Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
repo1.maven.org "genomics" keyword
org.seqdoop:htsjdk 1.118
A Java API for high-throughput sequencing data (HTS) formats.1 version - Latest release: almost 10 years ago - 6 dependent packages - 10 dependent repositories - 259 stars on GitHub
org.bdgenomics.adam:adam-distribution_2.11 0.23.0
A fast, scalable genome analysis system10 versions - Latest release: over 6 years ago - 948 stars on GitHub
Top 9.3% on repo1.maven.org
8 versions - Latest release: 4 months ago - 11 dependent packages - 8 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-core-spark3_2.12 1.0.1
A fast, scalable genome analysis system8 versions - Latest release: 4 months ago - 11 dependent packages - 8 dependent repositories - 948 stars on GitHub
com.jnpersson:discount_2.12 3.0.1
Analysis and counting of genomic k-mers for Apache Spark.6 versions - Latest release: over 1 year ago - 13 stars on GitHub
it.polimi.genomics:GMQL-Server 5.0
Module for the creation of the queries2 versions - Latest release: almost 6 years ago - 4 dependent packages - 2 dependent repositories - 16 stars on GitHub
io.cvbio.coord:interval_2.13 0.0.1
A better genomic interval that is compatible with HTSJDK1 version - Latest release: over 2 years ago - 1 stars on GitHub
org.intermine:bio-source-reactome 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
io.projectglow:glow-spark2_2.12 1.1.2
An open-source toolkit for large-scale genomic analysis6 versions - Latest release: over 2 years ago - 225 stars on GitHub
Top 6.8% on repo1.maven.org
14 versions - Latest release: over 3 years ago - 25 dependent packages - 11 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-core-spark2_2.11 0.33.0
A fast, scalable genome analysis system14 versions - Latest release: over 3 years ago - 25 dependent packages - 11 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-distribution_2.10 0.23.0
A fast, scalable genome analysis system10 versions - Latest release: over 6 years ago - 1 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-distribution-spark2_2.11 0.33.0
A fast, scalable genome analysis system14 versions - Latest release: over 3 years ago - 948 stars on GitHub
org.bdgenomics.adam:adam-assembly-spark2_2.11 0.33.0
A fast, scalable genome analysis system14 versions - Latest release: over 3 years ago - 2 dependent packages - 948 stars on GitHub
Top 7.1% on repo1.maven.org
58 versions - Latest release: 2 months ago - 25 dependent packages - 116 dependent repositories - 557 stars on GitHub
org.biojava:biojava-core 7.1.1
BioJava is an open-source project dedicated to providing a Java framework for processing biologic...58 versions - Latest release: 2 months ago - 25 dependent packages - 116 dependent repositories - 557 stars on GitHub
org.biojava:biojava-phylo 4.2.12
BioJava is an open-source project dedicated to providing a Java framework for processing biologic...20 versions - Latest release: almost 6 years ago - 3 dependent packages - 6 dependent repositories - 557 stars on GitHub
org.intermine:intermine-testresources 5.1.0
InterMine core modules10 versions - Latest release: over 1 year ago - 5 dependent packages - 241 stars on GitHub
org.monarchinitiative.phenol:phenol-core 2.1.1
phenol-core contains the core functionality for representing ontologies26 versions - Latest release: 30 days ago - 5 dependent packages - 24 dependent repositories - 19 stars on GitHub
org.monarchinitiative.phenol:phenol-io 2.1.1
phenol-io contains the generic I/O functionality for ontologies26 versions - Latest release: 30 days ago - 7 dependent packages - 26 dependent repositories - 19 stars on GitHub
it.polimi.genomics:GMQL-Spark 5.0
Spark implementation of GMQL operators2 versions - Latest release: almost 6 years ago - 4 dependent packages - 2 dependent repositories - 16 stars on GitHub
Top 7.8% on repo1.maven.org
78 versions - Latest release: 5 months ago - 133 dependent packages - 208 dependent repositories - 254 stars on GitHub
com.github.samtools:htsjdk 4.1.0
A Java API for high-throughput sequencing data (HTS) formats78 versions - Latest release: 5 months ago - 133 dependent packages - 208 dependent repositories - 254 stars on GitHub
io.projectglow:glow-spark3_2.12 2.0.0
An open-source toolkit for large-scale genomic analysis8 versions - Latest release: 2 months ago - 8 dependent packages - 1 dependent repositories - 225 stars on GitHub
org.monarchinitiative.phenol:phenol-annotations 2.1.1
phenol-annotation contains the annotation functionality for ontologies21 versions - Latest release: 30 days ago - 1 dependent package - 12 dependent repositories - 19 stars on GitHub
com.jnpersson:discount_2.13 3.0.1
Analysis and counting of genomic k-mers for Apache Spark.4 versions - Latest release: over 1 year ago - 13 stars on GitHub
org.intermine:bio-source-eco 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.genomicsdb:genomicsdb 1.5.3
Java API for GenomicsDB38 versions - Latest release: about 1 month ago - 2 dependent packages - 1 dependent repositories - 77 stars on GitHub
org.monarchinitiative.phenol:phenol 2.1.1
