Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
crates.io "fastq" keyword
nohuman 0.1.0
Remove human reads from a sequencing run1 version - Latest release: 6 months ago - 364 downloads total - 8 stars on GitHub - 1 maintainer
minimap2 0.1.17+minimap2.2.27
Bindings to libminimap214 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 8.48 thousand downloads total - 51 stars on GitHub - 1 maintainer
seqsizzle 0.1.4
A pager for viewing FASTQ files with fuzzy matching, allowing different adaptors to be colored di...1 version - Latest release: 3 months ago - 431 downloads total - 7 stars on GitHub - 1 maintainer
seqsplitter 0.1.4
Parses fasta records based on list of either header names or regexes5 versions - Latest release: over 1 year ago - 1.75 thousand downloads total - 0 stars on GitHub - 1 maintainer
minimap2-sys 0.1.18+minimap2.2.27
Bindings to libminimap218 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 9.75 thousand downloads total - 51 stars on GitHub - 1 maintainer
rasusa 2.0.0
Randomly subsample reads or alignments13 versions - Latest release: about 1 month ago - 5.28 thousand downloads total - 186 stars on GitHub - 1 maintainer
Top 9.9% on crates.io
8 versions - Latest release: almost 6 years ago - 5 dependent packages - 6 dependent repositories - 67.4 thousand downloads total - 40 stars on GitHub - 1 maintainer
fastq 0.6.0
A parser for fastq8 versions - Latest release: almost 6 years ago - 5 dependent packages - 6 dependent repositories - 67.4 thousand downloads total - 40 stars on GitHub - 1 maintainer
bio-jtools 0.2.0
A suite of bioinformatics tools for interacting with high throughput sequencing (HTS) data13 versions - Latest release: over 1 year ago - 5.71 thousand downloads total - 3 stars on GitHub - 1 maintainer
kseq 0.5.3
a simple fasta/fastq format parser library21 versions - Latest release: 3 months ago - 2 dependent repositories - 8.23 thousand downloads total - 19 stars on GitHub - 1 maintainer
fqgrep 1.0.2 💰
Search a pair of fastq files for reads that match a given ref or alt sequence2 versions - Latest release: over 1 year ago - 902 downloads total - 88 stars on GitHub - 1 maintainer
fqkit 0.4.5
fqkit: a simple and cross-platform program for fastq file manipulation45 versions - Latest release: 26 days ago - 13.3 thousand downloads total - 0 stars on GitHub - 1 maintainer
fxtools 0.2.32
A collection of commandline Fasta/Fastq utility tools32 versions - Latest release: about 1 month ago - 9.12 thousand downloads total - 2 stars on GitHub - 1 maintainer
fastqc-rs 0.3.2
A fast quality control tool for FASTQ files written in rust8 versions - Latest release: about 2 years ago - 3.59 thousand downloads total - 31 stars on GitHub - 1 maintainer
fastx 0.2.1
FastX reads Fasta and FastQ files with little overhead.4 versions - Latest release: 5 months ago - 1 dependent package - 1.7 thousand downloads total - 2 stars on GitHub - 1 maintainer
bamsalvage 0.1.3
Rust version of bamsalvage, retrieving sequences from a corrupted BAM file as much as possible.1 version - Latest release: about 1 year ago - 355 downloads total - 1 stars on GitHub - 1 maintainer
ross 0.1.7
A set of scripts to run basic analysis on fastq files2 versions - Latest release: about 6 years ago - 1.35 thousand downloads total - 75 stars on GitHub - 1 maintainer
fasten 0.8.3
A set of scripts to run basic analysis on fastq files10 versions - Latest release: 4 months ago - 4.55 thousand downloads total - 74 stars on GitHub - 1 maintainer
fffx 0.1.3
Another fasta/q/x file format parser. Well fuzzed.4 versions - Latest release: 11 months ago - 2 dependent packages - 1 dependent repositories - 5.63 thousand downloads total - 0 stars on GitHub - 1 maintainer
seqsample 0.2.0
Randomly sample sequences from a FASTA file2 versions - Latest release: about 1 year ago - 711 downloads total - 0 stars on GitHub - 1 maintainer
kractor 0.4.0
