Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "cancer" keyword
Top 9.9% on pypi.org
75 versions - Latest release: about 1 month ago - 1 dependent repositories - 376 downloads last month - 128 stars on GitHub - 3 maintainers
pvactools 4.2.0
A cancer immunotherapy tools suite75 versions - Latest release: about 1 month ago - 1 dependent repositories - 376 downloads last month - 128 stars on GitHub - 3 maintainers
panoptes-he 0.1.17
A multi-resolution CNN to predict cancer histopathologic features19 versions - Latest release: over 2 years ago - 1 dependent repositories - 78 downloads last month - 2 stars on GitHub - 1 maintainer
portpy 1.0.3
First open-source radiation treatment planning system in Python16 versions - Latest release: 5 months ago - 1 dependent repositories - 463 downloads last month - 77 stars on GitHub - 1 maintainer
cancer_data 0.3.6
Preprocessing for various cancer genomics datasets13 versions - Latest release: 2 months ago - 117 downloads last month - 14 stars on GitHub - 1 maintainer
snapit 0.145
Spliced Neoantigen Pipeline for Immunotherapy45 versions - Latest release: over 6 years ago - 1 dependent repositories - 65 downloads last month - 1 stars on GitHub - 1 maintainer
cptac 1.5.13
Python packaging for CPTAC data60 versions - Latest release: 3 months ago - 1 dependent repositories - 448 downloads last month - 81 stars on GitHub - 2 maintainers
Top 8.1% on pypi.org
14 versions - Latest release: 10 months ago - 2 dependent repositories - 2 maintainers
edrnsite.search 1.1.5
EDRN Public Portal Search14 versions - Latest release: 10 months ago - 2 dependent repositories - 2 maintainers
celligner 1.1.0 💰
A useful module for alligning cell lines to tumors4 versions - Latest release: almost 2 years ago - 22 downloads last month - 7 stars on GitHub - 1 maintainer
nedda 0.2
A library for TNM cancer staging1 version - Latest release: over 8 years ago - 2 dependent repositories - 9 downloads last month - 1 maintainer
synergy 0.5.1
Python package for calculating drug combination synergy24 versions - Latest release: almost 3 years ago - 1 dependent repositories - 851 downloads last month - 25 stars on GitHub - 1 maintainer
emmaa 1.17.0
Ecosystem of Machine-maintained Models with Automated Analysis15 versions - Latest release: almost 3 years ago - 1 dependent repositories - 45 downloads last month - 10 stars on GitHub - 1 maintainer
eke.labcas 0.0.3
Laboratory Catalog and Archive Service for the EDRN Knowledge Environment3 versions - Latest release: almost 6 years ago - 2 dependent repositories - 7 downloads last month - 0 stars on GitHub - 2 maintainers
Top 8.1% on pypi.org
1 version - Latest release: 10 months ago - 2 dependent repositories - 1 maintainer
edrnsite.content 0.0.0
EDRN Site Content1 version - Latest release: 10 months ago - 2 dependent repositories - 1 maintainer
jpl.edrn.ldap.sync 2.0.2
LDAP utilities for the Early Detection Research Network Directory4 versions - Latest release: about 1 month ago - 31 downloads last month - 0 stars on GitHub - 1 maintainer
trialtracker 0.1.7
Methods to extract and transform clinical trial data7 versions - Latest release: over 1 year ago - 34 downloads last month - 2 stars on GitHub - 1 maintainer
Top 9.3% on pypi.org
2 versions - Latest release: about 5 years ago - 2 dependent repositories - 309 downloads last month - 1 maintainer
sequenza-utils 3.0.0
Analysis of cancer sequencing samples, utilities for the sequenza R package2 versions - Latest release: about 5 years ago - 2 dependent repositories - 309 downloads last month - 1 maintainer
fings 1.7.1
Filters for Next Generation Sequencing4 versions - Latest release: about 3 years ago - 1 dependent repositories - 25 downloads last month - 9 stars on GitHub - 1 maintainer
eke.review 1.0.5
Review and Quality Control for the EDRN Knowledge Environment7 versions - Latest release: almost 6 years ago - 2 dependent repositories - 6 downloads last month - 0 stars on GitHub - 3 maintainers
eke.study 1.1.18
Study and protocol information for the EDRN Knowledge Environment30 versions - Latest release: almost 6 years ago - 2 dependent repositories - 22 downloads last month - 0 stars on GitHub - 3 maintainers
