Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "computational-chemistry" keyword

stko 0.0.40
A collection of molecular optimisers and property calculators for use with stk.
13 versions - Latest release: about 2 years ago - 2 dependent packages - 1 dependent repositories - 755 downloads last month - 19 stars on GitHub - 2 maintainers
Top 8.3% on pypi.org
smact 2.5.5
Semiconducting Materials by Analogy and Chemical Theory
22 versions - Latest release: 5 months ago - 1 dependent package - 2 dependent repositories - 1.37 thousand downloads last month - 71 stars on GitHub - 3 maintainers
faltwerk 0.2.36
Spatial analysis of protein structures
4 versions - Latest release: over 1 year ago - 59 downloads last month - 761 stars on GitHub - 1 maintainer
turbomoleio 1.5.0
Turbomoleio is a python package containing a set of tools for the generation of inputs and parsin...
8 versions - Latest release: about 2 months ago - 1 dependent package - 1 dependent repositories - 109 downloads last month - 17 stars on GitHub - 1 maintainer
mdacli 0.1.28
A command line client for MDAnalysis Analysis classes.
24 versions - Latest release: 8 months ago - 1 dependent package - 1 dependent repositories - 252 downloads last month - 17 stars on GitHub - 2 maintainers
Top 6.2% on pypi.org
stk 2024.3.28.0 💰
A Python library which allows construction and manipulation of complex molecules, as well as auto...
114 versions - Latest release: about 2 months ago - 8 dependent packages - 5 dependent repositories - 676 downloads last month - 237 stars on GitHub - 2 maintainers
solvation-analysis 0.4.0
A toolkit to analyze solvation structure in molecular dynamics trajectories.
14 versions - Latest release: 5 days ago - 1 dependent repositories - 223 downloads last month - 37 stars on GitHub - 1 maintainer
seamm-util 2024.4.30
seamm_util
36 versions - Latest release: 14 days ago - 24 dependent packages - 15 dependent repositories - 987 downloads last month - 1 stars on GitHub - 1 maintainer
Top 8.7% on pypi.org
seamm 2024.5.3
The core of the SEAMM environment and graphical interface.
83 versions - Latest release: 11 days ago - 26 dependent packages - 24 dependent repositories - 1.37 thousand downloads last month - 11 stars on GitHub - 1 maintainer
reference-handler 0.9.1
Python-centric Cookiecutter for Molecular Computational Chemistry Packages
3 versions - Latest release: about 3 years ago - 2 dependent packages - 1 dependent repositories - 368 downloads last month - 358 stars on GitHub - 1 maintainer
qc-iodata 1.0.0a2
Python Input and Output Library for Quantum Chemistry.
2 versions - Latest release: almost 3 years ago - 2 dependent packages - 255 downloads last month - 118 stars on GitHub - 1 maintainer
Top 4.3% on pypi.org
qcengine 0.29.0
A compute wrapper for Quantum Chemistry.
40 versions - Latest release: 7 months ago - 7 dependent packages - 12 dependent repositories - 1.88 thousand downloads last month - 155 stars on GitHub - 5 maintainers
Top 3.0% on pypi.org
qcelemental 0.27.1
Core data structures for Quantum Chemistry.
45 versions - Latest release: 7 months ago - 20 dependent packages - 37 dependent repositories - 6.42 thousand downloads last month - 131 stars on GitHub - 4 maintainers
Top 9.5% on pypi.org
westpa 0.0.3
WESTPA is a package for constructing and running stochastic simulations using the "weighted ensem...
12 versions - Latest release: about 4 years ago - 1 dependent package - 1 dependent repositories - 540 downloads last month - 181 stars on GitHub - 2 maintainers
Top 1.6% on pypi.org
py3dmol 2.1.0
An IPython interface for embedding 3Dmol.js views in Jupyter notebooks
29 versions - Latest release: 2 months ago - 17 dependent packages - 30 dependent repositories - 114 thousand downloads last month - 759 stars on GitHub - 1 maintainer
Top 4.4% on pypi.org
padelpy 0.1.16
A Python wrapper for PaDEL-Descriptor software
17 versions - Latest release: 6 months ago - 6 dependent packages - 13 dependent repositories - 9.83 thousand downloads last month - 160 stars on GitHub - 1 maintainer
catkit 0.5.4
General purpose tools for high-throughput catalysis.
