Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
repo1.maven.org "genomics" keyword
Top 7.8% on repo1.maven.org
78 versions - Latest release: 5 months ago - 133 dependent packages - 208 dependent repositories - 254 stars on GitHub
com.github.samtools:htsjdk 4.1.0
A Java API for high-throughput sequencing data (HTS) formats78 versions - Latest release: 5 months ago - 133 dependent packages - 208 dependent repositories - 254 stars on GitHub
org.biojava:biojava-genome 7.1.1
BioJava is an open-source project dedicated to providing a Java framework for processing biologic...58 versions - Latest release: 3 months ago - 4 dependent packages - 15 dependent repositories - 557 stars on GitHub
Top 8.0% on repo1.maven.org
58 versions - Latest release: 3 months ago - 10 dependent packages - 58 dependent repositories - 557 stars on GitHub
org.biojava:biojava-alignment 7.1.1
BioJava is an open-source project dedicated to providing a Java framework for processing biologic...58 versions - Latest release: 3 months ago - 10 dependent packages - 58 dependent repositories - 557 stars on GitHub
org.biojava:biojava-aa-prop 7.1.1
BioJava is an open-source project dedicated to providing a Java framework for processing biologic...58 versions - Latest release: 3 months ago - 3 dependent repositories - 557 stars on GitHub
org.biojava:biojava-modfinder 7.1.1
BioJava is an open-source project dedicated to providing a Java framework for processing biologic...58 versions - Latest release: 3 months ago - 1 dependent package - 2 dependent repositories - 557 stars on GitHub
org.biojava:biojava-structure-gui 7.1.1
BioJava is an open-source project dedicated to providing a Java framework for processing biologic...58 versions - Latest release: 3 months ago - 36 dependent repositories - 557 stars on GitHub
Top 7.1% on repo1.maven.org
58 versions - Latest release: 3 months ago - 25 dependent packages - 116 dependent repositories - 557 stars on GitHub
org.biojava:biojava-core 7.1.1
BioJava is an open-source project dedicated to providing a Java framework for processing biologic...58 versions - Latest release: 3 months ago - 25 dependent packages - 116 dependent repositories - 557 stars on GitHub
Top 7.1% on repo1.maven.org
58 versions - Latest release: 3 months ago - 14 dependent packages - 84 dependent repositories - 519 stars on GitHub
org.biojava:biojava-structure 7.1.1
The protein structure modules of BioJava.58 versions - Latest release: 3 months ago - 14 dependent packages - 84 dependent repositories - 519 stars on GitHub
org.biojava:biojava-survival 7.1.1
BioJava is an open-source project dedicated to providing a Java framework for processing biologic...58 versions - Latest release: 3 months ago - 557 stars on GitHub
org.biojava:biojava-protein-disorder 7.1.1
This module is for predicting disordered regions in protein sequences58 versions - Latest release: 3 months ago - 1 dependent repositories - 523 stars on GitHub
Top 8.9% on repo1.maven.org
58 versions - Latest release: 3 months ago - 6 dependent packages - 14 dependent repositories - 557 stars on GitHub
org.biojava:biojava-ontology 7.1.1
BioJava is an open-source project dedicated to providing a Java framework for processing biologic...58 versions - Latest release: 3 months ago - 6 dependent packages - 14 dependent repositories - 557 stars on GitHub
org.biojava:biojava 7.1.1
BioJava is an open-source project dedicated to providing a Java framework for processing biologic...58 versions - Latest release: 3 months ago - 1 dependent package - 10 dependent repositories - 557 stars on GitHub
org.biojava:biojava-integrationtest 7.1.1
A module which only has the purpose to run slow running integration tests. They can be executed b...58 versions - Latest release: 3 months ago - 523 stars on GitHub
org.biojava:biojava-ws 7.1.1
This module deals with bioinformatics web services that could be used to process Biojava objects ...58 versions - Latest release: 3 months ago - 9 dependent repositories - 523 stars on GitHub
org.broadinstitute:gatk 4.5.0.0
Development on GATK 448 versions - Latest release: 5 months ago - 2 dependent packages - 3 dependent repositories - 1,396 stars on GitHub
org.genomicsdb:genomicsdb 1.5.3
Java API for GenomicsDB38 versions - Latest release: about 1 month ago - 2 dependent packages - 1 dependent repositories - 77 stars on GitHub
org.broadinstitute:gatk-test-utils 4.5.0.0
Development on GATK 429 versions - Latest release: 5 months ago - 1,396 stars on GitHub
org.biojava:biojava-sequencing 4.2.12
BioJava is an open-source project dedicated to providing a Java framework for processing biologic...29 versions - Latest release: almost 6 years ago - 3 dependent repositories - 557 stars on GitHub
org.monarchinitiative.phenol:phenol-core 2.1.1
phenol-core contains the core functionality for representing ontologies26 versions - Latest release: about 1 month ago - 5 dependent packages - 24 dependent repositories - 19 stars on GitHub
org.monarchinitiative.phenol:phenol-io 2.1.1
phenol-io contains the generic I/O functionality for ontologies26 versions - Latest release: about 1 month ago - 7 dependent packages - 26 dependent repositories - 19 stars on GitHub
org.monarchinitiative.phenol:phenol-cli 2.1.1
phenol-cli gives command line access to phenol26 versions - Latest release: about 1 month ago - 1 dependent repositories - 19 stars on GitHub
org.monarchinitiative.phenol:phenol 2.1.1
Phenotype Ontology Library26 versions - Latest release: about 1 month ago - 19 stars on GitHub
org.monarchinitiative.phenol:phenol-analysis 2.1.1
phenol-analysis implements some algorithms for working with ontology data26 versions - Latest release: about 1 month ago - 1 dependent package - 3 dependent repositories - 19 stars on GitHub
