Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

crates.io "bioinformatics" keyword

minimap2-sys 0.1.18+minimap2.2.27
Bindings to libminimap2
17 versions - Latest release: 2 months ago - 1 dependent package - 1 dependent repositories - 8.7 thousand downloads total - 51 stars on GitHub - 1 maintainer
minimap2 0.1.17+minimap2.2.27
Bindings to libminimap2
13 versions - Latest release: 2 months ago - 1 dependent package - 1 dependent repositories - 7.4 thousand downloads total - 51 stars on GitHub - 1 maintainer
rust-lapper 1.1.0
A fast and easy interval overlap library
26 versions - Latest release: over 1 year ago - 15 dependent packages - 25 dependent repositories - 214 thousand downloads total - 50 stars on GitHub - 1 maintainer
give_a_sheet 0.1.2
Toolkit for generating input samplesheets for a variety of nf-core pipelines.
3 versions - Latest release: about 1 month ago - 809 downloads total - 0 stars on GitHub - 1 maintainer
fakit 0.3.3
fakit: a simple program for fasta file manipulation
19 versions - Latest release: about 2 months ago - 5.21 thousand downloads total - 0 stars on GitHub - 1 maintainer
aa-colour 0.1.1
Add some colours to your amino acids.
1 version - Latest release: over 3 years ago - 596 downloads total - 1 maintainer
wort 0.1.0
Command line client for the wort API
1 version - Latest release: over 5 years ago - 837 downloads total - 17 stars on GitHub - 1 maintainer
blobtk 0.5.3
Core utilities for BlobToolKit.
17 versions - Latest release: 4 months ago - 4.65 thousand downloads total - 2 stars on GitHub - 1 maintainer
xdrfile 0.3.0
Wrapper around the gromacs libxdrfile library. Can be used to read and write gromacs trajectories...
3 versions - Latest release: over 3 years ago - 1 dependent package - 1.55 thousand downloads total - 1 maintainer
libparasail-sys 0.1.6
Unsafe Rust bindings for the parasail C library
7 versions - Latest release: about 1 month ago - 1 dependent package - 2.77 thousand downloads total - 0 stars on GitHub - 1 maintainer
rustybam 0.1.33
bioinformatics toolkit in rust
35 versions - Latest release: 11 months ago - 10.3 thousand downloads total - 68 stars on GitHub - 1 maintainer
libsfasta 0.3.4
Better FASTA sequence compression and querying
2 versions - Latest release: over 1 year ago - 1 dependent package - 1.01 thousand downloads total - 27 stars on GitHub - 1 maintainer
sfasta 0.3.5
Better FASTA sequence compression and querying
6 versions - Latest release: over 1 year ago - 1.84 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon 0.21.0 💰
A platform for scientific data processing and analysis.
86 versions - Latest release: 1 day ago - 3 dependent packages - 1 dependent repositories - 29.5 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-gff 0.21.0 💰
A library for reading and writing GFF files with Exon.
49 versions - Latest release: 1 day ago - 1 dependent package - 16.9 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-gtf 0.21.0 💰
GTF datasource for Exon
41 versions - Latest release: 1 day ago - 1 dependent package - 14.2 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-fcs 0.21.0 💰
Exon FCS
33 versions - Latest release: 1 day ago - 1 dependent package - 11.4 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-mzml 0.21.0 💰
Exon MzML
33 versions - Latest release: 1 day ago - 1 dependent package - 11.3 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-genbank 0.21.0 💰
Exon GenBank
33 versions - Latest release: 1 day ago - 1 dependent package - 11.4 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-io 0.21.0 💰
IO utilities for Exon.
53 versions - Latest release: 1 day ago - 1 dependent package - 18.6 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-fasta 0.21.0 💰
A library for reading and writing FASTA files with Exon.
51 versions - Latest release: 1 day ago - 1 dependent package - 17.4 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-fastq 0.21.0 💰
FASTQ support for Exon.
43 versions - Latest release: 1 day ago - 1 dependent package - 14.9 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-bigwig 0.21.0 💰
Subcrate of the `exon` crate for working with BigWig files.