10 versions - Latest release: over 5 years ago - 2 dependent repositories - 146 downloads last month - 77 stars on GitHub - 1 maintainer
molsystem 2024.5.8
molsystem
56 versions - Latest release: 6 days ago - 7 dependent packages - 2 dependent repositories - 1.07 thousand downloads last month - 3 stars on GitHub - 2 maintainers
Top 6.0% on pypi.org
mdanalysistests 2.7.0
MDAnalysis testsuite
45 versions - Latest release: 5 months ago - 2 dependent repositories - 1.89 thousand downloads last month - 1,229 stars on GitHub - 4 maintainers
Top 1.7% on pypi.org
mdanalysis 2.7.0
An object-oriented toolkit to analyze molecular dynamics trajectories.
49 versions - Latest release: 5 months ago - 34 dependent packages - 47 dependent repositories - 35.9 thousand downloads last month - 1,229 stars on GitHub - 4 maintainers
catlearn 0.6.2
Machine Learning using atomic-scale calculations.
25 versions - Latest release: about 4 years ago - 1 dependent repositories - 262 downloads last month - 96 stars on GitHub - 3 maintainers
mol-kit 0.0.4
This is a molecule structure file conversion library
4 versions - Latest release: over 1 year ago - 196 downloads last month - 527 stars on GitHub - 1 maintainer
scine-xtb-wrapper 3.0.0
A wrapper for xtb
5 versions - Latest release: 6 months ago - 1 dependent repositories - 73 downloads last month - 525 stars on GitHub - 1 maintainer
Top 4.4% on pypi.org
freud-analysis 3.0.0
Powerful, efficient trajectory analysis in scientific Python.
31 versions - Latest release: 3 months ago - 5 dependent packages - 13 dependent repositories - 3.84 thousand downloads last month - 258 stars on GitHub - 6 maintainers
iodata 0.1.3
Python library for reading, writing, and converting computational chemistry file formats and gene...
4 versions - Latest release: over 6 years ago - 1 dependent repositories - 51 downloads last month - 118 stars on GitHub - 1 maintainer
Top 2.2% on pypi.org
cclib 1.8.1
parsers and algorithms for computational chemistry
37 versions - Latest release: about 2 months ago - 20 dependent packages - 41 dependent repositories - 20.5 thousand downloads last month - 314 stars on GitHub - 5 maintainers
vieworca 0.1.5
This program is designed to allow the user to inspect calculations from ORCA. This is to be used ...
1 version - Latest release: 14 days ago - 161 downloads last month - 0 stars on GitHub - 1 maintainer
aiida_orca 0.7.0
AiiDA-Orca plugin
5 versions - Latest release: 12 months ago - 157 downloads last month - 7 stars on GitHub - 1 maintainer
custom-step 2023.12.12
A SEAMM plug-in for custom Python scripts in a flowchart.
12 versions - Latest release: 5 months ago - 1 dependent repositories - 201 downloads last month - 0 stars on GitHub - 1 maintainer
qmzyme 0.9.34
QM-based enzyme model generation and validation.
21 versions - Latest release: 3 months ago - 579 downloads last month - 358 stars on GitHub - 1 maintainer
deepmd-kit-cu11 2.2.10
A deep learning package for many-body potential energy representation and molecular dynamics
3 versions - Latest release: about 1 month ago - 91 downloads last month - 1,353 stars on GitHub - 2 maintainers
vaspy 0.8.12
A pure Python library designed to make it easy and quick to manipulate VASP files
19 versions - Latest release: about 5 years ago - 1 dependent repositories - 261 downloads last month - 261 stars on GitHub - 1 maintainer
qcarchivetesting 0.54.1
A distributed compute and database platform for quantum chemistry.
6 versions - Latest release: about 1 month ago - 54 downloads last month - 143 stars on GitHub - 1 maintainer
qcfractalcompute 0.54.1
A distributed compute and database platform for quantum chemistry.
