Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "population genetics" keyword
tsdate 0.1.7
Infer node ages from a tree sequence topology.8 versions - Latest release: 5 months ago - 5 dependent repositories - 199 downloads last month - 18 stars on GitHub - 2 maintainers
Top 2.5% on pypi.org
36 versions - Latest release: 8 months ago - 16 dependent packages - 54 dependent repositories - 4.55 thousand downloads last month - 146 stars on GitHub - 2 maintainers
tskit 0.5.6
The tree sequence toolkit.36 versions - Latest release: 8 months ago - 16 dependent packages - 54 dependent repositories - 4.55 thousand downloads last month - 146 stars on GitHub - 2 maintainers
agestrucne 0.1.31
GUI and command line program for simulating populations using simuPOP, estimating Nb and Ne using...27 versions - Latest release: almost 5 years ago - 74 downloads last month - 1 maintainer
vcf2networks 1.0.8
calculate Genotype Networks from VCF files18 versions - Latest release: over 10 years ago - 2 dependent repositories - 191 downloads last month - 1 maintainer
phylomatcher 0.3.2
A tool for parsing and extracting taxon synonyms.3 versions - Latest release: about 1 year ago - 18 downloads last month - 2 stars on GitHub - 1 maintainer
ercs 1.0.1
Coalescent simulations in continuous space2 versions - Latest release: over 11 years ago - 5 dependent repositories - 17 downloads last month - 2 stars on GitHub - 1 maintainer
haproh 0.64
Identify runs of homozygosity (hapROH) and contamination (hapCon) in low coverage ancient human D...27 versions - Latest release: about 1 year ago - 1 dependent repositories - 75 downloads last month - 11 stars on GitHub - 1 maintainer
momi 2.1.20
MOran Model for Inference9 versions - Latest release: over 1 year ago - 1 dependent package - 4 dependent repositories - 57 downloads last month - 45 stars on GitHub - 1 maintainer
ab12phylo 0.5.21b0
Integrated pipeline for ML phylogenetic inference from ABI trace and FASTA data8 versions - Latest release: almost 3 years ago - 1 dependent repositories - 80 downloads last month - 3 stars on GitHub - 1 maintainer
Top 6.0% on pypi.org
10 versions - Latest release: about 1 year ago - 1 dependent package - 8 dependent repositories - 519 downloads last month - 52 stars on GitHub - 2 maintainers
tsinfer 0.3.1
Infer tree sequences from genetic variation data.10 versions - Latest release: about 1 year ago - 1 dependent package - 8 dependent repositories - 519 downloads last month - 52 stars on GitHub - 2 maintainers
snpio 1.0.5
Reads and writes VCF, PHYLIP, and STRUCTURE files and performs data filtering on the alignment.16 versions - Latest release: 9 months ago - 1 dependent package - 139 downloads last month - 2 stars on GitHub - 1 maintainer
ttne 0.0.1a0
A python package for inference recent population size trajectories using time-series IBD data1 version - Latest release: about 2 months ago - 161 downloads last month - 0 stars on GitHub - 1 maintainer
tskit-arg-visualizer 0.0.1
Interactive visualization method for ancestral recombination graphs1 version - Latest release: 7 months ago - 35 downloads last month - 9 stars on GitHub - 1 maintainer
Top 2.1% on pypi.org
58 versions - Latest release: 4 months ago - 16 dependent packages - 83 dependent repositories - 5.33 thousand downloads last month - 167 stars on GitHub - 2 maintainers
msprime 1.3.1
Simulate genealogical trees and genomic sequence data using population genetic models58 versions - Latest release: 4 months ago - 16 dependent packages - 83 dependent repositories - 5.33 thousand downloads last month - 167 stars on GitHub - 2 maintainers
taxomatcher 0.2 removed
A tool for parsing and extracting taxon synonyms.1 version - Latest release: about 1 year ago - 69 downloads last month - 0 stars on GitHub - 1 maintainer
taxo-matcher 0.1 removed
A tool for parsing and extracting taxon synonyms.1 version - Latest release: about 1 year ago - 77 downloads last month - 0 stars on GitHub - 1 maintainer
tstrait 0.1.0
Quantitative trait simulation of tree sequence data5 versions - Latest release: 3 months ago - 1 dependent repositories - 56 downloads last month - 4 stars on GitHub - 2 maintainers
timesweeper 1.4.1
A tool for detecting positive selective sweeps using time-series genomcis data.7 versions - Latest release: 2 months ago - 33 downloads last month - 14 stars on GitHub - 1 maintainer
agestrucnb 0.1.33
GUI and command line program for simulating populations using simuPOP, estimating Nb and Ne using...2 versions - Latest release: over 4 years ago - 31 downloads last month - 1 maintainer
haplopy 0.1.3
Haplotype reconstruction from unphased diplotypes6 versions - Latest release: about 1 year ago - 1 dependent repositories - 59 downloads last month - 1 stars on GitHub - 1 maintainer
Related Keywords
tree sequence
6
phylogenetics
5
ancestral recombination graph
4
bioinformatics
4
coalescent
3
simulation
3
taxonomy
3
genetics
3
genomics
3
tskit
3
statistical genetics
3
evolutionary tree
3
statistics
2
ancient DNA
2
inference
2
AgeStructureNe
2
python
2
tree-sequences
2
simuPOP
2
LDNe
2
minor-allele-frequency
1
missing-data
1
phylip
1
plots
1
principal-component-analysis
1
input-output
1
genotypes
1
snps
1
structure-alignment
1
vcf-files
1
dating
1
demographic inference
1
visualization
1
D3.js
1
coalescent simulation
1
ms
1
msprime
1
trees
1
gwas
1
quantitative trait
1
modeling
1
args
1
deep learning
1
positive selection
1
convolutional-neural-networks
1
neural-networks
1
population-genomics
1
population-genetics
1
tsdate
1
science
1
variant
1
nucleotide variant
1
vcf
1
networks
1
genotype networks
1
continuous space
1
isolation by distance
1
evolution
1
runs of homozygosity
1
reference haplotypes
1
aDNA contamination
1
site frequency spectrum
1
maximum-likelihood
1
phylogenetic-trees
1
tsinfer
1
SNP
1
VCF
1
PHYLIP
1
STRUCTURE
1
missing data
1
filtering
1
MAF
1
biallelic
1
dna-sequence-alignment
1
file-converter
1