Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
crates.io "bioinformatics" keyword
minimap2-sys 0.1.18+minimap2.2.27
Bindings to libminimap217 versions - Latest release: 2 months ago - 1 dependent package - 1 dependent repositories - 8.7 thousand downloads total - 51 stars on GitHub - 1 maintainer
minimap2 0.1.17+minimap2.2.27
Bindings to libminimap213 versions - Latest release: 2 months ago - 1 dependent package - 1 dependent repositories - 7.4 thousand downloads total - 51 stars on GitHub - 1 maintainer
rust-lapper 1.1.0
A fast and easy interval overlap library26 versions - Latest release: over 1 year ago - 15 dependent packages - 25 dependent repositories - 214 thousand downloads total - 50 stars on GitHub - 1 maintainer
give_a_sheet 0.1.2
Toolkit for generating input samplesheets for a variety of nf-core pipelines.3 versions - Latest release: about 1 month ago - 809 downloads total - 0 stars on GitHub - 1 maintainer
fakit 0.3.3
fakit: a simple program for fasta file manipulation19 versions - Latest release: about 2 months ago - 5.21 thousand downloads total - 0 stars on GitHub - 1 maintainer
aa-colour 0.1.1
Add some colours to your amino acids.1 version - Latest release: over 3 years ago - 596 downloads total - 1 maintainer
wort 0.1.0
Command line client for the wort API1 version - Latest release: over 5 years ago - 837 downloads total - 17 stars on GitHub - 1 maintainer
blobtk 0.5.3
Core utilities for BlobToolKit.17 versions - Latest release: 4 months ago - 4.65 thousand downloads total - 2 stars on GitHub - 1 maintainer
xdrfile 0.3.0
Wrapper around the gromacs libxdrfile library. Can be used to read and write gromacs trajectories...3 versions - Latest release: over 3 years ago - 1 dependent package - 1.55 thousand downloads total - 1 maintainer
libparasail-sys 0.1.6
Unsafe Rust bindings for the parasail C library7 versions - Latest release: about 1 month ago - 1 dependent package - 2.77 thousand downloads total - 0 stars on GitHub - 1 maintainer
rustybam 0.1.33
bioinformatics toolkit in rust35 versions - Latest release: 11 months ago - 10.3 thousand downloads total - 68 stars on GitHub - 1 maintainer
libsfasta 0.3.4
Better FASTA sequence compression and querying2 versions - Latest release: over 1 year ago - 1 dependent package - 1.01 thousand downloads total - 27 stars on GitHub - 1 maintainer
sfasta 0.3.5
Better FASTA sequence compression and querying6 versions - Latest release: over 1 year ago - 1.84 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon 0.21.0 💰
A platform for scientific data processing and analysis.86 versions - Latest release: 1 day ago - 3 dependent packages - 1 dependent repositories - 29.5 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-gff 0.21.0 💰
A library for reading and writing GFF files with Exon.49 versions - Latest release: 1 day ago - 1 dependent package - 16.9 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-gtf 0.21.0 💰
GTF datasource for Exon41 versions - Latest release: 1 day ago - 1 dependent package - 14.2 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-fcs 0.21.0 💰
Exon FCS33 versions - Latest release: 1 day ago - 1 dependent package - 11.4 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-mzml 0.21.0 💰
Exon MzML33 versions - Latest release: 1 day ago - 1 dependent package - 11.3 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-genbank 0.21.0 💰
Exon GenBank33 versions - Latest release: 1 day ago - 1 dependent package - 11.4 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-io 0.21.0 💰
IO utilities for Exon.53 versions - Latest release: 1 day ago - 1 dependent package - 18.6 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-fasta 0.21.0 💰
A library for reading and writing FASTA files with Exon.51 versions - Latest release: 1 day ago - 1 dependent package - 17.4 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-fastq 0.21.0 💰
FASTQ support for Exon.43 versions - Latest release: 1 day ago - 1 dependent package - 14.9 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-bigwig 0.21.0 💰