13 versions - Latest release: 1 day ago - 1 dependent package - 2.7 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-cram 0.21.0 💰
Exon CRAM
14 versions - Latest release: 1 day ago - 1 dependent package - 3.71 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-common 0.21.0 💰
Common utilities for Exon
54 versions - Latest release: 1 day ago - 15 dependent packages - 20 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-sam 0.21.0 💰
Exon SAM
34 versions - Latest release: 1 day ago - 3 dependent packages - 10.8 thousand downloads total - 27 stars on GitHub - 1 maintainer
bgzip 0.3.1
Rust implementation of bgzip
9 versions - Latest release: over 1 year ago - 8 dependent packages - 18 dependent repositories - 43.1 thousand downloads total - 14 stars on GitHub - 1 maintainer
genomap 0.2.6
A small library for storing generic genomic data indexed by a chromosome.
6 versions - Latest release: 3 months ago - 2 dependent packages - 1.97 thousand downloads total - 16 stars on GitHub - 1 maintainer
thirdkind 3.5.2
Read phylogenetic tree(s) in newick, phyloXML or recPhyloXML file and build a svg representation...
79 versions - Latest release: 2 days ago - 25.6 thousand downloads total - 12 stars on GitHub - 1 maintainer
exon-benchmarks 0.3.3
Executable benchmarks for exon
18 versions - Latest release: 7 months ago - 4.4 thousand downloads total - 1 maintainer
nucleob 1.1.1 💰
bioinformatics: nucleobases and amino acids statistics
5 versions - Latest release: over 1 year ago - 1.53 thousand downloads total - 0 stars on GitHub - 1 maintainer
kractor 0.4.0
Extract reads from a FASTQ file based on taxonomic classification via Kraken2.
1 version - Latest release: 7 months ago - 332 downloads total - 1 stars on GitHub - 1 maintainer
krakenxtract 0.4.0
Extract reads from a FASTQ file based on taxonomic classification via Kraken2.
4 versions - Latest release: 7 months ago - 1.1 thousand downloads total - 1 stars on GitHub - 1 maintainer
sourmash 0.13.1
tools for comparing biological sequences with k-mer sketches
14 versions - Latest release: about 2 months ago - 1 dependent package - 2 dependent repositories - 10.2 thousand downloads total - 431 stars on GitHub - 1 maintainer
fusta 1.7.1
FUSTA leverages the FUSE interface to transparently manipulate multiFASTA files as independent files
3 versions - Latest release: over 1 year ago - 1.05 thousand downloads total - 16 stars on GitHub - 1 maintainer
nom-gtf
A barebones GTF reader written with nom
3 versions - Latest release: 2 days ago - 865 downloads total - 1 stars on GitHub - 1 maintainer
conshomfold 0.1.1
ConsHomfold, which Predicts Global Single RNA Secondary Structures to Consider Sparse Global Pair...
2 versions - Latest release: over 3 years ago - 1 dependent package - 1 thousand downloads total - 1 maintainer
nthash 0.5.1
ntHash is a rolling hash function for hashing all possible k-mers in a DNA sequence.
9 versions - Latest release: over 2 years ago - 2 dependent packages - 1 dependent repositories - 6.87 thousand downloads total - 30 stars on GitHub - 1 maintainer
gtftools 0.1.9
A barebones GTF toolkit with fast nom-based IO
6 versions - Latest release: 10 months ago - 3 dependent packages - 2.02 thousand downloads total - 1 stars on GitHub - 1 maintainer
gpu-sw 1.0.4
GPU-SW, GPGPU-enabled SW algorithm
5 versions - Latest release: almost 7 years ago - 3.69 thousand downloads total - 1 maintainer
prot_translate 0.1.0
Translate nucleotide sequence to protein.
1 version - Latest release: about 1 month ago - 224 downloads total - 1 maintainer
chiral-cli-common 0.1.2
Common Types, Traits and Structs for Chiral Command-Line-Interface
2 versions - Latest release: over 1 year ago - 1 dependent repositories - 631 downloads total - 0 stars on GitHub - 1 maintainer
blastdb-sequence-util 0.1.0
Utilities for encoding nucleotide/protein sequences in BLAST database format.
