Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
crates.io "fasta" keyword
fakit 0.3.3
fakit: a simple program for fasta file manipulation21 versions - Latest release: 2 months ago - 6.26 thousand downloads total - 0 stars on GitHub - 1 maintainer
rasusa 2.0.0
Randomly subsample reads or alignments13 versions - Latest release: about 1 month ago - 5.28 thousand downloads total - 186 stars on GitHub - 1 maintainer
to-trans 0.2.0
A high-performance transcriptome builder from fasta + GTF/GFF2 versions - Latest release: 5 months ago - 670 downloads total - 2 stars on GitHub - 1 maintainer
rust-gc-count 0.1.0
GC and sequence utilities1 version - Latest release: 10 months ago - 399 downloads total - 2 stars on GitHub - 1 maintainer
sfasta 0.3.5
Better FASTA sequence compression and querying6 versions - Latest release: over 1 year ago - 1.96 thousand downloads total - 27 stars on GitHub - 1 maintainer
libsfasta 0.3.4
Better FASTA sequence compression and querying2 versions - Latest release: over 1 year ago - 1 dependent package - 1.07 thousand downloads total - 27 stars on GitHub - 1 maintainer
kseq 0.5.3
a simple fasta/fastq format parser library21 versions - Latest release: 3 months ago - 2 dependent repositories - 8.23 thousand downloads total - 19 stars on GitHub - 1 maintainer
jean_io 0.1.0
I/O library feature for jean1 version - Latest release: over 1 year ago - 2 dependent packages - 1 dependent repositories - 911 downloads total - 1 stars on GitHub - 1 maintainer
faiquery 0.1.3
Queryable indexed fasta using a mmapped file4 versions - Latest release: 10 months ago - 2 dependent packages - 1 dependent repositories - 1.85 thousand downloads total - 0 stars on GitHub - 1 maintainer
fxtools 0.2.32
A collection of commandline Fasta/Fastq utility tools32 versions - Latest release: about 1 month ago - 9.12 thousand downloads total - 2 stars on GitHub - 1 maintainer
miniprot-sys 0.1.0
Bindings to libminiprot1 version - Latest release: over 1 year ago - 413 downloads total - 0 stars on GitHub - 1 maintainer
mmft 0.1.0
A minimal fasta toolkit.1 version - Latest release: almost 2 years ago - 401 downloads total - 6 stars on GitHub - 1 maintainer
fastx 0.2.1
FastX reads Fasta and FastQ files with little overhead.4 versions - Latest release: 5 months ago - 1 dependent package - 1.7 thousand downloads total - 2 stars on GitHub - 1 maintainer
stats_on_gff3 0.1.26
Calculate statistics such as CDS GC3 ratio, intron GC ratio, flanking gene region GC ratio, first...26 versions - Latest release: 3 months ago - 8.02 thousand downloads total - 1 maintainer
bamsalvage 0.1.3
Rust version of bamsalvage, retrieving sequences from a corrupted BAM file as much as possible.1 version - Latest release: about 1 year ago - 355 downloads total - 1 stars on GitHub - 1 maintainer
stats_on_gff3_ncbi 0.1.52
Calculate statistics such as CDS GC3 ratio, intron GC ratio, flanking gene region GC ratio, first...29 versions - Latest release: 3 months ago - 10.3 thousand downloads total - 1 maintainer
stats_on_genomes 0.1.1
Calculate 2 simple ratio on the whole genome: GC ratio and repetition ratio.2 versions - Latest release: 4 months ago - 853 downloads total - 1 maintainer
fffx 0.1.3
Another fasta/q/x file format parser. Well fuzzed.4 versions - Latest release: 11 months ago - 2 dependent packages - 1 dependent repositories - 5.63 thousand downloads total - 0 stars on GitHub - 1 maintainer
minimap2-sys 0.1.18+minimap2.2.27
Bindings to libminimap217 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 8.7 thousand downloads total - 51 stars on GitHub - 1 maintainer
minimap2 0.1.17+minimap2.2.27
Bindings to libminimap213 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 7.4 thousand downloads total - 51 stars on GitHub - 1 maintainer
