Recon...1 version - Latest release: about 2 years ago - 1 dependent repositories - 21 downloads last month - 30 stars on GitHub - 1 maintainer
shapeae 0.0.1
SHAPR - An AI approach to predict 3D cell shapes from 2D microscopic images1 version - Latest release: over 2 years ago - 1 dependent repositories - 13 downloads last month - 12 stars on GitHub - 1 maintainer
pyparsebio v1.1.2
Pure-python parralelizable parsing of biological multipoint images3 versions - Latest release: about 4 years ago - 1 dependent repositories - 14 downloads last month - 2 stars on GitHub - 1 maintainer
pyentrezid 1.5.8 💰
Converts UniProt, HGNC, and Ensembl Transcript Ids to Entrez Gene Id. Also, converts acce...25 versions - Latest release: almost 8 years ago - 1 dependent repositories - 119 downloads last month - 42 stars on GitHub - 1 maintainer
pannenkoek 0.1.6
A wrapper for Qiime and LEfSe analysis. Split an OTU table by time and make certain comparisons w...8 versions - Latest release: about 9 years ago - 1 dependent repositories - 20 downloads last month - 1 maintainer
mbio 1.1.1
A Python Package for Biology from Wenzhi Mao1 version - Latest release: about 8 years ago - 1 dependent repositories - 11 downloads last month - 2 stars on GitHub - 1 maintainer
instantdl 1.0.5
An easy and convenient Deep Learning pipeline for image segmentation and classification3 versions - Latest release: about 3 years ago - 1 dependent repositories - 29 downloads last month - 39 stars on GitHub - 1 maintainer
gutentag 1.0
A package to create a user-defined, tag-based genetic sequence lab database in Django1 version - Latest release: almost 15 years ago - 2 dependent repositories - 7 downloads last month - 1 maintainer
gsea-incontext 0.9.6
GSEA-InContext Gene Set Enrichment Analysis in Python3 versions - Latest release: almost 5 years ago - 1 dependent repositories - 7 downloads last month - 10 stars on GitHub - 1 maintainer
Top 8.9% on pypi.org
27 versions - Latest release: almost 6 years ago - 1 dependent package - 8 dependent repositories - 114 downloads last month - 87 stars on GitHub - 1 maintainer
goenrich 1.10.2
GO enrichment with python -- pandas meets networkx27 versions - Latest release: almost 6 years ago - 1 dependent package - 8 dependent repositories - 114 downloads last month - 87 stars on GitHub - 1 maintainer
fishratio 1.1.3
Calculate the ratio and logarithmic value of species contained in several genus of a family to al...5 versions - Latest release: almost 3 years ago - 1 dependent repositories - 18 downloads last month - 0 stars on GitHub - 1 maintainer
fermy 0.5.2
Fermy is a toolkit to empower fermentation data analysis from Pandas DataFrame.14 versions - Latest release: 3 months ago - 1 dependent repositories - 113 downloads last month - 0 stars on GitLab.com - 1 maintainer
Top 9.6% on pypi.org
12 versions - Latest release: 3 months ago - 1 dependent package - 3 dependent repositories - 5.05 thousand downloads last month - 13 stars on GitHub - 1 maintainer
faker-biology 0.6.4
Fake data from biology12 versions - Latest release: 3 months ago - 1 dependent package - 3 dependent repositories - 5.05 thousand downloads last month - 13 stars on GitHub - 1 maintainer
clovars 0.2.3
Clonal Variability Simulation11 versions - Latest release: about 2 years ago - 1 dependent repositories - 88 downloads last month - 1 stars on GitHub - 1 maintainer
biopii 0.2.3
BioPII (Biology Parallel Integral Image) is a Python package for performing sliding window analys...11 versions - Latest release: 9 months ago - 78 downloads last month - 0 stars on GitHub - 1 maintainer
biorxiv-retriever 0.20.1
Simple retriever for Biorxiv articles5 versions - Latest release: almost 4 years ago - 1 dependent repositories - 46 downloads last month - 7 stars on GitHub - 1 maintainer
biobuilder 0.1.0
BioBuilder is used to create biology model in both all-atom and coarse-grained resolution1 version - Latest release: about 3 years ago - 1 dependent repositories - 18 downloads last month - 1 maintainer
bebi103 0.1.20
Python utilities for the Caltech course BE/Bi 103: Data Analysis in the Biological Sciences.74 versions - Latest release: 3 months ago - 4 dependent repositories - 556 downloads last month - 15 stars on GitHub - 1 maintainer
open-medical 0.0.1
Given a query this project downloads articles from PubMed website and then do the following analy...1 version - Latest release: almost 2 years ago - 1 dependent repositories - 15 downloads last month - 2 maintainers
Top 3.1% on pypi.org
73 versions - Latest release: about 1 year ago - 17 dependent packages - 87 dependent repositories - 6.94 thousand downloads last month - 271 stars on GitHub - 1 maintainer
bioservices 1.11.2
Access to Biological Web Services from Python73 versions - Latest release: about 1 year ago - 17 dependent packages - 87 dependent repositories - 6.94 thousand downloads last month - 271 stars on GitHub - 1 maintainer
gsea-incontext-notk 0.1.3
GSEA-InContext Gene Set Enrichment Analysis in Python4 versions - Latest release: over 4 years ago - 1 dependent repositories - 40 downloads last month - 0 stars on GitHub - 1 maintainer