1 version - Latest release: about 1 year ago - 360 downloads total - 1 maintainer
pilercr-parser 1.1.0
A parser for the output of the PILER-CR CRISPR array annotation tool
4 versions - Latest release: over 1 year ago - 1.22 thousand downloads total - 0 stars on GitHub - 1 maintainer
wdl 0.2.0
Document lexing, parsing, validation, and linting for Workflow Description Language (WDL) documents
3 versions - Latest release: 5 months ago - 1 dependent package - 986 downloads total - 15 stars on GitHub - 1 maintainer
wdl-grammar 0.2.0
A parse tree for Workflow Description Language (WDL) documents
2 versions - Latest release: 5 months ago - 3 dependent packages - 965 downloads total - 15 stars on GitHub - 1 maintainer
wdl-ast 0.1.0
An abstract syntax tree for Workflow Description Language (WDL) documents
2 versions - Latest release: 5 months ago - 2 dependent packages - 758 downloads total - 15 stars on GitHub - 1 maintainer
wdl-macros 0.1.0
Macros used within the `wdl` crate ecosystem.
1 version - Latest release: 5 months ago - 2 dependent packages - 605 downloads total - 15 stars on GitHub - 1 maintainer
rust-seq2kminmers 0.1.0
Construction and iteration of k-min-mers from a DNA sequence.
1 version - Latest release: over 1 year ago - 391 downloads total - 1 maintainer
lorikeet-genome 0.8.2
Strain resolver and variant caller via local reassembly for metagenomics
1 version - Latest release: 5 months ago - 266 downloads total - 64 stars on GitHub - 1 maintainer
alpha-rra 0.1.5
An implementation of the Alpha-RRA algorithm for p-value aggregation on groups of genes
5 versions - Latest release: over 1 year ago - 1 dependent package - 2.23 thousand downloads total - 1 stars on GitHub - 1 maintainer
crast 1.0.4
CRAST, Context RNA Alignment Search Tool
5 versions - Latest release: almost 7 years ago - 3.51 thousand downloads total - 1 maintainer
chiral-operator 0.1.2
Operators f Chiral: An All-in-One Data Processing Tool
3 versions - Latest release: over 1 year ago - 2 dependent packages - 1 dependent repositories - 1.39 thousand downloads total - 0 stars on GitHub - 1 maintainer
tarnished 0.4.0
Very simple CLI app for testing the percent of nucleotides in FASTA files
4 versions - Latest release: over 1 year ago - 1.38 thousand downloads total - 0 stars on GitHub - 1 maintainer
chiral-computing-unit 0.1.2
Computing Units of Chiral: An All-in-One Data Processing Tool
2 versions - Latest release: over 1 year ago - 635 downloads total - 0 stars on GitHub - 1 maintainer
rust-parallelfastx 0.1.1
Parallel iteration of FASTA/FASTQ files, for when sequence order doesn't matter but speed does
2 versions - Latest release: over 1 year ago - 688 downloads total - 1 maintainer
segul 0.21.3
An ultrafast and memory efficient tool for phylogenomics
59 versions - Latest release: 3 days ago - 1 dependent package - 17.9 thousand downloads total - 13 stars on GitHub - 1 maintainer
minced
A parser for the output of the MinCED CRISPR array annotation tool
1 version - Latest release: 3 days ago - 253 downloads total - 0 stars on GitHub - 1 maintainer
sgcount 0.1.32
A fast and flexible sgRNA counter
14 versions - Latest release: 3 months ago - 4 thousand downloads total - 8 stars on GitHub - 1 maintainer
minced-parser 2.0.0
A parser for the output of the MinCED CRISPR array annotation tool
2 versions - Latest release: over 1 year ago - 605 downloads total - 0 stars on GitHub - 1 maintainer
bio-seq 0.12.4
Bit packed and well-typed biological sequences
13 versions - Latest release: 3 days ago - 1 dependent package - 3.41 thousand downloads total - 16 stars on GitHub - 1 maintainer
bio-streams 0.3.1
Streaming bioinformatics data types
2 versions - Latest release: 3 days ago - 184 downloads total - 5 stars on GitHub - 1 maintainer
cgt_bacpop 0.1.0
Label core and rare genes in pangenome dataa
1 version - Latest release: 4 months ago - 309 downloads total - 2 stars on GitHub - 1 maintainer
bed-reader 1.0.2
Read and write the PLINK BED format, simply and efficiently.