6 versions - Latest release: about 1 month ago - 1 dependent package - 60 downloads last month - 143 stars on GitHub - 1 maintainer
horton-part 0.0.2
Molecular partitioning schemes used in computational chemistry
1 version - Latest release: 12 months ago - 18 downloads last month - 0 stars on GitHub - 1 maintainer
horton-grid 0.0.3
Molecular grids used in computational chemistry
3 versions - Latest release: 12 months ago - 1 dependent package - 33 downloads last month - 39 stars on GitHub - 1 maintainer
tencirchem 0.0.1
Efficient quantum computational chemistry based on TensorCircuit
4 versions - Latest release: about 1 year ago - 25 downloads last month - 52 stars on GitHub - 1 maintainer
pyqint 0.16.2
Python package for evaluating integrals of Gaussian type orbitals in electronic structure calcula...
28 versions - Latest release: 23 days ago - 1 dependent package - 1 dependent repositories - 1.18 thousand downloads last month - 21 stars on GitHub - 1 maintainer
molextract 1.0.0
Parse Molcas/OpenMolcas log files in a modular way
1 version - Latest release: over 1 year ago - 6 downloads last month - 6 stars on GitHub - 1 maintainer
polypharm 0.4.3
A Python-based library to perform IFD and MMGBSA calculations on different targets using a polyph...
10 versions - Latest release: 8 days ago - 188 downloads last month - 2 stars on GitHub - 1 maintainer
scaffoldgraphdg 1.1.8
ScaffoldGraph is an open-source cheminformatics library, built using RDKit and NetworkX for gener...
7 versions - Latest release: over 1 year ago - 87 downloads last month - 158 stars on GitHub - 1 maintainer
scaffoldgraphnew 1.1.5
ScaffoldGraph is an open-source cheminformatics library, built using RDKit and NetworkX for gener...
4 versions - Latest release: over 1 year ago - 19 downloads last month - 158 stars on GitHub - 1 maintainer
gninatorch 0.0.2
PyTorch implementation of GNINA scoring function
2 versions - Latest release: over 1 year ago - 1 dependent repositories - 23 downloads last month - 554 stars on GitHub - 1 maintainer
scine-serenity-wrapper 3.0.0
A wrapper for Serenity
4 versions - Latest release: 6 months ago - 61 downloads last month - 28 stars on GitHub - 1 maintainer
ligning 0.1.1
Accelerated Lignin Structure Generation with Graph-based Multiscale Modeling
2 versions - Latest release: almost 2 years ago - 1 dependent repositories - 19 downloads last month - 1 stars on GitHub - 1 maintainer
Top 10.0% on pypi.org
dftd4 3.6.0
Python API of the DFT-D4 project
3 versions - Latest release: 3 months ago - 3 dependent packages - 1 dependent repositories - 496 downloads last month - 140 stars on GitHub - 2 maintainers
zmats 0.1.0
Python-centric Cookiecutter for Molecular Computational Chemistry Packages
1 version - Latest release: about 4 years ago - 1 dependent repositories - 15 downloads last month - 357 stars on GitHub - 1 maintainer
zeoliteclusterizer 0.1.1
A python module built for rapid computational screening of catalysts on rigid structures
1 version - Latest release: almost 7 years ago - 1 dependent repositories - 13 downloads last month - 7 stars on GitHub - 1 maintainer
qcportal 0.54.1
A distributed compute and database platform for quantum chemistry.
33 versions - Latest release: about 1 month ago - 2 dependent packages - 1 dependent repositories - 284 downloads last month - 143 stars on GitHub - 3 maintainers
qcfractal 0.54.1
A distributed compute and database platform for quantum chemistry.
37 versions - Latest release: about 1 month ago - 1 dependent package - 1 dependent repositories - 226 downloads last month - 143 stars on GitHub - 3 maintainers
table-step 2023.11.10
A SEAMM plug-in for data tables in a flowchart.
15 versions - Latest release: 6 months ago - 1 dependent repositories - 192 downloads last month - 0 stars on GitHub - 1 maintainer
supercell-step 2023.11.5
A SEAMM plug-in for building supercells of periodic systems.
7 versions - Latest release: 6 months ago - 1 dependent repositories - 110 downloads last month - 0 stars on GitHub - 1 maintainer
soprano 0.8.13
A Python library to crack crystals
18 versions - Latest release: over 2 years ago - 2 dependent packages - 2 dependent repositories - 162 downloads last month - 7 stars on GitHub - 2 maintainers
set-cell-step 2021.10.14
A SEAMM plug-in for setting the periodic (unit) cell.