org.monarchinitiative.phenol:phenol-annotations 2.1.1
phenol-annotation contains the annotation functionality for ontologies21 versions - Latest release: about 1 month ago - 1 dependent package - 12 dependent repositories - 19 stars on GitHub
org.biojava:biojava-phylo 4.2.12
BioJava is an open-source project dedicated to providing a Java framework for processing biologic...20 versions - Latest release: almost 6 years ago - 3 dependent packages - 6 dependent repositories - 557 stars on GitHub
com.fulcrumgenomics:fgbio_2.12 1.3.1 💰
fgbio16 versions - Latest release: about 1 year ago - 262 stars on GitHub
com.fulcrumgenomics:fgbio_2.11 0.8.1 💰
fgbio14 versions - Latest release: about 5 years ago - 262 stars on GitHub
org.bdgenomics.adam:adam-assembly-spark2_2.11 0.33.0
A fast, scalable genome analysis system14 versions - Latest release: over 3 years ago - 2 dependent packages - 948 stars on GitHub
org.bdgenomics.adam:adam-apis-spark2_2.11 0.33.0
A fast, scalable genome analysis system14 versions - Latest release: over 3 years ago - 7 dependent packages - 2 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-parent-spark2_2.11 0.33.0
A fast, scalable genome analysis system14 versions - Latest release: over 3 years ago - 948 stars on GitHub
com.fulcrumgenomics:fgbio_2.13 2.2.1 💰
fgbio14 versions - Latest release: 5 months ago - 1 dependent package - 262 stars on GitHub
org.bdgenomics.adam:adam-cli-spark2_2.11 0.33.0
A fast, scalable genome analysis system14 versions - Latest release: over 3 years ago - 13 dependent packages - 3 dependent repositories - 948 stars on GitHub
Top 6.8% on repo1.maven.org
14 versions - Latest release: over 3 years ago - 25 dependent packages - 11 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-core-spark2_2.11 0.33.0
A fast, scalable genome analysis system14 versions - Latest release: over 3 years ago - 25 dependent packages - 11 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-distribution-spark2_2.11 0.33.0
A fast, scalable genome analysis system14 versions - Latest release: over 3 years ago - 948 stars on GitHub
org.arvados:arvados-java-sdk 2.7.2
Arvados Java SDK13 versions - Latest release: about 1 month ago - 338 stars on GitHub
org.biojava:biojava-protein-comparison-tool 7.1.1
BioJava is an open-source project dedicated to providing a Java framework for processing biologic...12 versions - Latest release: 3 months ago - 557 stars on GitHub
org.disq-bio:disq 0.3.8
A library for manipulating bioinformatics sequencing formats in Apache Spark.11 versions - Latest release: about 3 years ago - 6 dependent packages - 2 dependent repositories - 30 stars on GitHub
org.bdgenomics.adam:adam-codegen-spark2_2.11 0.33.0
A fast, scalable genome analysis system11 versions - Latest release: over 3 years ago - 2 dependent packages - 2 dependent repositories - 948 stars on GitHub
org.intermine:bio-postprocess-create-location-overlap-index 5.1.0
InterMine Post Processes modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.bdgenomics.adam:adam-distribution_2.11 0.23.0
A fast, scalable genome analysis system10 versions - Latest release: over 6 years ago - 948 stars on GitHub
org.intermine:bio-source-reactome 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.bdgenomics.adam:adam-distribution_2.10 0.23.0
A fast, scalable genome analysis system10 versions - Latest release: over 6 years ago - 1 dependent repositories - 948 stars on GitHub
org.intermine:intermine-testresources 5.1.0
InterMine core modules10 versions - Latest release: over 1 year ago - 5 dependent packages - 241 stars on GitHub
org.intermine:bio-source-eco 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-postprocess-create-autocomplete-index 5.1.0
InterMine Post Processes modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:intermine-objectstore 5.1.0
InterMine core modules10 versions - Latest release: over 1 year ago - 9 dependent packages - 241 stars on GitHub
org.intermine:bio-postprocess-make-spanning-locations 5.1.0
InterMine Post Processes modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-malaria-gff 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-postprocess-create-intron-features 5.1.0
InterMine Post Processes modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:intermine-resources 5.1.0
InterMine core modules10 versions - Latest release: over 1 year ago - 70 dependent packages - 241 stars on GitHub
org.intermine:intermine-webtasks 5.1.0
InterMine core modules10 versions - Latest release: over 1 year ago - 5 dependent packages - 241 stars on GitHub
org.intermine:bio-source-do 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:intermine-jbrowse-endpoint 5.1.0
InterMine core modules10 versions - Latest release: over 1 year ago - 1 dependent package - 241 stars on GitHub
org.intermine:bio-source-fasta 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-isa 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-orthodb 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-homologene 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-mammalian-phenotype-ontology 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-go-annotation 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-intermine-items-xml-file 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-uniprot 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-uniprot-keywords 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-interpro 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-treefam 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-postprocess-create-chromosome-locations-and-lengths 5.1.0
