Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "Systems Biology" keyword
omicscope 1.3.13
OmicScope: from quantitative proteomics to systems biology.26 versions - Latest release: 3 months ago - 55 downloads last month - 0 stars on GitHub - 1 maintainer
bio2bel-chebi 0.2.1
A package for converting ChEBI to BEL12 versions - Latest release: over 5 years ago - 1 dependent repositories - 119 downloads last month - 1 stars on GitHub - 2 maintainers
bel-commons 0.3.1
A web application exposing core PyBEL functionalities2 versions - Latest release: about 4 years ago - 1 dependent repositories - 22 downloads last month - 4 stars on GitHub - 1 maintainer
pathme-viewer 0.0.9
A plugin for PathMe that allows to explore overlaps across pathway databases9 versions - Latest release: about 5 years ago - 1 dependent repositories - 22 downloads last month - 5 stars on GitHub - 1 maintainer
bio2bel-mesh 0.2.0
A package for converting MeSH to BEL1 version - Latest release: over 5 years ago - 1 dependent repositories - 17 downloads last month - 3 stars on GitHub - 1 maintainer
pybel-tools 0.9.1
A cool pool of tools for BEL41 versions - Latest release: over 3 years ago - 1 dependent repositories - 176 downloads last month - 5 stars on GitHub - 2 maintainers
Top 4.6% on pypi.org
92 versions - Latest release: over 2 years ago - 6 dependent packages - 18 dependent repositories - 2.26 thousand downloads last month - 130 stars on GitHub - 2 maintainers
pybel 0.15.5
Parsing, validation, compilation, and data exchange of Biological Expression Language (BEL)92 versions - Latest release: over 2 years ago - 6 dependent packages - 18 dependent repositories - 2.26 thousand downloads last month - 130 stars on GitHub - 2 maintainers
Top 9.9% on pypi.org
40 versions - Latest release: over 2 years ago - 1 dependent package - 5 dependent repositories - 497 downloads last month - 20 stars on GitHub - 1 maintainer
bio2bel 0.4.2
A framework for converting biological data sources to BEL40 versions - Latest release: over 2 years ago - 1 dependent package - 5 dependent repositories - 497 downloads last month - 20 stars on GitHub - 1 maintainer
bel-resources 0.0.3
Utilities for BEL resource files.3 versions - Latest release: over 4 years ago - 6 dependent repositories - 1.71 thousand downloads last month - 1 stars on GitHub - 1 maintainer
bio2bel-uniprot 0.0.2
A package for downloading, parsing, storing, and serializing UniProt2 versions - Latest release: over 5 years ago - 1 dependent repositories - 39 downloads last month - 0 stars on GitHub - 1 maintainer
bio2bel-interpro 0.2.1
A package for converting InterPro to BEL3 versions - Latest release: about 5 years ago - 1 dependent repositories - 39 downloads last month - 0 stars on GitHub - 1 maintainer
toymaker 0.2.5
This library is designed to facilitate research of stochasticity effects in genetic circuits6 versions - Latest release: 11 months ago - 27 downloads last month - 2 stars on GitHub - 1 maintainer
pybel-artifactory 0.0.2
A PyBEL extension for handling BEL resources with Artifactory3 versions - Latest release: about 6 years ago - 1 dependent repositories - 39 downloads last month - 0 stars on GitHub - 1 maintainer
pybel-jupyter 0.3.0
A PyBEL extension for Jupyter notebooks7 versions - Latest release: about 4 years ago - 1 dependent repositories - 66 downloads last month - 2 stars on GitHub - 2 maintainers
diffupy 0.0.5
Compute diffusion scores over networks5 versions - Latest release: about 4 years ago - 1 dependent repositories - 30 downloads last month - 7 stars on GitHub - 1 maintainer