seqsample 0.2.0
Randomly sample sequences from a FASTA file2 versions - Latest release: about 1 year ago - 711 downloads total - 0 stars on GitHub - 1 maintainer
fusta 1.7.1
FUSTA leverages the FUSE interface to transparently manipulate multiFASTA files as independent files3 versions - Latest release: over 1 year ago - 1.05 thousand downloads total - 16 stars on GitHub - 1 maintainer
tarnished 0.4.0
Very simple CLI app for testing the percent of nucleotides in FASTA files4 versions - Latest release: over 1 year ago - 1.38 thousand downloads total - 0 stars on GitHub - 1 maintainer
bio-streams 0.3.1
Streaming bioinformatics data types2 versions - Latest release: 23 days ago - 184 downloads total - 5 stars on GitHub - 1 maintainer
Top 8.9% on crates.io
12 versions - Latest release: 10 months ago - 23 dependent packages - 16 dependent repositories - 29.7 thousand downloads total - 67 stars on GitHub - 1 maintainer
seq_io 0.3.2
Fast FASTA and FASTQ readers12 versions - Latest release: 10 months ago - 23 dependent packages - 16 dependent repositories - 29.7 thousand downloads total - 67 stars on GitHub - 1 maintainer
Top 7.8% on crates.io
15 versions - Latest release: about 1 year ago - 40 dependent packages - 24 dependent repositories - 181 thousand downloads total - 126 stars on GitHub - 4 maintainers
needletail 0.5.1
FASTX parsing and k-mer methods15 versions - Latest release: about 1 year ago - 40 dependent packages - 24 dependent repositories - 181 thousand downloads total - 126 stars on GitHub - 4 maintainers
seqdupes 0.1.0
Compress sequence duplicates1 version - Latest release: over 1 year ago - 355 downloads total - 0 stars on GitHub - 1 maintainer
syncmers 0.1.5
Rust library for finding syncmers5 versions - Latest release: over 1 year ago - 1 dependent package - 2.16 thousand downloads total - 5 stars on GitHub - 1 maintainer
fasta_windows 0.2.4
Make quick statistics in windows from a fasta file.2 versions - Latest release: almost 2 years ago - 767 downloads total - 11 stars on GitHub - 1 maintainer
faimm 0.5.0
Random access to indexed fasta using a mmapped file6 versions - Latest release: about 2 months ago - 2 dependent packages - 2 dependent repositories - 3.4 thousand downloads total - 7 stars on GitHub - 1 maintainer
fastleng 0.2.0
fastleng - read length statistics tool3 versions - Latest release: about 1 year ago - 1.08 thousand downloads total - 2 stars on GitHub - 1 maintainer
psdm 0.2.0
Compute a pairwise SNP distance matrix from one or two alignment(s)2 versions - Latest release: almost 2 years ago - 714 downloads total - 16 stars on GitHub - 1 maintainer
fastix 0.1.0
prefix renaming FASTA records1 version - Latest release: 10 months ago - 505 downloads total - 11 stars on GitHub - 1 maintainer
seqsplitter 0.1.4
Parses fasta records based on list of either header names or regexes5 versions - Latest release: over 1 year ago - 1.47 thousand downloads total - 0 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
21
fastq
16
rust
7
genomics
5
alignment
5
compression
3
bio
3
gff3
3
ffi
3
protein
2
fai
2
indexed
2
sequencing
2
fastx
2
longread
2
minimap2
2
sequence-alignment
2
spliced-alignment
2
sequence
2
cli
2
bam
2
bamsalvage
1
fasta-parser
1
fasta-format
1
fa
1
fuse
1
count
1
tui
1
nucleotide
1
parser
1
kmer
1
syncmers
1
windows
1
long-read-sequencing
1
next-generation-sequencing
1
quality-metrics
1
matrix
1
pairwise
1
snp
1
distance
1
gtf
1
transcriptome
1
gff
1
rna
1
dna
1
random
1
genome-analysis
1
biology
1
computational-biology
1
genes
1
genetics
1
downsample
1
indexed-fasta
1
query
1
subsampling
1
coverage
1
toolkit
1
hts
1
tools
1
genome
1
long-read
1