Ecosyste.ms: Packages

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Top 2.5% on pypi.org
Top 3.4% downloads on pypi.org
Top 0.8% dependent packages on pypi.org
Top 2.0% dependent repos on pypi.org

pypi.org : tskit

The tree sequence toolkit.

Registry - Source - Homepage - Documentation - JSON
purl: pkg:pypi/tskit
Keywords: population genetics, tree sequence, ancestral recombination graph, evolutionary tree, statistical genetics, phylogenetics, tskit, bioinformatics, genomics, python, science, tree-sequences
License: MIT
Latest release: 8 months ago
First release: over 6 years ago
Dependent packages: 16
Dependent repositories: 54
Downloads: 7,747 last month
Stars: 144 on GitHub
Forks: 68 on GitHub
Docker dependents: 0
Docker downloads: 0
Total Commits: 1686
Committers: 47
Average commits per author: 35.872
Development Distribution Score (DDS): 0.668
More commit stats: commits.ecosyste.ms
See more repository details: repos.ecosyste.ms
Last synced: 20 days ago

dismal 0.1.18b0
Demographic inference from the distribution of pairwise segregating sites
2 versions - Latest release: 25 days ago - 150 downloads last month - 2 stars on GitHub - 1 maintainer
geonomics 1.4.1
A package for landscape genomic simulation
70 versions - Latest release: about 1 month ago - 7 dependent repositories - 565 downloads last month - 9 stars on GitHub - 1 maintainer
phlash 1.0.2
Bayesian inference of population size history from recombining sequence data.
4 versions - Latest release: about 2 months ago - 29 downloads last month - 7 stars on GitHub - 1 maintainer
fwdpy11 0.22.2
Forward-time population genetic simulation in Python
106 versions - Latest release: about 2 months ago - 1 dependent repositories - 589 downloads last month - 27 stars on GitHub - 1 maintainer
lineagekit 0.0.1 removed
A python library with genealogy methods
1 version - Latest release: 3 months ago - 0 stars on GitHub - 1 maintainer
tstrait 0.1.0
Quantitative trait simulation of tree sequence data
5 versions - Latest release: 3 months ago - 1 dependent repositories - 56 downloads last month - 4 stars on GitHub - 2 maintainers
Top 2.1% on pypi.org
msprime 1.3.1
Simulate genealogical trees and genomic sequence data using population genetic models
58 versions - Latest release: 4 months ago - 16 dependent packages - 83 dependent repositories - 5.33 thousand downloads last month - 167 stars on GitHub - 2 maintainers
tsdate 0.1.7
Infer node ages from a tree sequence topology.
8 versions - Latest release: 5 months ago - 5 dependent repositories - 201 downloads last month - 18 stars on GitHub - 2 maintainers
dispersenn2 0.0.7
Neural net for estimating dispersal distance
7 versions - Latest release: 7 months ago - 50 downloads last month - 1 maintainer
tszip 0.2.3
Compression utilities for tree sequences
5 versions - Latest release: 7 months ago - 3 dependent packages - 1 dependent repositories - 785 downloads last month - 4 stars on GitHub - 2 maintainers
arg-needle-lib 1.0.2
Ancestral recombination graph (ARG) data structure and operations.
4 versions - Latest release: 8 months ago - 1 dependent package - 281 downloads last month - 2 maintainers
arg-needle 1.0.3
Ancestral recombination graph (ARG)
4 versions - Latest release: 9 months ago - 56 downloads last month - 2 maintainers
Top 6.8% on pypi.org
pyslim 1.0.4
Manipulate tree sequences produced by SLiM.
24 versions - Latest release: 10 months ago - 1 dependent package - 27 dependent repositories - 1.07 thousand downloads last month - 26 stars on GitHub - 1 maintainer
sc2ts 0.0.3
Infer a succinct tree sequence from SARS-CoV-2 sequence alignments
1 version - Latest release: about 1 year ago - 1 dependent repositories - 14 downloads last month - 1 maintainer
Top 6.0% on pypi.org
tsinfer 0.3.1
Infer tree sequences from genetic variation data.
10 versions - Latest release: about 1 year ago - 1 dependent package - 8 dependent repositories - 519 downloads last month - 52 stars on GitHub - 2 maintainers
tspop 0.0.2
Extracts population-based ancestry from simulated tree sequence datasets.
3 versions - Latest release: about 1 year ago - 616 downloads last month - 1 stars on GitHub - 1 maintainer