Subcrate of the `exon` crate for working with BigWig files.13 versions - Latest release: 1 day ago - 1 dependent package - 2.7 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-cram 0.21.0 💰
Exon CRAM14 versions - Latest release: 1 day ago - 1 dependent package - 3.71 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-common 0.21.0 💰
Common utilities for Exon54 versions - Latest release: 1 day ago - 15 dependent packages - 20 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-sam 0.21.0 💰
Exon SAM34 versions - Latest release: 1 day ago - 3 dependent packages - 10.8 thousand downloads total - 27 stars on GitHub - 1 maintainer
bgzip 0.3.1
Rust implementation of bgzip9 versions - Latest release: over 1 year ago - 8 dependent packages - 18 dependent repositories - 43.1 thousand downloads total - 14 stars on GitHub - 1 maintainer
genomap 0.2.6
A small library for storing generic genomic data indexed by a chromosome.6 versions - Latest release: 3 months ago - 2 dependent packages - 1.97 thousand downloads total - 16 stars on GitHub - 1 maintainer
thirdkind 3.5.2
Read phylogenetic tree(s) in newick, phyloXML or recPhyloXML file and build a svg representation...79 versions - Latest release: 2 days ago - 25.6 thousand downloads total - 12 stars on GitHub - 1 maintainer
exon-benchmarks 0.3.3
Executable benchmarks for exon18 versions - Latest release: 7 months ago - 4.4 thousand downloads total - 1 maintainer
nucleob 1.1.1 💰
bioinformatics: nucleobases and amino acids statistics5 versions - Latest release: over 1 year ago - 1.53 thousand downloads total - 0 stars on GitHub - 1 maintainer
kractor 0.4.0
Extract reads from a FASTQ file based on taxonomic classification via Kraken2.1 version - Latest release: 7 months ago - 332 downloads total - 1 stars on GitHub - 1 maintainer
krakenxtract 0.4.0
Extract reads from a FASTQ file based on taxonomic classification via Kraken2.4 versions - Latest release: 7 months ago - 1.1 thousand downloads total - 1 stars on GitHub - 1 maintainer
sourmash 0.13.1
tools for comparing biological sequences with k-mer sketches14 versions - Latest release: about 2 months ago - 1 dependent package - 2 dependent repositories - 10.2 thousand downloads total - 431 stars on GitHub - 1 maintainer
fusta 1.7.1
FUSTA leverages the FUSE interface to transparently manipulate multiFASTA files as independent files3 versions - Latest release: over 1 year ago - 1.05 thousand downloads total - 16 stars on GitHub - 1 maintainer
nom-gtf
A barebones GTF reader written with nom3 versions - Latest release: 2 days ago - 865 downloads total - 1 stars on GitHub - 1 maintainer
conshomfold 0.1.1
ConsHomfold, which Predicts Global Single RNA Secondary Structures to Consider Sparse Global Pair...2 versions - Latest release: over 3 years ago - 1 dependent package - 1 thousand downloads total - 1 maintainer
nthash 0.5.1
ntHash is a rolling hash function for hashing all possible k-mers in a DNA sequence.9 versions - Latest release: over 2 years ago - 2 dependent packages - 1 dependent repositories - 6.87 thousand downloads total - 30 stars on GitHub - 1 maintainer
gtftools 0.1.9
A barebones GTF toolkit with fast nom-based IO6 versions - Latest release: 10 months ago - 3 dependent packages - 2.02 thousand downloads total - 1 stars on GitHub - 1 maintainer
gpu-sw 1.0.4
GPU-SW, GPGPU-enabled SW algorithm5 versions - Latest release: almost 7 years ago - 3.69 thousand downloads total - 1 maintainer
prot_translate 0.1.0
Translate nucleotide sequence to protein.1 version - Latest release: about 1 month ago - 224 downloads total - 1 maintainer
chiral-cli-common 0.1.2
Common Types, Traits and Structs for Chiral Command-Line-Interface2 versions - Latest release: over 1 year ago - 1 dependent repositories - 631 downloads total - 0 stars on GitHub - 1 maintainer
blastdb-sequence-util 0.1.0
Utilities for encoding nucleotide/protein sequences in BLAST database format.1 version - Latest release: about 1 year ago - 360 downloads total - 1 maintainer
pilercr-parser 1.1.0
A parser for the output of the PILER-CR CRISPR array annotation tool4 versions - Latest release: over 1 year ago - 1.22 thousand downloads total - 0 stars on GitHub - 1 maintainer
wdl 0.2.0