Top 2.3% on pypi.org
40 versions - Latest release: 5 days ago - 28 dependent packages - 78 dependent repositories - 14.5 thousand downloads last month - 506 stars on GitHub - 1 maintainer
gseapy 1.1.3
Gene Set Enrichment Analysis in Python40 versions - Latest release: 5 days ago - 28 dependent packages - 78 dependent repositories - 14.5 thousand downloads last month - 506 stars on GitHub - 1 maintainer
pixanalyzer 0.2.0
Analyzing pixcel change from movies to evaluate deformation of objects15 versions - Latest release: 7 months ago - 117 downloads last month - 0 stars on GitHub - 2 maintainers
mnest 0.1.0
MNEST (Multi-agent Neuro Evolution Simulation Toolkit) is a software framework designed to model ...1 version - Latest release: about 1 year ago - 24 downloads last month - 4 stars on GitHub - 2 maintainers
cryptkeeper 0.1
Package for predicting functional components of DNA sequences1 version - Latest release: 5 months ago - 6 downloads last month - 1 stars on GitHub - 1 maintainer
pyprairieview 0.0.2
Darik & Doug Do A Thing3 versions - Latest release: about 1 year ago - 33 downloads last month - 2 maintainers
lzgraphs 1.0.2
An Implementation of LZ76 Based Graphs for Repertoire Representation and Analysis11 versions - Latest release: about 2 months ago - 51 downloads last month - 4 stars on GitHub - 2 maintainers
fluopi 1.0.0
Module to manage and analyze time-lapse data obtained with fluopi equipment1 version - Latest release: over 6 years ago - 1 dependent repositories - 8 downloads last month - 26 stars on GitHub - 1 maintainer
wlogdate 1.0.2
Log Transformation Improves Dating of Phylogenies2 versions - Latest release: over 3 years ago - 1 dependent repositories - 8 downloads last month - 2 maintainers
fastroot 1.0.4
5 versions - Latest release: over 3 years ago - 1 dependent repositories - 25 downloads last month - 1 maintainerpromotercalculator 1.2.2
Salis Lab's promoter-calculator (Barrick Lab Fork)4 versions - Latest release: 5 months ago - 1 dependent repositories - 21 downloads last month - 1 stars on GitHub - 2 maintainers
ncbiparser 1.1.0
Search and fetch the Species Latin names, Accessory Number, Sequence Length, Division, Collection...2 versions - Latest release: about 2 years ago - 1 dependent repositories - 6 downloads last month - 3 stars on GitHub - 1 maintainer
midap 0.3.13 removed
A package for cell segmentation and tracking.1 version - Latest release: 6 months ago - 2 maintainers
nleval 0.1.0.dev7 removed
A Python toolkit for biological network learning evaluation6 versions - Latest release: about 1 year ago - 178 downloads last month - 1 maintainer
open-medical8 0.0.1 removed
Given a query this project downloads articles from PubMed website and then do the following analy...1 version - Latest release: almost 2 years ago
open-medical7 0.0.1 removed
Given a query this project downloads articles from PubMed website and then do the following analy...1 version - Latest release: almost 2 years ago
open-medical6 0.0.1 removed
Given a query this project downloads articles from PubMed website and then do the following analy...1 version - Latest release: almost 2 years ago
open-medical5 0.0.1 removed
Given a query this project downloads articles from PubMed website and then do the following analy...1 version - Latest release: almost 2 years ago
open-medical3 0.0.1 removed
Given a query this project downloads articles from PubMed website and then do the following analy...1 version - Latest release: almost 2 years ago
open-medical2 0.0.1 removed
Given a query this project downloads articles from PubMed website and then do the following analy...1 version - Latest release: almost 2 years ago
open-medical1 0.0.1 removed
Given a query this project downloads articles from PubMed website and then do the following analy...1 version - Latest release: almost 2 years ago
Related Keywords
NLP
8
BioMedical
8
Summarization
8
NER
8
Modeling
7
Topic
7
Knowledge
7
Bioinformatics
5
Learning
5
Graph
5
TagsPubMed
5
Gene Ontology
4
GO
4
Enrichment
4
Computational Biology
4
Deep
4
Computational
4
Python
3
PubMed
3
DNA
3
Neuroscience
2
RNA
2
Barrick
2
Bio
2
CLI
2
bioinformatics
2
Phylogenetics
2
Evolution
2
Grapg
2
Ensembl
2
deep-learning
2
NCBI
2
Microscopy
2
Gene
2
HGNC
2
UniProt
2
Evaluation
1
simulation
1
multi-agent
1
neuro-evolution
1
AI
1
ML
1
Physics
1
Computation
1
Complex Systems
1
biological-simulations
1
complex-systems
1
emergent-behavior
1
physics-simulation
1
q-learning
1
reinforcement-learning
1
Parallel
1
Cryptkeeper
1
Microbiome
1
BioMart
1
GeneProf
1
ChEMBL
1
ChemSpider
1
PathwayCommons
1
Rhea
1
biomodels
1
chebi
1
chembl
1
eutils
1
kegg
1
muscle
1
python
1
quickgo
1
unichem
1
uniprot
1
wikipathways
1
enrichment-analysis
1
gsea
1
python3
1
rust
1
Images
1
DIY
1
topological-machine-learning
1
topological-data-analysis
1
promoter
1
promoter-calculator
1
calculator
1
Salis
1
Parser
1
Segmentation
1
Tracking
1
Data
1
Processing
1
Classification
1
Machine
1
Network
1
Repositories
1
segmentation
1
pytorch
1
persistent-homology
1
image-reconstruction
1
cubical-complexes
1
RBS
1
Bruker
1
PrairieView
1