Phenotype Ontology Library26 versions - Latest release: 30 days ago - 19 stars on GitHub
org.monarchinitiative.phenol:phenol-analysis 2.1.1
phenol-analysis implements some algorithms for working with ontology data26 versions - Latest release: 30 days ago - 1 dependent package - 3 dependent repositories - 19 stars on GitHub
org.monarchinitiative.phenol:phenol-cli 2.1.1
phenol-cli gives command line access to phenol26 versions - Latest release: 30 days ago - 1 dependent repositories - 19 stars on GitHub
com.fulcrumgenomics:fgbio_2.13 2.2.1 💰
fgbio14 versions - Latest release: 4 months ago - 1 dependent package - 262 stars on GitHub
it.polimi.genomics:Compiler 5.0
Compiler of GMQL queries2 versions - Latest release: almost 6 years ago - 2 dependent packages - 2 dependent repositories - 16 stars on GitHub
it.polimi.genomics:GMQL-Profiler 5.0
Dataset Profiling2 versions - Latest release: almost 6 years ago - 1 dependent package - 1 dependent repositories - 16 stars on GitHub
org.bdgenomics.adam:adam-assembly-spark2_2.10 0.23.0
A fast, scalable genome analysis system4 versions - Latest release: over 6 years ago - 948 stars on GitHub
org.bdgenomics.adam:adam-format 0.12.0
A fast, scalable genome analysis system5 versions - Latest release: almost 10 years ago - 1 dependent package - 2 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-cli-spark2_2.10 0.23.0
A fast, scalable genome analysis system4 versions - Latest release: over 6 years ago - 8 dependent packages - 1 dependent repositories - 948 stars on GitHub
Top 7.1% on repo1.maven.org
58 versions - Latest release: 2 months ago - 14 dependent packages - 84 dependent repositories - 519 stars on GitHub
org.biojava:biojava-structure 7.1.1
The protein structure modules of BioJava.58 versions - Latest release: 2 months ago - 14 dependent packages - 84 dependent repositories - 519 stars on GitHub
org.intermine:bio-postprocess-create-autocomplete-index 5.1.0
InterMine Post Processes modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:intermine-objectstore 5.1.0
InterMine core modules10 versions - Latest release: over 1 year ago - 9 dependent packages - 241 stars on GitHub
org.intermine:bio-postprocess-make-spanning-locations 5.1.0
InterMine Post Processes modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-malaria-gff 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-postprocess-create-intron-features 5.1.0
InterMine Post Processes modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:intermine-resources 5.1.0
InterMine core modules10 versions - Latest release: over 1 year ago - 70 dependent packages - 241 stars on GitHub
org.disq-bio:disq 0.3.8
A library for manipulating bioinformatics sequencing formats in Apache Spark.11 versions - Latest release: about 3 years ago - 6 dependent packages - 2 dependent repositories - 30 stars on GitHub
org.intermine:intermine-webtasks 5.1.0
InterMine core modules10 versions - Latest release: over 1 year ago - 5 dependent packages - 241 stars on GitHub
org.intermine:bio-source-do 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:intermine-jbrowse-endpoint 5.1.0
InterMine core modules10 versions - Latest release: over 1 year ago - 1 dependent package - 241 stars on GitHub
org.intermine:bio-source-fasta 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-isa 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
com.github.samtools:htsjdk_2.11 1.128
htsjdk1 version - Latest release: over 9 years ago - 254 stars on GitHub
org.intermine:bio-source-orthodb 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-homologene 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-mammalian-phenotype-ontology 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-go-annotation 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-intermine-items-xml-file 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-uniprot 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-uniprot-keywords 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-interpro 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-treefam 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
it.polimi.genomics:gmql 5.0
Polimi GMQL, Big Data processing for Genomics2 versions - Latest release: almost 6 years ago - 16 stars on GitHub
org.intermine:bio-postprocess-create-chromosome-locations-and-lengths 5.1.0
InterMine Post Processes modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-core 5.1.0
InterMine bio modules10 versions - Latest release: over 1 year ago - 62 dependent packages - 241 stars on GitHub
org.intermine:bio-source-hgnc 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.bdgenomics.adam:adam-codegen_2.10 0.23.0
A fast, scalable genome analysis system1 version - Latest release: over 6 years ago - 2 dependent packages - 1 dependent repositories - 948 stars on GitHub
it.polimi.genomics:GMQL-Cli 5.0
Command line interface1 version - Latest release: almost 6 years ago - 16 stars on GitHub
com.lifeomic:spark-vcf 0.3.3
Spark datasource for vcf files6 versions - Latest release: over 4 years ago - 15 stars on GitHub
org.biojava:biojava-structure-gui 7.1.1