4 versions - Latest release: over 2 years ago - 1 dependent repositories - 33 downloads last month - 0 stars on GitHub - 1 maintainer
sella 2.3.3
A Python software package for saddle point optimization and minimization of atomic systems.
16 versions - Latest release: 2 months ago - 2 dependent packages - 1 dependent repositories - 1.18 thousand downloads last month - 50 stars on GitHub - 1 maintainer
scfpy 0.2
A Simple restricted Hartree-Fock code
2 versions - Latest release: almost 6 years ago - 1 dependent repositories - 16 downloads last month - 34 stars on GitHub - 1 maintainer
scaffoldgraph 1.1.2
ScaffoldGraph is an open-source cheminformatics library, built using RDKit and NetworkX for gener...
8 versions - Latest release: almost 3 years ago - 1 dependent repositories - 160 downloads last month - 158 stars on GitHub - 1 maintainer
pymolresponse 0.2.0
Molecular frequency-dependent response properties for arbitrary operators
1 version - Latest release: 3 months ago - 21 downloads last month - 8 stars on GitHub - 1 maintainer
read-structure-step 2023.11.16
A SEAMM plug-in to read common formats in computational chemistry
29 versions - Latest release: 6 months ago - 1 dependent repositories - 78 downloads last month - 0 stars on GitHub - 1 maintainer
qubekit 2.6.3
Quantum mechanical bespoke force field parameter generation
12 versions - Latest release: over 4 years ago - 1 dependent repositories - 61 downloads last month - 91 stars on GitHub - 1 maintainer
qcgrid 0.0.1 removed
Python Library for Numerical Molecular Integration.
1 version - Latest release: about 4 years ago - 1 dependent repositories - 2 downloads last month - 22 stars on GitHub - 1 maintainer
pytaser 23.6.3
TAS prediction tool
13 versions - Latest release: 11 months ago - 1 dependent repositories - 88 downloads last month - 22 stars on GitHub - 3 maintainers
pylj 1.4.1
Simple teaching tool for classical MD simulation
59 versions - Latest release: about 3 years ago - 1 dependent repositories - 459 downloads last month - 28 stars on GitHub - 1 maintainer
pycrystal 1.0.16
Utilities for ab initio modeling suite CRYSTAL
13 versions - Latest release: over 1 year ago - 1 dependent repositories - 219 downloads last month - 10 stars on GitHub - 2 maintainers
pycgtool 2.0.0
Generate coarse-grained molecular dynamics models from atomistic trajectories.
7 versions - Latest release: about 2 years ago - 1 dependent repositories - 101 downloads last month - 51 stars on GitHub - 1 maintainer
pyadaqsar 1.1.1
A cheminformatics package to perform Applicability Domain of molecular fingerprints based in simi...
6 versions - Latest release: 4 months ago - 1 dependent repositories - 71 downloads last month - 20 stars on GitHub - 1 maintainer
psi4-step 2024.3.17
A SEAMM plug-in to setup, run and analyze quantum chemistry calculations using Psi4
28 versions - Latest release: about 2 months ago - 1 dependent repositories - 164 downloads last month - 3 stars on GitHub - 1 maintainer
overreact 1.2.0
⚛️📈 Create and analyze chemical microkinetic models built from computational chemistry data
4 versions - Latest release: about 1 year ago - 1 dependent repositories - 40 downloads last month - 48 stars on GitHub - 1 maintainer
octadist 3.1.0
OctaDist: A tool for calculating distortion parameters in molecule.
10 versions - Latest release: about 2 months ago - 1 dependent repositories - 236 downloads last month - 15 stars on GitHub - 1 maintainer
molz 0.1.2
Molecular analysis tool
2 versions - Latest release: over 3 years ago - 1 dependent repositories - 22 downloads last month - 9 stars on GitHub - 1 maintainer
molpy-demo 0.1.1
Python-centric Cookiecutter for Molecular Computational Chemistry Packages
1 version - Latest release: about 4 years ago - 1 dependent repositories - 9 downloads last month - 358 stars on GitHub - 1 maintainer
molfunc 1.0.0
Fast molecular functionalisation
8 versions - Latest release: about 3 years ago - 1 dependent repositories - 97 downloads last month - 27 stars on GitHub - 1 maintainer
moleview 1.1
MoleView: view your molecule anywhere and anytime.