edrndmcc.appserver 1.2.5
EDRN DMCC Application Server policy10 versions - Latest release: over 7 years ago - 2 dependent repositories - 15 downloads last month - 0 stars on GitHub - 3 maintainers
heaserver-keychain 1.2.0
a service for managing laboratory credentials32 versions - Latest release: about 1 month ago - 1 dependent repositories - 406 downloads last month - 2 maintainers
telometer
a simple regular expression based method for measuring individual, chromosome-specific telomere l...7 versions - 792 downloads last month - 0 stars on GitHub - 1 maintainer
cg-gnn 0.3.2
Train a graph neural network on cell graphs.14 versions - Latest release: 5 months ago - 1 dependent package - 108 downloads last month - 4 stars on GitHub - 1 maintainer
edrnsite.portlets 1.1.9
Portlets for the EDRN Public Portal19 versions - Latest release: over 7 years ago - 2 dependent repositories - 6 downloads last month - 0 stars on GitHub - 3 maintainers
pvacseq-client 0.0.2
Web Front-End for pVAC-Seq3 versions - Latest release: about 7 years ago - 1 dependent package - 1 dependent repositories - 10 downloads last month - 0 stars on GitHub - 3 maintainers
kk-ontology-module 1.0.22
Ontology-based tool for cancer data analysis12 versions - Latest release: almost 2 years ago - 18 downloads last month - 1 maintainer
edrnsite.vanity 1.0.6
EDRN Site Vanity8 versions - Latest release: almost 6 years ago - 2 dependent repositories - 9 downloads last month - 0 stars on GitHub - 2 maintainers
pygeno 2.0.0
A python package for Personalized Genomics and Proteomics18 versions - Latest release: over 4 years ago - 1 dependent repositories - 70 downloads last month - 307 stars on GitHub - 2 maintainers
gdc-api-wrapper 0.2
A simple Python wrapper for the GDC Application Programming Interface2 versions - Latest release: over 3 years ago - 1 dependent repositories - 19 downloads last month - 5 stars on GitHub - 1 maintainer
crdch-model 1.1.5
CRDC-H model in LinkML, developed by the Center for Cancer Data Harmonization (CCDH). This Python...8 versions - Latest release: over 2 years ago - 1 dependent repositories - 34 downloads last month - 16 stars on GitHub - 2 maintainers
eke.committees 1.0.13
EDRN Committee list and membership information for the EDRN Knowledge Environment13 versions - Latest release: almost 6 years ago - 2 dependent repositories - 15 downloads last month - 0 stars on GitHub - 2 maintainers
heaserver-people 1.2.0
A microservice designed to provide CRUD operations for the Person HEA object type40 versions - Latest release: about 2 months ago - 1 dependent repositories - 326 downloads last month - 4,849 stars on GitHub - 2 maintainers
eke.biomarker 1.1.26
Biomarkers for the EDRN Knowledge Environment35 versions - Latest release: almost 6 years ago - 2 dependent repositories - 32 downloads last month - 0 stars on GitHub - 3 maintainers
edrn.labcas.ui 1.0.17
User interface for LabCAS, for EDRN22 versions - Latest release: over 5 years ago - 2 dependent repositories - 3 downloads last month - 1 stars on GitHub - 1 maintainer
cancer-api 0.2.4
A Python framework and API for handling and storing cancer genomics data and metadata.8 versions - Latest release: almost 9 years ago - 2 dependent repositories - 53 downloads last month - 4 stars on GitHub - 1 maintainer
miscan 1.1.1
MiScan: mutation-inferred screening model of cancer9 versions - Latest release: over 4 years ago - 1 dependent repositories - 36 downloads last month - 6 stars on GitHub - 1 maintainer
vcf-annotation-tools 3.0.0
A tool for annotating VCF files with expression and readcount data15 versions - Latest release: over 5 years ago - 1 dependent repositories - 57 downloads last month - 25 stars on GitHub - 1 maintainer
probabilistic2020 1.2.3
Probabilistic 20/2014 versions - Latest release: almost 5 years ago - 4 dependent repositories - 62 downloads last month - 8 stars on GitHub - 1 maintainer
mcl.infirmary 1.2.4
🏥 Infirmary: an API for Clinical Data for the Consortium for Molecular and Cellular Characterizat...13 versions - Latest release: over 1 year ago - 73 downloads last month - 1 stars on GitHub - 1 maintainer
edrnsite.policy 1.2.22