BioJava is an open-source project dedicated to providing a Java framework for processing biologic...58 versions - Latest release: 2 months ago - 36 dependent repositories - 557 stars on GitHub
org.biojava:biojava-genome 7.1.1
BioJava is an open-source project dedicated to providing a Java framework for processing biologic...58 versions - Latest release: 2 months ago - 4 dependent packages - 15 dependent repositories - 557 stars on GitHub
Top 8.0% on repo1.maven.org
58 versions - Latest release: 2 months ago - 10 dependent packages - 58 dependent repositories - 557 stars on GitHub
org.biojava:biojava-alignment 7.1.1
BioJava is an open-source project dedicated to providing a Java framework for processing biologic...58 versions - Latest release: 2 months ago - 10 dependent packages - 58 dependent repositories - 557 stars on GitHub
io.projectglow:glow_2.11 0.5.0
An open-source toolkit for large-scale genomic analysis8 versions - Latest release: almost 4 years ago - 1 dependent package - 225 stars on GitHub
io.projectglow:glow-spark2_2.11 1.1.2
An open-source toolkit for large-scale genomic analysis6 versions - Latest release: over 2 years ago - 1 dependent package - 225 stars on GitHub
org.bdgenomics.adam:adam-assembly_2.11 0.23.0
A fast, scalable genome analysis system4 versions - Latest release: over 6 years ago - 948 stars on GitHub
org.intermine:bio-source-update-data-sources 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.biojava:biojava-protein-comparison-tool 7.1.1
BioJava is an open-source project dedicated to providing a Java framework for processing biologic...12 versions - Latest release: 2 months ago - 557 stars on GitHub
org.biojava:biojava-integrationtest 7.1.1
A module which only has the purpose to run slow running integration tests. They can be executed b...58 versions - Latest release: 2 months ago - 523 stars on GitHub
org.biojava:biojava 7.1.1
BioJava is an open-source project dedicated to providing a Java framework for processing biologic...58 versions - Latest release: 2 months ago - 1 dependent package - 10 dependent repositories - 557 stars on GitHub
org.biojava:biojava-protein-disorder 7.1.1
This module is for predicting disordered regions in protein sequences58 versions - Latest release: 2 months ago - 1 dependent repositories - 523 stars on GitHub
org.biojava:biojava-sequencing 4.2.12
BioJava is an open-source project dedicated to providing a Java framework for processing biologic...29 versions - Latest release: almost 6 years ago - 3 dependent repositories - 557 stars on GitHub
org.biojava:biojava-survival 7.1.1
BioJava is an open-source project dedicated to providing a Java framework for processing biologic...58 versions - Latest release: 2 months ago - 557 stars on GitHub
org.biojava:biojava-ws 7.1.1
This module deals with bioinformatics web services that could be used to process Biojava objects ...58 versions - Latest release: 2 months ago - 9 dependent repositories - 523 stars on GitHub
org.biojava:biojava-modfinder 7.1.1
BioJava is an open-source project dedicated to providing a Java framework for processing biologic...58 versions - Latest release: 2 months ago - 1 dependent package - 2 dependent repositories - 557 stars on GitHub
org.biojava:biojava-aa-prop 7.1.1
BioJava is an open-source project dedicated to providing a Java framework for processing biologic...58 versions - Latest release: 2 months ago - 3 dependent repositories - 557 stars on GitHub
Top 8.9% on repo1.maven.org
58 versions - Latest release: 2 months ago - 6 dependent packages - 14 dependent repositories - 557 stars on GitHub
org.biojava:biojava-ontology 7.1.1
BioJava is an open-source project dedicated to providing a Java framework for processing biologic...58 versions - Latest release: 2 months ago - 6 dependent packages - 14 dependent repositories - 557 stars on GitHub
org.broadinstitute:gatk-test-utils 4.5.0.0
Development on GATK 429 versions - Latest release: 5 months ago - 1,396 stars on GitHub
org.broadinstitute:gatk 4.5.0.0
Development on GATK 448 versions - Latest release: 5 months ago - 2 dependent packages - 3 dependent repositories - 1,396 stars on GitHub
io.projectglow:glow_2.12 0.5.0
An open-source toolkit for large-scale genomic analysis4 versions - Latest release: almost 4 years ago - 1 dependent repositories - 225 stars on GitHub
it.polimi.genomics:GMQL-Repository 5.0
Module for the management of the GMQL datasets2 versions - Latest release: almost 6 years ago - 1 dependent package - 3 dependent repositories - 16 stars on GitHub
Top 9.5% on repo1.maven.org
10 versions - Latest release: over 6 years ago - 11 dependent packages - 7 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-cli_2.10 0.23.0
A fast, scalable genome analysis system10 versions - Latest release: over 6 years ago - 11 dependent packages - 7 dependent repositories - 948 stars on GitHub
org.intermine:bio-source-psi-complexes 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-mgi-identifiers 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-postprocess-populate-child-features 5.1.0