2 versions - Latest release: almost 3 years ago - 1 dependent repositories - 30 downloads last month - 24 stars on GitHub - 1 maintainer
mdms 1.0.4
An interface to one of the most popular Molecular Dynamics codes - Amber - which aids user in pre...
4 versions - Latest release: over 4 years ago - 1 dependent repositories - 50 downloads last month - 23 stars on GitHub - 1 maintainer
mdimechanic 0.4.1
A tool for testing and developing MDI-enabled projects.
10 versions - Latest release: 26 days ago - 1 dependent repositories - 68 downloads last month - 357 stars on GitHub - 1 maintainer
mdciao 0.0.6
mdciao: Analysis of Molecular Dynamics Simulations Using Residue Neighborhoods
10 versions - Latest release: 9 months ago - 1 dependent repositories - 79 downloads last month - 29 stars on GitHub - 1 maintainer
mdbenchmark 3.0.1
Quickly generate, start and analyze benchmarks for your molecular dynamics simulations.
13 versions - Latest release: over 3 years ago - 1 dependent repositories - 92 downloads last month - 72 stars on GitHub - 3 maintainers
loop-step 2023.11.9
A SEAMM plug-in which provides loops in flowcharts.
23 versions - Latest release: 6 months ago - 1 dependent repositories - 315 downloads last month - 1 stars on GitHub - 1 maintainer
lammps-step 2024.3.22
A SEAMM plug-in for LAMMPS, a forcefield-based molecular dynamics code.
48 versions - Latest release: about 2 months ago - 1 dependent repositories - 317 downloads last month - 2 stars on GitHub - 1 maintainer
Top 7.2% on pypi.org
kallisto 1.0.10
The Kallisto software enables the efficient calculation of atomic features that can be used withi...
9 versions - Latest release: 8 months ago - 2 dependent packages - 5 dependent repositories - 342 downloads last month - 53 stars on GitHub - 1 maintainer
idptools-parrot 1.7.5
Python-centric Cookiecutter for Molecular Computational Chemistry Packages
14 versions - Latest release: 8 months ago - 1 dependent repositories - 332 downloads last month - 358 stars on GitHub - 3 maintainers
idptools-pipit 1.2
Python-centric Cookiecutter for Molecular Computational Chemistry Packages
3 versions - Latest release: over 3 years ago - 1 dependent repositories - 18 downloads last month - 358 stars on GitHub - 1 maintainer
garleek 0.3.2
Garleek: An extra flavor to ONIOM
1 version - Latest release: over 5 years ago - 1 dependent repositories - 8 downloads last month - 10 stars on GitHub - 1 maintainer
from-smiles-step 2023.11.10
A SEAMM plug-in for creating structures from a SMILES string.
24 versions - Latest release: 6 months ago - 2 dependent repositories - 268 downloads last month - 0 stars on GitHub - 1 maintainer
exatomic 0.6.0
A unified platform for theoretical and computational chemists.
7 versions - Latest release: about 1 year ago - 2 dependent repositories - 46 downloads last month - 16 stars on GitHub - 3 maintainers
esigen 0.0.4
Generate automated reports for computational chemistry calculations
4 versions - Latest release: about 6 years ago - 1 dependent repositories - 22 downloads last month - 19 stars on GitHub - 1 maintainer
dqc 0.1.0
Differentiable Quantum Chemistry
1 version - Latest release: almost 3 years ago - 1 dependent package - 43 downloads last month - 98 stars on GitHub - 2 maintainers
Top 9.9% on pypi.org
doped 2.4.2
Python package to setup, process and analyse solid-state defect calculations with VASP
34 versions - Latest release: 1 day ago - 1 dependent package - 1 dependent repositories - 1.89 thousand downloads last month - 62 stars on GitHub - 1 maintainer
crystal-builder-step 2022.7.31
A SEAMM plug-in for creating crystals from prototypes, including Strukturbericht designations.