drug2ways 0.0.12
Reasoning over polar paths in biological networks for drug discovery applications12 versions - Latest release: almost 2 years ago - 2 dependent repositories - 69 downloads last month - 26 stars on GitHub - 1 maintainer
pathme 0.1.13
Harmonizing pathway databases using Biological Expression Language (BEL)23 versions - Latest release: about 4 years ago - 1 dependent repositories - 105 downloads last month - 17 stars on GitHub - 1 maintainer
pybel-ols 0.0.1
A package for building BEL resource files with the EBI Ontology Lookup Service.1 version - Latest release: over 5 years ago - 1 dependent repositories - 21 downloads last month - 0 stars on GitHub - 1 maintainer
belql 0.3.0
BEL query language Python package.2 versions - Latest release: 10 months ago - 31 downloads last month - 0 stars on GitHub - 1 maintainer
compath 0.1.3
A web application for exploring and comparing the overlaps across pathway resources8 versions - Latest release: over 3 years ago - 1 dependent repositories - 69 downloads last month - 11 stars on GitHub - 2 maintainers
bio2bel-kegg 0.3.0
A package for converting KEGG gene sets into BEL22 versions - Latest release: over 3 years ago - 1 dependent repositories - 213 downloads last month - 13 stars on GitHub - 2 maintainers
dcfba 0.1.2
Python package for Dynamic Community FBA4 versions - Latest release: 7 months ago - 39 downloads last month - 0 stars on GitHub - 3 maintainers
ssbtoolkit 1.0.6
Simulation of methematical models of signaling pathways of GPCRs7 versions - Latest release: 11 months ago - 8 downloads last month - 1 maintainer
smgenerator 0.1.1
Synthetic Models of biological systems Generator9 versions - Latest release: over 2 years ago - 1 dependent repositories - 4 downloads last month - 0 stars on GitLab.com - 1 maintainer
pybel-cx 0.1.3
A PyBEL extension for interconversion with CX6 versions - Latest release: over 4 years ago - 1 dependent repositories - 21 downloads last month - 0 stars on GitHub - 1 maintainer
pathway-forte 0.0.2
A Python package for comparing the effect of pathway database choice in functional enrichment and...2 versions - Latest release: about 5 years ago - 1 dependent repositories - 7 downloads last month - 13 stars on GitHub - 1 maintainer
guiltytargets 0.0.2
A tool for ranking potential targets for a given disease1 version - Latest release: about 4 years ago - 1 dependent repositories - 15 downloads last month - 10 stars on GitHub - 1 maintainer
diffupath 0.0.3
Compute diffusion scores over networks from biological databases3 versions - Latest release: about 4 years ago - 1 dependent repositories - 23 downloads last month - 6 stars on GitHub - 1 maintainer
compath-utils 0.3.2
A utilities package for ComPath14 versions - Latest release: about 4 years ago - 165 downloads last month - 0 stars on GitHub - 2 maintainers
compath-hgnc 0.0.2
A package that wraps PyHGNC to perform mappings between different gene identifiers2 versions - Latest release: almost 6 years ago - 23 downloads last month - 0 stars on GitHub - 2 maintainers
bio2bel-wikipathways 0.2.3
A package for converting Wikipathways to BEL27 versions - Latest release: about 5 years ago - 150 downloads last month - 3 stars on GitHub - 2 maintainers
bio2bel-msig 0.2.0
A package for converting MSigDB gene sets into BEL9 versions - Latest release: almost 4 years ago - 1 dependent repositories - 30 downloads last month - 2 stars on GitHub - 2 maintainers
bio2bel-reactome 0.2.3
A wrapper around Reactome RESTful API24 versions - Latest release: over 5 years ago - 144 downloads last month - 5 stars on GitHub - 2 maintainers