29 versions - Latest release: 3 months ago - 9.69 thousand downloads total - 67 stars on GitHub - 1 maintainer
genomicsqlite 0.9.4
Genomics Extension for SQLite
16 versions - Latest release: about 1 year ago - 6.57 thousand downloads total - 152 stars on GitHub - 1 maintainer
fqkit 0.4.5
fqkit: a simple and cross-platform program for fastq file manipulation
42 versions - Latest release: 4 days ago - 11.6 thousand downloads total - 0 stars on GitHub - 1 maintainer
ontime 0.3.1
Extract subsets of ONT (Nanopore) reads based on time
7 versions - Latest release: 3 months ago - 1.99 thousand downloads total - 16 stars on GitHub - 1 maintainer
freesasa-rs 0.1.3
Rust (safe) bindings for the freesasa library
1 version - Latest release: about 1 month ago - 207 downloads total - 5 stars on GitHub - 1 maintainer
skani 0.1.1
skani is a fast tool for calculating ANI between metagenomic sequences, such as metagenome-assemb...
2 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 1.34 thousand downloads total - 127 stars on GitHub - 1 maintainer
Top 4.9% on crates.io
rust-htslib 0.46.0
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
60 versions - Latest release: 3 months ago - 46 dependent packages - 54 dependent repositories - 302 thousand downloads total - 260 stars on GitHub - 1 maintainer
Top 7.8% on crates.io
needletail 0.5.1
FASTX parsing and k-mer methods
15 versions - Latest release: about 1 year ago - 40 dependent packages - 24 dependent repositories - 181 thousand downloads total - 126 stars on GitHub - 4 maintainers
lightmotif-io 0.6.0
Motif parsers implementation for the lightmotif crate.
1 version - Latest release: 5 months ago - 2 dependent packages - 799 downloads total - 34 stars on GitHub - 1 maintainer
lightmotif 0.6.0
A lightweight platform-accelerated library for biological motif scanning using position weight ma...
8 versions - Latest release: 5 months ago - 5 dependent packages - 4.05 thousand downloads total - 34 stars on GitHub - 1 maintainer
exon-vcf 0.20.0 💰
Exon VCF
32 versions - Latest release: 23 days ago - 2 dependent packages - 10.7 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-bcf 0.20.0 💰
Exon BCF
32 versions - Latest release: 23 days ago - 1 dependent package - 10.6 thousand downloads total - 27 stars on GitHub - 1 maintainer
distmat 0.3.0
Distance matrix data types and file formats
3 versions - Latest release: over 1 year ago - 1 dependent package - 985 downloads total - 0 stars on GitHub - 1 maintainer
census-proteomics 0.3.3
Rust library for working with proteomics data quantified by the Census algorithm
12 versions - Latest release: over 3 years ago - 1 dependent package - 1 dependent repositories - 6.9 thousand downloads total - 3 stars on GitHub - 1 maintainer
scispeak 0.1.0
A tool for converting Sci-RNA-Seq3 files to 10X Genomics compatible FASTQ files.
1 version - Latest release: 7 months ago - 345 downloads total - 0 stars on GitHub - 1 maintainer
taxonomy 0.10.0
Routines for loading, saving, and manipulating taxonomic trees
17 versions - Latest release: over 1 year ago - 1 dependent package - 8.78 thousand downloads total - 32 stars on GitHub - 4 maintainers
bed2gff 0.1.5
A Rust BED-to-GFF3 parallel translator
6 versions - Latest release: about 1 month ago - 1.83 thousand downloads total - 6 stars on GitHub - 1 maintainer
bed2gtf 1.9.2
A fast and memory efficient BED to GTF converter
12 versions - Latest release: about 1 month ago - 3.52 thousand downloads total - 8 stars on GitHub - 1 maintainer
omnitigs 5.0.1
Omnitig-related algorithms
33 versions - Latest release: 10 months ago - 1 dependent repositories - 10.2 thousand downloads total - 0 stars on GitHub - 1 maintainer
samcomp 0.1.3
A comparison tool for Sequence Alignment/Map files.