6 versions - Latest release: almost 2 years ago - 1 dependent repositories - 117 downloads last month - 0 stars on GitHub - 1 maintainer
chemtools 0.9.2
Python tools for quantum chemical calculations
3 versions - Latest release: over 3 years ago - 1 dependent repositories - 54 downloads last month - 17 stars on GitHub - 1 maintainer
chemsolve 1.8.3
A low-level chemistry library for solving and practicing chemistry problems.
17 versions - Latest release: about 3 years ago - 1 dependent repositories - 111 downloads last month - 2 stars on GitHub - 1 maintainer
sumo2 2.3.9
Heavy weight plotting tools for ab initio solid-state calculations
3 versions - Latest release: about 1 month ago - 233 downloads last month - 175 stars on GitHub - 1 maintainer
conphar 0.1.1
PyPharmer
2 versions - Latest release: 9 months ago - 24 downloads last month - 4 stars on GitHub - 1 maintainer
smiles-encoder 0.1.1
One-hot encoding for simple molecular-input line-entry system (SMILES) strings
2 versions - Latest release: 10 months ago - 39 downloads last month - 0 stars on GitHub - 1 maintainer
graphchem 2.1.2
Graph-based machine learning for chemical property prediction
9 versions - Latest release: 10 months ago - 1 dependent repositories - 50 downloads last month - 26 stars on GitHub - 1 maintainer
ecnet 4.1.2
Fuel property prediction using QSPR descriptors
47 versions - Latest release: 10 months ago - 1 dependent repositories - 167 downloads last month - 15 stars on GitHub - 2 maintainers
candiy-lemon 0.3.0
Mine data from the PDB in minutes
3 versions - Latest release: almost 4 years ago - 1 dependent repositories - 129 downloads last month - 51 stars on GitHub - 1 maintainer
phillpot-vasp-scripts 0.1.2
A collection of scipts to automate common VASP tasks.
3 versions - Latest release: over 3 years ago - 1 dependent repositories - 27 downloads last month - 4 stars on GitHub - 1 maintainer
Top 10.0% on pypi.org
xtb 22.1
Python API for the extended tight-binding program
1 version - Latest release: over 1 year ago - 1 dependent repositories - 2.35 thousand downloads last month - 91 stars on GitHub - 2 maintainers
adcc 0.15.17
adcc: Seamlessly connect your host program to ADC
26 versions - Latest release: 11 months ago - 1 dependent repositories - 118 downloads last month - 30 stars on GitHub - 1 maintainer
Related Keywords
python 45 chemistry 39 quantum-chemistry 29 computational-materials-science 19 molecular-dynamics 17 molssi 16 molssi-seamm 16 SEAMM 14 materials-science 14 flowchart 12 plug-in 12 cheminformatics 11 machine-learning 10 dft 10 molecular-simulation 10 cookiecutter 9 science 8 molecular-modeling 8 conda-environment 8 conda-forge 8 python-packages 8 pytest 8 molecular-sciences 8 github-actions 8 vasp 7 computational-biology 6 molecular-dynamics-simulation 6 computational-physics 6 hacktoberfest 6 pytorch 5 crystallography 5 atomistic 5 molecules 5 simulation 5 rdkit 5 materials-informatics 5 quantum 4 gaussian 4 scaffold-trees 4 scaffold-networks 4 murcko 4 computational chemistry 4 hiers 4 atomistic-simulations 4 fragments 4 tight-binding 4 quantum-chemistry-packages 4 scaffolds 4 ab-initio 4 networkx 4 deep-learning 4 database-platform 4 distributed-computing 4 pymatgen 4 ase 4 materials-design 4 trajectory-analysis 4 physics 4 computational 4 molecular-graphics 3 pyscf 3 scaffold network 3 scaffold tree 3 DFT 3 hartree-fock 3 catalysis 3 cli 3 open-science 3 molecular dynamics 3 lammps 3 drug-discovery 3 simulations 3 molecular-mechanics 3 theoretical-chemistry 3 python3 3 crystal 3 plotting 3 analysis 3 quantum chemistry 3 defects 3 visualization 3 mdanalysis 3 molecular-fingerprints 3 dft-calculations 2 quantum-chemistry-automation 2 compchem 2 dos 2 quadrature 2 rrho 2 interpolation 2 protein-structure 2 structural-biology 2 integration 2 cubature 2 point-defects 2 semiconductors 2 psi4 2 tensorflow 2 library 2 rocm 2