InterMine Post Processes modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:plugin 5.1.0
InterMine Plugin10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-so 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-vcf 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.bdgenomics.adam:adam-codegen-spark2_2.10 0.23.0
A fast, scalable genome analysis system1 version - Latest release: over 6 years ago - 2 dependent packages - 948 stars on GitHub
org.intermine:bio-source-kegg-orthologues 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-tools 5.1.0
InterMine bio modules10 versions - Latest release: over 1 year ago - 1 dependent package - 241 stars on GitHub
org.intermine:bio-source-ncbi-gene 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-postprocess-create-search-index 5.1.0
InterMine Post Processes modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-postprocess-create-R2RML-mapping 5.1.0
InterMine Post Processes modules1 version - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:intermine-api 5.1.0
InterMine core modules10 versions - Latest release: over 1 year ago - 5 dependent packages - 241 stars on GitHub
org.intermine:intermine-pathquery 5.1.0
InterMine core modules10 versions - Latest release: over 1 year ago - 2 dependent packages - 241 stars on GitHub
org.intermine:bio-postprocess-create-attribute-indexes 5.1.0
InterMine Post Processes modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
Related Keywords
bioinformatics
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java
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python
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tomcat8
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webservices
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tomcat
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postgresql
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perl
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opensource
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open-source
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lgplv3
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genetics
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data-warehouse
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data-visualization
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data-visualisation
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clojurescript
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clojure
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biology
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api
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scala
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spark
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r
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parquet
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big-data
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avro
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parser-library
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pdb
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protein-data-bank
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protein-modification
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protein-sequences
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protein-structure
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sequence-alignment
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structural-bioinformatics
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structure-alignment
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bigdata
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gmql-script
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genomic-tertiary-analysis
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genometric-query-language
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gdm-dataset-architecture
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gdm
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engine-configurations
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engine
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dataset
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data-management-engine
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architecture
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ngs
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machine-learning
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phenotypes
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phenomics
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ontologies
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population-genetics
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regression
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sequencing
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vcf
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approximate-string-matching
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genome
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