Ecosyste.ms: Packages

python 64 analysis 27 simulation 23 lammps 23 molecular-dynamics-simulation 19 machine-learning 18 science 18 computational-chemistry 17 molecular-simulation 16 chemistry 14 gromacs 13 molecular dynamics 13 data-analysis 9 mdanalysis 8 trajectory-analysis 8 physics 8 materials-science 8 simulations 7 clustering 7 free-energy 7 biophysics 6 molecular 6 markov-model 6 computational-biology 6 tensorflow 6 bioinformatics 6 computational-physics 6 dynamics 6 quantum-chemistry 6 neural-network 6 molecular-mechanics 5 interatomic-potentials 5 ase 5 pytorch 5 monte-carlo 5 dft 4 namd 4 LAMMPS 4 protein 4 enhanced-sampling 4 openmm 4 dimensionality-reduction 4 hmm 4 python3 4 deep-learning 4 transport 4 scientific-computing 4 biochemistry 4 tica 4 protein-structure 3 pca 3 msmbuilder 3 md 3 vasp 3 molecular-modeling 3 feature-extraction 3 hdf5 3 data-science 3 Gromacs 3 pyiron 3 visualization 3 materials-informatics 3 modeling 3 high-performance-computing 3 c 3 Molecular Dynamics 3 force-fields 3 drug-design 3 free-energy-calculations 3 coarse-grained-molecular-dynamics 3 lammps-data 3 amber 3 cepstral-analysis 2 green-kubo 2 ipi 2 heat-flux 2 monte-carlo-simulation 2 charmm 2 conductivity 2 interatomic potentials 2 jax 2 coarse-graining 2 diffusion 2 MDAnalysis 2 deepmd 2 cpp 2 cuda 2 structure 2 protein-ligand-interactions 2 hybrid-particle-field 2 structural-biology 2 lipid-protein-interactions 2 docking 2 biomolecules 2 materials 2 pdb 2 cxx 2 coarse-grained 2 force field 2 force-field 2