EDRN Public Portal Site Policy and Component Orchestration50 versions - Latest release: almost 6 years ago - 2 dependent repositories - 32 downloads last month - 1 stars on GitHub - 3 maintainers
heaserver-organizations 1.3.0
a service for managing organization information for research laboratories and other research groups46 versions - Latest release: about 2 months ago - 1 dependent repositories - 432 downloads last month - 4,849 stars on GitHub - 2 maintainers
clumps-ptm 0.0.6
CLUMPS-PTM driver gene discovery using 3D protein structure (Getz Lab).7 versions - Latest release: about 1 year ago - 29 downloads last month - 6 stars on GitHub - 1 maintainer
coderdata 0.1.28
A package to download, load, and process multiple benchmark multi-omic drug response datasets29 versions - Latest release: 27 days ago - 279 downloads last month - 10 stars on GitHub - 1 maintainer
eke.specimens 1.1.12
ERNE Specimen Management for the EDRN Knowledge Environment18 versions - Latest release: almost 6 years ago - 2 dependent repositories - 8 downloads last month - 0 stars on GitHub - 3 maintainers
remixt 0.5.23
ReMixT is a tool for joint inference of clone specific segment and breakpoint copy number9 versions - Latest release: almost 2 years ago - 1 dependent repositories - 26 downloads last month - 1 maintainer
scphylo-tools 0.0.4
a python toolkit for single-cell tumor phylogenetic analysis5 versions - Latest release: 11 months ago - 1 dependent repositories - 105 downloads last month - 5 stars on GitHub - 1 maintainer
edrnsite.funding 1.0.7
EDRN Funding Opportunities12 versions - Latest release: over 3 years ago - 2 dependent repositories - 13 downloads last month - 1 stars on GitHub - 3 maintainers
eke.publications 1.1.21
Publications Management for the EDRN Knowledge Environment28 versions - Latest release: almost 6 years ago - 2 dependent repositories - 26 downloads last month - 0 stars on GitHub - 3 maintainers
prostate-nomograms 0.0.9
Prediction tools based on existing prostate cancer nomograms.9 versions - Latest release: 12 months ago - 56 downloads last month - 1 stars on GitHub - 1 maintainer
vatools 5.1.1
A tool for annotating VCF files with expression and readcount data9 versions - Latest release: 4 months ago - 1 dependent repositories - 170 downloads last month - 24 stars on GitHub - 3 maintainers
lymph-model 1.2.0
Package for statistical modelling of lymphatic metastatic spread.19 versions - Latest release: 2 months ago - 1 dependent package - 2 dependent repositories - 66 downloads last month - 4 stars on GitHub - 1 maintainer
resim 0.1.1
chemoREsistance SIMulator1 version - Latest release: over 6 years ago - 1 dependent repositories - 14 downloads last month - 0 stars on GitHub - 1 maintainer
ngs-destruct 0.4.21
Destruct is a tool for joint prediction of rearrangement breakpoints from single or multiple tumo...3 versions - Latest release: 9 months ago - 1 dependent repositories - 19 downloads last month - 1 maintainer
trisicell 0.2.3
Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data26 versions - Latest release: 6 months ago - 1 dependent repositories - 814 downloads last month - 10 stars on GitHub - 1 maintainer
pvacseq 4.0.10
Personalized Variant Antigens by Cancer Sequencing (pVAC-Seq)20 versions - Latest release: almost 7 years ago - 2 dependent repositories - 52 downloads last month - 60 stars on GitHub - 2 maintainers
pybioportal 1.0.1
A Python package to easily retrieve data from cBioPortal2 versions - Latest release: 6 months ago - 32 downloads last month - 0 stars on GitHub - 1 maintainer
Top 2.2% on pypi.org
10 versions - Latest release: about 1 year ago - 22 dependent packages - 60 dependent repositories - 10.9 thousand downloads last month - 99 stars on GitHub - 1 maintainer
pyradiomics 3.1.0
Radiomics features library for python10 versions - Latest release: about 1 year ago - 22 dependent packages - 60 dependent repositories - 10.9 thousand downloads last month - 99 stars on GitHub - 1 maintainer
survivalpy 1.0.2
Kaplan-Meier Survival Plots and related statistics5 versions - Latest release: over 7 years ago - 1 dependent repositories - 147 downloads last month - 4 stars on GitHub - 1 maintainer