Document lexing, parsing, validation, and linting for Workflow Description Language (WDL) documents3 versions - Latest release: 5 months ago - 1 dependent package - 986 downloads total - 15 stars on GitHub - 1 maintainer
wdl-grammar 0.2.0
A parse tree for Workflow Description Language (WDL) documents2 versions - Latest release: 5 months ago - 3 dependent packages - 965 downloads total - 15 stars on GitHub - 1 maintainer
wdl-ast 0.1.0
An abstract syntax tree for Workflow Description Language (WDL) documents2 versions - Latest release: 5 months ago - 2 dependent packages - 758 downloads total - 15 stars on GitHub - 1 maintainer
wdl-macros 0.1.0
Macros used within the `wdl` crate ecosystem.1 version - Latest release: 5 months ago - 2 dependent packages - 605 downloads total - 15 stars on GitHub - 1 maintainer
rust-seq2kminmers 0.1.0
Construction and iteration of k-min-mers from a DNA sequence.1 version - Latest release: over 1 year ago - 391 downloads total - 1 maintainer
lorikeet-genome 0.8.2
Strain resolver and variant caller via local reassembly for metagenomics1 version - Latest release: 5 months ago - 266 downloads total - 64 stars on GitHub - 1 maintainer
alpha-rra 0.1.5
An implementation of the Alpha-RRA algorithm for p-value aggregation on groups of genes5 versions - Latest release: over 1 year ago - 1 dependent package - 2.23 thousand downloads total - 1 stars on GitHub - 1 maintainer
crast 1.0.4
CRAST, Context RNA Alignment Search Tool5 versions - Latest release: almost 7 years ago - 3.51 thousand downloads total - 1 maintainer
chiral-operator 0.1.2
Operators f Chiral: An All-in-One Data Processing Tool3 versions - Latest release: over 1 year ago - 2 dependent packages - 1 dependent repositories - 1.39 thousand downloads total - 0 stars on GitHub - 1 maintainer
tarnished 0.4.0
Very simple CLI app for testing the percent of nucleotides in FASTA files4 versions - Latest release: over 1 year ago - 1.38 thousand downloads total - 0 stars on GitHub - 1 maintainer
chiral-computing-unit 0.1.2
Computing Units of Chiral: An All-in-One Data Processing Tool2 versions - Latest release: over 1 year ago - 635 downloads total - 0 stars on GitHub - 1 maintainer
rust-parallelfastx 0.1.1
Parallel iteration of FASTA/FASTQ files, for when sequence order doesn't matter but speed does2 versions - Latest release: over 1 year ago - 688 downloads total - 1 maintainer
segul 0.21.3
An ultrafast and memory efficient tool for phylogenomics59 versions - Latest release: 3 days ago - 1 dependent package - 17.9 thousand downloads total - 13 stars on GitHub - 1 maintainer
minced
A parser for the output of the MinCED CRISPR array annotation tool1 version - Latest release: 3 days ago - 253 downloads total - 0 stars on GitHub - 1 maintainer
sgcount 0.1.32
A fast and flexible sgRNA counter14 versions - Latest release: 3 months ago - 4 thousand downloads total - 8 stars on GitHub - 1 maintainer
minced-parser 2.0.0
A parser for the output of the MinCED CRISPR array annotation tool2 versions - Latest release: over 1 year ago - 605 downloads total - 0 stars on GitHub - 1 maintainer
bio-seq 0.12.4
Bit packed and well-typed biological sequences13 versions - Latest release: 3 days ago - 1 dependent package - 3.41 thousand downloads total - 16 stars on GitHub - 1 maintainer
bio-streams 0.3.1
Streaming bioinformatics data types2 versions - Latest release: 3 days ago - 184 downloads total - 5 stars on GitHub - 1 maintainer
cgt_bacpop 0.1.0
Label core and rare genes in pangenome dataa1 version - Latest release: 4 months ago - 309 downloads total - 2 stars on GitHub - 1 maintainer
bed-reader 1.0.2
Read and write the PLINK BED format, simply and efficiently.29 versions - Latest release: 3 months ago - 9.69 thousand downloads total - 67 stars on GitHub - 1 maintainer
genomicsqlite 0.9.4
Genomics Extension for SQLite16 versions - Latest release: about 1 year ago - 6.57 thousand downloads total - 152 stars on GitHub - 1 maintainer
fqkit 0.4.5
fqkit: a simple and cross-platform program for fastq file manipulation42 versions - Latest release: 4 days ago - 11.6 thousand downloads total - 0 stars on GitHub - 1 maintainer
ontime 0.3.1
