Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "Proteomics" keyword
omicscope 1.3.13
OmicScope: from quantitative proteomics to systems biology.26 versions - Latest release: 4 months ago - 114 downloads last month - 0 stars on GitHub - 1 maintainer
pytrapment 1.0.1
pytrapment: create an entrapment database for proteomic mass spectrometry analysis1 version - Latest release: about 3 years ago - 1 dependent repositories - 5 downloads last month - 1 stars on GitHub - 1 maintainer
ibaqpy 0.0.2
Python package to compute intensity base absolute expression values1 version - Latest release: about 1 year ago - 21 downloads last month - 6 stars on GitHub - 1 maintainer
ion-networks 2.0.200821
Analysis of LC-[...]-MSMS data with ion-networks2 versions - Latest release: almost 4 years ago - 1 dependent repositories - 17 downloads last month - 2 stars on GitHub - 1 maintainer
quantms-utils
Python package with scripts and helpers for the QuantMS workflow2 versions - 152 downloads last month - 0 stars on GitHub - 1 maintainer
filterframes 0.1.3
A very simple DTASelect-Filter.txt parser.4 versions - Latest release: 12 months ago - 1 dependent package - 39 downloads last month - 2 stars on GitHub - 1 maintainer
ampcombi 0.2.2
A parsing tool for AMP tools.11 versions - Latest release: 3 months ago - 73 downloads last month - 4 stars on GitHub - 2 maintainers
pmultiqc 0.0.24
Python package for quality control of proteomics datasets, based on multiqc package22 versions - Latest release: 3 months ago - 1 dependent repositories - 174 downloads last month - 9 stars on GitHub - 1 maintainer
ymap 2.0.8
An automated method to map yeast variants to protein modifications and functional regions11 versions - Latest release: over 7 years ago - 1 dependent repositories - 108 downloads last month - 5 stars on GitHub - 1 maintainer
xirt 1.2.41
xiRT: Multi-dimensional Retention Time Prediction for Linear and Crosslinked Peptides.14 versions - Latest release: about 3 years ago - 1 dependent repositories - 146 downloads last month - 8 stars on GitHub - 1 maintainer
deeplc 2.2.36
DeepLC: Retention time prediction for (modified) peptides using Deep Learning.93 versions - Latest release: about 2 months ago - 2 dependent packages - 1 dependent repositories - 1.77 thousand downloads last month - 46 stars on GitHub - 3 maintainers
mztabpy 0.0.1
Python package to handle mztab files1 version - Latest release: almost 2 years ago - 16 downloads last month - 2 stars on GitHub - 1 maintainer
peptide-chef 0.1.0 removed
Peptide Chef: A Python-based Tool for Proteomic Analyses and Datavisulization7 versions - Latest release: over 1 year ago - 1 dependent repositories - 32 downloads last month - 1 maintainer
ms2pip 3.13.0
MS²PIP: MS² Peak Intensity Prediction28 versions - Latest release: 3 months ago - 2 dependent packages - 1 dependent repositories - 1.91 thousand downloads last month - 32 stars on GitHub - 2 maintainers
Related Keywords
machine learning
3
proteomics
3
Label-free
3
deep-learning
2
MultiQC
2
quality control
2
peptides
2
Retention Time Prediction
1
Crosslinking
1
xiRT
1
yeast
1
systems-biology
1
python
1
protein-structure
1
protein-protein-interaction
1
protein-modification
1
protein-domains
1
mutated-proteins
1
yMap
1
Gene Ontology
1
Genomics
1
Protein-Protein Interactions
1
fasta2speclib
1
spectral library
1
spectrum
1
peak intensity prediction
1
MS2PIP
1
DataAnalysis
1
Python
1
retention-time
1
peptide-modification
1
prediction
1
retention time
1
deep learning
1
DeepLC
1
machine-learning
1
crosslinking
1
Peptides
1
Chromatography
1
Streamlit
1
Parser
1
PASER
1
IP2
1
quantms
1
Data-independent acquisition
1
DIA
1
Mass spectrometry
1
MS
1
absolute quantification
1
statistics
1
mass-spectrometry
1
fasta
1
uniprot
1
Systems Biology
1
Differential Expression
1
Omics
1
Secondary Structures
1
Proteins domains
1
PostTransational-Modifications (PTMs)
1
Proteins variants
1
Biofinformatics
1
genes
1
antimicrobial-peptides
1
antimicrobial-genes-annotation
1
amp
1
Functional annotation
1
Formatting
1
MMSeqs2Standardization
1
Diamond
1
Antimicrobial peptides
1
Protein
1
Peptide
1
DTASelect-filter
1