seq2neo 2.1.1
Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction5 versions - Latest release: over 1 year ago - 26 downloads last month - 20 stars on GitHub - 1 maintainer
mcl.sickbay 1.2.4
🤢 Sickbay: Clinical data model for the Consortium for Molecular and Cellular Characterization of ...20 versions - Latest release: over 1 year ago - 2 dependent packages - 125 downloads last month - 1 stars on GitHub - 1 maintainer
heaserver-trash-aws-s3 1.1.1
Deleted file management27 versions - Latest release: about 1 month ago - 197 downloads last month - 1 maintainer
sharesite.policy 1.0.2
SHARE Site Policy and Component Orchestration3 versions - Latest release: 10 months ago - 2 dependent repositories - 1 maintainer
agfusion 1.4.1
Python package to annotate and visualize gene fusions.25 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 212 downloads last month - 54 stars on GitHub - 1 maintainer
dicomhandler 0.0.1
dicomhandler is a package for wrapping many pydicom objects of the same patient, performing trans...1 version - Latest release: over 1 year ago - 37 downloads last month - 1 stars on GitHub - 1 maintainer
heaserver-accounts 1.1.3
Manages account information74 versions - Latest release: about 1 month ago - 1 dependent repositories - 654 downloads last month - 2 maintainers
edrnsite.collaborations 1.0.6
EDRN Collaborative Group Workspaces17 versions - Latest release: almost 6 years ago - 2 dependent repositories - 23 downloads last month - 2 maintainers
edrnsite.calendar 0.0.0
EDRN Site Calendar5 versions - Latest release: 10 months ago - 2 dependent repositories - 2 maintainers
heaserver-storage 1.0.0
a service manages storage information details19 versions - Latest release: 6 months ago - 1 dependent repositories - 131 downloads last month - 4,837 stars on GitHub - 2 maintainers
heaserver-volumes 1.1.0
The HEA volumes service30 versions - Latest release: 2 months ago - 1 dependent repositories - 146 downloads last month - 4,837 stars on GitHub - 2 maintainers
heaserver-buckets 1.1.4
a service for managing buckets and their data within the cloud58 versions - Latest release: about 1 month ago - 1 dependent repositories - 712 downloads last month - 4,837 stars on GitHub - 2 maintainers
heaserver-activity 1.1.0
A service for tracking activity in hea40 versions - Latest release: 2 months ago - 1 dependent repositories - 378 downloads last month - 4,837 stars on GitHub - 2 maintainers
neoepiscope 0.7.0
comprehensive neoepitope prediction software15 versions - Latest release: almost 2 years ago - 1 dependent repositories - 72 downloads last month - 26 stars on GitHub - 1 maintainer
methylpurify 2.0-20141116
Methylation subclone detection4 versions - Latest release: over 9 years ago - 1 dependent repositories - 22 downloads last month - 1 maintainer
sla-cli 0.2.1
A CLI tool designed to help source data for skin lesion research.7 versions - Latest release: about 3 years ago - 1 dependent repositories - 36 downloads last month - 1 stars on GitHub - 1 maintainer
jpl.edrn.ldap.utils 0.0.0
LDAP utilities for the EDRN Directory Service1 version - Latest release: over 1 year ago - 11 downloads last month - 0 stars on GitHub - 1 maintainer
Top 4.8% on pypi.org
122 versions - Latest release: 3 months ago - 3 dependent packages - 15 dependent repositories - 82.6 thousand downloads last month - 45 stars on GitHub - 1 maintainer
sevenbridges-python 2.11.0
SBG API python client bindings122 versions - Latest release: 3 months ago - 3 dependent packages - 15 dependent repositories - 82.6 thousand downloads last month - 45 stars on GitHub - 1 maintainer
mutagene 0.9.0
Mutational analysis with Python29 versions - Latest release: about 4 years ago - 1 dependent repositories - 161 downloads last month - 3 maintainers
rck 1.1.0
A tool for (R)econstruction of (C)ancer (K)aryotypes (both clone- and haplotype-specific)3 versions - Latest release: over 4 years ago - 1 dependent repositories - 29 downloads last month - 16 stars on GitHub - 1 maintainer
glycomesite.policy 1.0.0
GLYCANS site policy and component orchestration2 versions - Latest release: 10 months ago - 2 dependent repositories - 1 maintainer
edrn.nyuxls2erne 0.0.2