Extract subsets of ONT (Nanopore) reads based on time7 versions - Latest release: 3 months ago - 1.99 thousand downloads total - 16 stars on GitHub - 1 maintainer
freesasa-rs 0.1.3
Rust (safe) bindings for the freesasa library1 version - Latest release: about 1 month ago - 207 downloads total - 5 stars on GitHub - 1 maintainer
skani 0.1.1
skani is a fast tool for calculating ANI between metagenomic sequences, such as metagenome-assemb...2 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 1.34 thousand downloads total - 127 stars on GitHub - 1 maintainer
Top 4.9% on crates.io
60 versions - Latest release: 3 months ago - 46 dependent packages - 54 dependent repositories - 302 thousand downloads total - 260 stars on GitHub - 1 maintainer
rust-htslib 0.46.0
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.60 versions - Latest release: 3 months ago - 46 dependent packages - 54 dependent repositories - 302 thousand downloads total - 260 stars on GitHub - 1 maintainer
Top 7.8% on crates.io
15 versions - Latest release: about 1 year ago - 40 dependent packages - 24 dependent repositories - 181 thousand downloads total - 126 stars on GitHub - 4 maintainers
needletail 0.5.1
FASTX parsing and k-mer methods15 versions - Latest release: about 1 year ago - 40 dependent packages - 24 dependent repositories - 181 thousand downloads total - 126 stars on GitHub - 4 maintainers
lightmotif-io 0.6.0
Motif parsers implementation for the lightmotif crate.1 version - Latest release: 5 months ago - 2 dependent packages - 799 downloads total - 34 stars on GitHub - 1 maintainer
lightmotif 0.6.0
A lightweight platform-accelerated library for biological motif scanning using position weight ma...8 versions - Latest release: 5 months ago - 5 dependent packages - 4.05 thousand downloads total - 34 stars on GitHub - 1 maintainer
exon-vcf 0.20.0 💰
Exon VCF32 versions - Latest release: 23 days ago - 2 dependent packages - 10.7 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-bcf 0.20.0 💰
Exon BCF32 versions - Latest release: 23 days ago - 1 dependent package - 10.6 thousand downloads total - 27 stars on GitHub - 1 maintainer
distmat 0.3.0
Distance matrix data types and file formats3 versions - Latest release: over 1 year ago - 1 dependent package - 985 downloads total - 0 stars on GitHub - 1 maintainer
census-proteomics 0.3.3
Rust library for working with proteomics data quantified by the Census algorithm12 versions - Latest release: over 3 years ago - 1 dependent package - 1 dependent repositories - 6.9 thousand downloads total - 3 stars on GitHub - 1 maintainer
scispeak 0.1.0
A tool for converting Sci-RNA-Seq3 files to 10X Genomics compatible FASTQ files.1 version - Latest release: 7 months ago - 345 downloads total - 0 stars on GitHub - 1 maintainer
taxonomy 0.10.0
Routines for loading, saving, and manipulating taxonomic trees17 versions - Latest release: over 1 year ago - 1 dependent package - 8.78 thousand downloads total - 32 stars on GitHub - 4 maintainers
bed2gff 0.1.5
A Rust BED-to-GFF3 parallel translator6 versions - Latest release: about 1 month ago - 1.83 thousand downloads total - 6 stars on GitHub - 1 maintainer
bed2gtf 1.9.2
A fast and memory efficient BED to GTF converter12 versions - Latest release: about 1 month ago - 3.52 thousand downloads total - 8 stars on GitHub - 1 maintainer
omnitigs 5.0.1
Omnitig-related algorithms33 versions - Latest release: 10 months ago - 1 dependent repositories - 10.2 thousand downloads total - 0 stars on GitHub - 1 maintainer
samcomp 0.1.3
A comparison tool for Sequence Alignment/Map files.4 versions - Latest release: almost 2 years ago - 1.18 thousand downloads total - 0 stars on GitHub - 1 maintainer
rm-frust5-api 0.0.3
A rust wrapper of the HDF5 crate for handling Oxford Nanopore Technologies FAST5 files.3 versions - Latest release: about 2 years ago - 1.12 thousand downloads total - 0 stars on GitHub - 1 maintainer
vcf 0.6.1
VCF Parser11 versions - Latest release: over 1 year ago - 1 dependent package - 2 dependent repositories - 9.54 thousand downloads total - 22 stars on GitHub - 1 maintainer
read-structure 0.2.0 💰