InterMine Post Processes modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-core 5.1.0
InterMine bio modules10 versions - Latest release: over 1 year ago - 62 dependent packages - 241 stars on GitHub
org.intermine:bio-source-hgnc 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-update-data-sources 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
Top 9.5% on repo1.maven.org
10 versions - Latest release: over 6 years ago - 11 dependent packages - 7 dependent repositories - 948 stars on GitHub
org.bdgenomics.adam:adam-cli_2.10 0.23.0
A fast, scalable genome analysis system10 versions - Latest release: over 6 years ago - 11 dependent packages - 7 dependent repositories - 948 stars on GitHub
org.intermine:bio-source-psi-complexes 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-mgi-identifiers 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-postprocess-populate-child-features 5.1.0
InterMine Post Processes modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:plugin 5.1.0
InterMine Plugin10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-so 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-vcf 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-kegg-orthologues 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-tools 5.1.0
InterMine bio modules10 versions - Latest release: over 1 year ago - 1 dependent package - 241 stars on GitHub
org.intermine:bio-source-ncbi-gene 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-postprocess-create-search-index 5.1.0
InterMine Post Processes modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:intermine-api 5.1.0
InterMine core modules10 versions - Latest release: over 1 year ago - 5 dependent packages - 241 stars on GitHub
org.intermine:intermine-pathquery 5.1.0
InterMine core modules10 versions - Latest release: over 1 year ago - 2 dependent packages - 241 stars on GitHub
org.intermine:bio-postprocess-create-attribute-indexes 5.1.0
InterMine Post Processes modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-psi-mi-ontology 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-model 5.1.0
InterMine bio modules10 versions - Latest release: over 1 year ago - 50 dependent packages - 241 stars on GitHub
org.intermine:intermine-webapp 5.1.0
InterMine core modules10 versions - Latest release: over 1 year ago - 4 dependent packages - 241 stars on GitHub
org.intermine:bio-source-ncbi-gff 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-postprocess-summarise-objectstore 5.1.0
InterMine Post Processes modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-wormbase-identifiers 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-chado-db 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-interpro-go 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-obo 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-webapp 5.1.0
InterMine bio modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-postprocess-create-overlap-view 5.1.0
InterMine Post Processes modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-protein2ipr 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-postprocess-create-utr-references 5.1.0
InterMine Post Processes modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:intermine-integrate 5.1.0
InterMine core modules10 versions - Latest release: over 1 year ago - 63 dependent packages - 241 stars on GitHub
org.intermine:bio-source-panther 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-testresources 5.1.0
InterMine bio modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-pubmed-gene 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
org.intermine:bio-source-go 5.1.0
InterMine bio sources modules10 versions - Latest release: over 1 year ago - 241 stars on GitHub
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bioinformatics
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java
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python
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webservices
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tomcat
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opensource
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open-source
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api
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data-visualisation
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data-visualization
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data-warehouse
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genetics
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scala
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spark
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avro
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big-data
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parquet
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parser-library
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pdb
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protein-modification
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protein-sequences
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protein-structure
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sequence-alignment
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structure-alignment
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bigdata
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engine-configurations
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engine
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sequencing
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