Convert New York University specimen tables to ERNE cache database format3 versions - Latest release: 10 months ago - 2 dependent repositories - 1 maintainer
Top 6.4% on pypi.org
9 versions - Latest release: 7 months ago - 8 dependent packages - 7 dependent repositories - 9.9 thousand downloads last month - 33 stars on GitHub - 2 maintainers
omnipath 1.0.8
Python client for the OmniPath web service9 versions - Latest release: 7 months ago - 8 dependent packages - 7 dependent repositories - 9.9 thousand downloads last month - 33 stars on GitHub - 2 maintainers
neoloop 0.4.3
Predict neo-loops induced by structural variations21 versions - Latest release: over 1 year ago - 1 dependent repositories - 220 downloads last month - 51 stars on GitHub - 1 maintainer
pasmopy 0.5.0
Patient-Specific Modeling in Python20 versions - Latest release: about 1 year ago - 1 dependent repositories - 210 downloads last month - 16 stars on GitHub - 1 maintainer
ctdna 0.1.2
ctdna computes the expected tumor detection size at a given sampling frequency.2 versions - Latest release: over 3 years ago - 1 dependent repositories - 35 downloads last month - 10 stars on GitHub - 1 maintainer
edrn.rdf 1.3.7
EDRN RDF Server28 versions - Latest release: over 5 years ago - 2 dependent repositories - 27 downloads last month - 0 stars on GitHub - 2 maintainers
jpl.edrn.dmcc.passwordrelay 0.0.3
Relay server for EDRN DMCC password verification4 versions - Latest release: over 1 year ago - 40 downloads last month - 0 stars on GitHub - 1 maintainer
eke.ecas 1.1.12
EDRN Catalog and Archive Service for the EDRN Knowledge Environment25 versions - Latest release: almost 6 years ago - 2 dependent repositories - 28 downloads last month - 0 stars on GitHub - 3 maintainers
eke.site 1.1.32
Site and staff information for the EDRN Knowledge Environment4 versions - Latest release: over 6 years ago - 2 dependent repositories - 15 downloads last month - 0 stars on GitHub - 1 maintainer
edrn.summarizer 0.0.7
EDRN Summarizer Server8 versions - Latest release: almost 7 years ago - 2 dependent repositories - 26 downloads last month - 0 stars on GitHub - 2 maintainers
dwilib 0.1.8.dev0
Research tools for MRI-based CAD of cancer10 versions - Latest release: over 5 years ago - 1 dependent repositories - 120 downloads last month - 8 stars on GitHub - 1 maintainer
portpy-photon 0.0.5 removed
First open-source radiation treatment planning system in Python5 versions - Latest release: about 1 year ago - 196 downloads last month - 26 stars on GitHub - 1 maintainer
tumorevo 0.0.1
Simulate and illustrate tumor evolution under different spatial constraints.1 version - Latest release: about 2 years ago - 1 dependent repositories - 17 downloads last month - 6 stars on GitHub - 1 maintainer
rheo 0.0.3
Rheo library2 versions - Latest release: about 3 years ago - 1 dependent repositories - 11 downloads last month - 1 maintainer
depmap-downloader 0.0.2 💰
Reproducibly/automatically download data from the DepMap.2 versions - Latest release: over 2 years ago - 1 dependent repositories - 24 downloads last month - 2 stars on GitHub - 1 maintainer
cancer 0.0.1
cancer1 version - Latest release: almost 5 years ago - 1 dependent repositories - 37 downloads last month - 0 stars on GitHub - 1 maintainer
dicomcrop 0.6 💰
Prepare bedside medical images for machine learning and image interpretation.6 versions - Latest release: over 1 year ago - 55 downloads last month - 12 stars on GitHub - 1 maintainer
macrodna 0.0.1
Accurate integration of single-cell DNA and RNA data for a deeper understanding of tumor heteroge...1 version - Latest release: about 2 years ago - 1 dependent repositories - 15 downloads last month - 1 stars on GitHub - 2 maintainers
edrn.auth 2.0.0
Wagtail-based authentication and authorization for the Early Detection Research Network1 version - Latest release: 4 months ago - 13 downloads last month - 0 stars on GitHub - 1 maintainer
morinkit 0.1.3
Python functions for cancer genomics3 versions - Latest release: over 7 years ago - 1 dependent repositories - 27 downloads last month - 0 stars on GitHub - 1 maintainer
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