bio2bel-mirtarbase 0.2.2
A package for converting miRTarBase to BEL5 versions - Latest release: about 5 years ago - 1 dependent repositories - 68 downloads last month - 0 stars on GitHub - 1 maintainer
bio2bel-hgnc 0.3.0
A package for converting HGNC to BEL20 versions - Latest release: over 4 years ago - 1 dependent repositories - 271 downloads last month - 2 stars on GitHub - 2 maintainers
bio2bel-go 0.0.1
A package for converting GO to BEL1 version - Latest release: over 5 years ago - 1 dependent repositories - 20 downloads last month - 1 stars on GitHub - 1 maintainer
bio2bel-expasy 0.2.0
A package for parsing and storing the ExPASy Enzyme Database2 versions - Latest release: over 5 years ago - 13 downloads last month - 0 stars on GitHub - 1 maintainer
bio2bel-drugbank 0.1.1
A package for converting DrugBank to BEL4 versions - Latest release: over 5 years ago - 1 dependent repositories - 43 downloads last month - 9 stars on GitHub - 1 maintainer
bio2bel-famplex 0.0.1
Downloader, parser, and BEL converter for FamPlex1 version - Latest release: over 5 years ago - 22 downloads last month - 0 stars on GitHub - 1 maintainer
bel-repository 0.1.2
A utility for loading data from repositories of BEL documents.11 versions - Latest release: about 4 years ago - 1 dependent package - 1 dependent repositories - 348 downloads last month - 1 stars on GitHub - 1 maintainer
bel-enrichment 0.0.5
A package for generating curation sheets for rationally enriching a BEL graph using INDRA and PyBEL.5 versions - Latest release: about 4 years ago - 1 dependent repositories - 81 downloads last month - 7 stars on GitHub - 1 maintainer
refinegems 1.4.2
refineGEMs: a python package intended to help with the curation of genome-scale metabolic models ...10 versions - Latest release: 5 months ago - 1 dependent repositories - 75 downloads last month - 8 stars on GitHub - 2 maintainers
Related Keywords
Networks Biology
32
Biological Expression Language
27
BEL
24
biological-expression-language
23
systems-biology
17
networks-biology
11
bioinformatics
11
pathway-analysis
7
pathways
7
terminology
7
DSL
6
Domain Specific Language
6
proteins
4
protein-families
3
Pathways
3
Pathway Databases
3
InterPro
2
Ontologies
2
Semantic Web
2
ontologies
2
pybel
2
system-biology
2
ontology
2
network-biology
2
network-analysis
2
knowledge-graph
2
diffusion-network
2
Heat Diffusion
2
networks
2
network-visualization
2
chemistry
2
Biochemical Networks
1
NDEx
1
cytoscape
1
Pathway Enrichment
1
Machine Learning
1
msig
1
gene-set-enrichment
1
wikipathways
1
WikiPathways
1
template-project
1
benchmarking
1
databases
1
machine-learning
1
Curation
1
pathway-enrichment-analysis
1
Target Prioritization
1
Network Representation Learning
1
Knowledge Graph Embeddings
1
Python Package
1
Metabolic Modelling
1
GEM
1
natural-language-processing
1
indra
1
biocuration
1
protein-complexes
1
Protein Complexes
1
Protein Families
1
pharmacology
1
drugs
1
drugbank
1
cheminformatics
1
expasy
1
ExPASy
1
gene-ontology
1
Gene Ontology
1
hgnc
1
genes
1
mirtarbase
1
mirna-target-interactions
1
Micro-RNA
1
reactome
1
Reactome
1
msigdb
1
gillespie-algorithm
1
Synthetic Biology
1
Simulation
1
Genetic circuits
1
Stochastic process
1
protein-domains
1
interpro
1
uniprot
1
terminologies
1
data-integration
1
domain-specific-language
1
bioregistry
1
phenotypes
1
mesh
1
MeSH
1
visualization
1
chemoinformatics
1
chebi
1
ChEBI
1
Differential Expression
1
Omics
1
Proteomics
1
Reaction-based Models
1
Synthetic Models
1
GPCR
1
python
1