4 versions - Latest release: almost 2 years ago - 1.18 thousand downloads total - 0 stars on GitHub - 1 maintainer
rm-frust5-api 0.0.3
A rust wrapper of the HDF5 crate for handling Oxford Nanopore Technologies FAST5 files.
3 versions - Latest release: about 2 years ago - 1.12 thousand downloads total - 0 stars on GitHub - 1 maintainer
vcf 0.6.1
VCF Parser
11 versions - Latest release: over 1 year ago - 1 dependent package - 2 dependent repositories - 9.54 thousand downloads total - 22 stars on GitHub - 1 maintainer
read-structure 0.2.0 💰
Library for parsing and working with read structure descriptions
3 versions - Latest release: 12 months ago - 1 dependent package - 2 dependent repositories - 2.01 thousand downloads total - 3 stars on GitHub - 2 maintainers
pooled-writer 0.3.0 💰
Library for using N threads to write to M compressed files/writers.
2 versions - Latest release: over 1 year ago - 1 dependent package - 2 dependent repositories - 1.91 thousand downloads total - 4 stars on GitHub - 3 maintainers
bgzf 0.2.0 💰
Utility library for working with explicitly BGZF compressed data
1 version - Latest release: about 2 years ago - 1 dependent package - 3 dependent repositories - 2.16 thousand downloads total - 2 stars on GitHub - 3 maintainers
fffx 0.1.3
Another fasta/q/x file format parser. Well fuzzed.
4 versions - Latest release: 11 months ago - 2 dependent packages - 1 dependent repositories - 5.41 thousand downloads total - 0 stars on GitHub - 1 maintainer
crussmap 1.0.1
crussmap is a faster tool to convert genome coordinates between difference reference assemblies. ...
2 versions - Latest release: about 1 year ago - 576 downloads total - 9 stars on GitHub - 1 maintainer
rustynuc 0.3.0
Quick analysis of pileups for likely 8-oxoG locations
2 versions - Latest release: over 3 years ago - 1.07 thousand downloads total - 0 stars on GitHub - 1 maintainer
nafcodec 0.2.0
Rust coder/decoder for Nucleotide Archive Format (NAF) files.
3 versions - Latest release: about 1 month ago - 1 dependent package - 1.01 thousand downloads total - 3 stars on GitHub - 1 maintainer
nafcodec-py 0.2.0
PyO3 bindings and Python interface to the nafcodec crate.
2 versions - Latest release: about 1 month ago - 547 downloads total - 3 stars on GitHub - 1 maintainer
sa-ord 0.0.1
Pure Rust implementation of the Suffix Array by Induced Sorting algorithm.
1 version - Latest release: over 1 year ago - 365 downloads total - 3 stars on GitHub - 1 maintainer
ring_api 0.1.0
Strongly-typed client for the RING HTTP API
1 version - Latest release: almost 5 years ago - 710 downloads total - 2 stars on GitHub - 1 maintainer
slow5 0.11.0
Library for interacting with slow5
13 versions - Latest release: 9 months ago - 4.1 thousand downloads total - 9 stars on GitHub - 1 maintainer
slow5lib-sys 0.9.1+slow5lib.1.1.0
Low-level bindings to the slow5lib C library
12 versions - Latest release: 2 months ago - 1 dependent package - 1 dependent repositories - 4.82 thousand downloads total - 9 stars on GitHub - 1 maintainer
aa-name 0.1.4
Basic enum for amino acid names.
1 version - Latest release: over 3 years ago - 1 dependent package - 1.23 thousand downloads total - 2 stars on GitHub - 1 maintainer
aa_similarity 0.1.0
Substitution matrices for use in protein sequence analysis and alignment.
1 version - Latest release: over 3 years ago - 737 downloads total - 2 stars on GitHub - 1 maintainer
syncmers 0.1.5
Rust library for finding syncmers
5 versions - Latest release: over 1 year ago - 1 dependent package - 2.16 thousand downloads total - 5 stars on GitHub - 1 maintainer