Extract reads from a FASTQ file based on taxonomic classification via Kraken2.1 version - Latest release: 8 months ago - 332 downloads total - 1 stars on GitHub - 1 maintainer
krakenxtract 0.4.0
Extract reads from a FASTQ file based on taxonomic classification via Kraken2.4 versions - Latest release: 8 months ago - 1.1 thousand downloads total - 1 stars on GitHub - 1 maintainer
lrdf 0.2.0
Commandline tool to generate a dataframe from Oxford Nanopore FastQ1 version - Latest release: over 1 year ago - 369 downloads total - 0 stars on GitHub - 1 maintainer
bio-streams 0.3.1
Streaming bioinformatics data types2 versions - Latest release: 25 days ago - 184 downloads total - 5 stars on GitHub - 1 maintainer
ontime 0.3.1
Extract subsets of ONT (Nanopore) reads based on time7 versions - Latest release: 4 months ago - 1.99 thousand downloads total - 16 stars on GitHub - 1 maintainer
Top 8.9% on crates.io
12 versions - Latest release: 10 months ago - 23 dependent packages - 16 dependent repositories - 29.7 thousand downloads total - 67 stars on GitHub - 1 maintainer
seq_io 0.3.2
Fast FASTA and FASTQ readers12 versions - Latest release: 10 months ago - 23 dependent packages - 16 dependent repositories - 29.7 thousand downloads total - 67 stars on GitHub - 1 maintainer
Top 7.8% on crates.io
15 versions - Latest release: about 1 year ago - 40 dependent packages - 24 dependent repositories - 181 thousand downloads total - 126 stars on GitHub - 4 maintainers
needletail 0.5.1
FASTX parsing and k-mer methods15 versions - Latest release: about 1 year ago - 40 dependent packages - 24 dependent repositories - 181 thousand downloads total - 126 stars on GitHub - 4 maintainers
seqcomplexity 0.1.2
Calculates per-read and total sequence complexity from FastQ file.3 versions - Latest release: almost 2 years ago - 960 downloads total - 0 stars on GitHub - 1 maintainer
seqdupes 0.1.0
Compress sequence duplicates1 version - Latest release: over 1 year ago - 355 downloads total - 0 stars on GitHub - 1 maintainer
syncmers 0.1.5
Rust library for finding syncmers5 versions - Latest release: over 1 year ago - 1 dependent package - 2.16 thousand downloads total - 5 stars on GitHub - 1 maintainer
fastq-count 0.1.0
Simple fastq read and base counter for paired data.1 version - Latest release: about 5 years ago - 706 downloads total - 3 stars on GitHub - 1 maintainer
phcue-ck 0.2.0
phcue-ck is a command line tool to obtain FTP links to FASTQ files from ENA using run accession4 versions - Latest release: almost 2 years ago - 1.19 thousand downloads total - 1 stars on GitHub - 1 maintainer
fastleng 0.2.0
fastleng - read length statistics tool3 versions - Latest release: about 1 year ago - 1.08 thousand downloads total - 2 stars on GitHub - 1 maintainer
bio-rust 0.1.1
解析生物信息领域的基本数据结构，提供操纵这些数据的接口和构建一些统计模型。1 version - Latest release: almost 2 years ago - 388 downloads total - 0 stars on GitHub - 1 maintainer
illumina_coordinates 0.9.1
Parses Illumina sequence identifiers found in FASTQ files2 versions - Latest release: almost 6 years ago - 1.35 thousand downloads total - 0 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
22
fasta
16
rust
9
genomics
6
bio
4
metagenomics
3
alignment
3
parser
3
sequencing
3
hts
2
nanopore
2
cli
2
taxonomy
2
kraken
2
bam
2
fastx
2
fastq-files
2
spliced-alignment
2
sequence-alignment
2
minimap2
2
longread
2
ffi
2
streaming
1
compression
1
dataframe
1
friends
1
bamsalvage
1
commandline
1
long-read
1
genome
1
tsv
1
time
1
bioinfomatics
1
filter
1
subset
1
kmer
1
sequence
1
syncmers
1
ngs
1
long-read-sequencing
1
next-generation-sequencing
1
quality-metrics
1
champ
1
illumina
1
contamination
1
contamination-removal
1
human-contamination
1
human-read-removal
1
pager
1
visualization
1
genomic-sequencing
1
coverage
1
subsampling
1
downsample
1
genome-analysis
1
random
1
command-line
1
genome-sequencing
1
rust-lang
1
reads
1
barcode
1
command-line-tool
1
demux
1
gc-content
1
trim-fq
1
toolkit
1
fastqc
1
k-mer-counting
1
sequence-quality
1
sequence-statistics
1