Library for parsing and working with read structure descriptions3 versions - Latest release: 12 months ago - 1 dependent package - 2 dependent repositories - 2.01 thousand downloads total - 3 stars on GitHub - 2 maintainers
pooled-writer 0.3.0 💰
Library for using N threads to write to M compressed files/writers.2 versions - Latest release: over 1 year ago - 1 dependent package - 2 dependent repositories - 1.91 thousand downloads total - 4 stars on GitHub - 3 maintainers
bgzf 0.2.0 💰
Utility library for working with explicitly BGZF compressed data1 version - Latest release: about 2 years ago - 1 dependent package - 3 dependent repositories - 2.16 thousand downloads total - 2 stars on GitHub - 3 maintainers
fffx 0.1.3
Another fasta/q/x file format parser. Well fuzzed.4 versions - Latest release: 11 months ago - 2 dependent packages - 1 dependent repositories - 5.41 thousand downloads total - 0 stars on GitHub - 1 maintainer
crussmap 1.0.1
crussmap is a faster tool to convert genome coordinates between difference reference assemblies. ...2 versions - Latest release: about 1 year ago - 576 downloads total - 9 stars on GitHub - 1 maintainer
rustynuc 0.3.0
Quick analysis of pileups for likely 8-oxoG locations2 versions - Latest release: over 3 years ago - 1.07 thousand downloads total - 0 stars on GitHub - 1 maintainer
nafcodec 0.2.0
Rust coder/decoder for Nucleotide Archive Format (NAF) files.3 versions - Latest release: about 1 month ago - 1 dependent package - 1.01 thousand downloads total - 3 stars on GitHub - 1 maintainer
nafcodec-py 0.2.0
PyO3 bindings and Python interface to the nafcodec crate.2 versions - Latest release: about 1 month ago - 547 downloads total - 3 stars on GitHub - 1 maintainer
sa-ord 0.0.1
Pure Rust implementation of the Suffix Array by Induced Sorting algorithm.1 version - Latest release: over 1 year ago - 365 downloads total - 3 stars on GitHub - 1 maintainer
ring_api 0.1.0
Strongly-typed client for the RING HTTP API1 version - Latest release: almost 5 years ago - 710 downloads total - 2 stars on GitHub - 1 maintainer
slow5 0.11.0
Library for interacting with slow513 versions - Latest release: 9 months ago - 4.1 thousand downloads total - 9 stars on GitHub - 1 maintainer
slow5lib-sys 0.9.1+slow5lib.1.1.0
Low-level bindings to the slow5lib C library12 versions - Latest release: 2 months ago - 1 dependent package - 1 dependent repositories - 4.82 thousand downloads total - 9 stars on GitHub - 1 maintainer
aa-name 0.1.4
Basic enum for amino acid names.1 version - Latest release: over 3 years ago - 1 dependent package - 1.23 thousand downloads total - 2 stars on GitHub - 1 maintainer
aa_similarity 0.1.0
Substitution matrices for use in protein sequence analysis and alignment.1 version - Latest release: over 3 years ago - 737 downloads total - 2 stars on GitHub - 1 maintainer
syncmers 0.1.5
Rust library for finding syncmers5 versions - Latest release: over 1 year ago - 1 dependent package - 2.16 thousand downloads total - 5 stars on GitHub - 1 maintainer
Related Keywords
rust
77
genomics
43
ngs
28
rna
26
biology
24
protein
23
proteomics
23
fastq
22
arrow
21
datafusion
21
fasta
21
sql
21
cli
20
dna
17
sequencing
16
science
16
alignment
16
parser
15
rust-library
12
data
11
genetics
11
computational-biology
10
genomic
10
simd
10
crispr
10
bam
9
cheminformatics
9
secondary-structure
8
algorithms
8
genes
8
sequence
8
ffi
8
ncbi
7
minhash
7
gtf
7
ai
7
metagenomics
7
bioinfo
7
aws-lambda
6
htsget
6
sequence-analysis
6
rust-lang
6
noodles
6
serverless
6
compression
6
genome
6
graph
6
taxonomy
5
ensembl
5
sequence-motif
5
pssm
5
structural-alignment
5
nanopore
5
next-generation-sequencing
5
wdl
5
wdl-workflow
5
workflow
5
workflow-engine
5
command-line-tool
5
sequence-alignment
5
bio
5
compbio
5
transcriptomics
4
nom
4
sgrna
4
nucleotide
4
interval
4
hts
4
reproducibility
4
protein-sequences
4
motif
4
phylogenetics
4
gff3
4
bed
4
htslib
3
pileup
3
fast5
3
ranges
3
vcf
3
hpc
3
matrix
3
sketches
3
long-read
3
phylogenetic-trees
3
kraken
3
kmer
3
newick
3
sam
3
protein-structure
2
gene
2
cli-app
2
cas12
2
pdb
2
tree
2
python
2
peptides
2
minimap2
2
amino-acids
2
sqlite3
2
sqlite
2