Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "alignment" keyword

mtags 1.0.4
mTAGs - taxonomic profiling using degenerate consensus reference sequences of ribosomal RNA gene.
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 8 downloads last month - 6 stars on GitHub - 1 maintainer
Top 9.6% on pypi.org
igvpool 0.2.1
A service for using IGV to generate snapshots of a bam
1 version - Latest release: 10 months ago - 2 dependent repositories - 1 maintainer
dart-id 2.0.7
RT Alignment and Peptide ID Confidence Updating for LC-MS/MS Data
8 versions - Latest release: over 4 years ago - 1 dependent repositories - 40 downloads last month - 12 stars on GitHub - 1 maintainer
Top 3.1% on pypi.org
astroalign 2.5.1
Astrometric Alignment of Images
27 versions - Latest release: 8 months ago - 13 dependent packages - 21 dependent repositories - 2.75 thousand downloads last month - 133 stars on GitHub - 1 maintainer
subaligner 0.3.6
Automatically synchronize and translate subtitles, or create new ones by transcribing, using pre-...
29 versions - Latest release: 5 months ago - 1 dependent repositories - 747 downloads last month - 423 stars on GitHub - 1 maintainer
pdplus 1.5.0 💰
an new data analysis library add many feature,add duckdb sql functions.so calls: pandas plus
2 versions - Latest release: about 2 months ago - 6 downloads last month - 41,660 stars on GitHub - 1 maintainer
aepo
Annotation Efficient Preference Optimization
4 versions - 308 downloads last month - 1 stars on GitHub - 1 maintainer
pyprot 0.1-alpha
Python Proteins
1 version - Latest release: about 7 years ago - 1 dependent repositories - 5 downloads last month - 9 stars on GitHub - 1 maintainer
alicebob 6.6.6 removed 💰
This package is used for security research and demonstrations. It might contain dangerous code sn...
1 version - Latest release: almost 2 years ago - 35,782 stars on GitHub
pandassng 2.1.0 removed 💰
This package is used for security research and demonstrations. It might contain dangerous code sn...
1 version - Latest release: almost 2 years ago - 35,782 stars on GitHub
datawise 0.0.23 💰
AI Assistant for Python Data Analytics
11 versions - Latest release: 11 months ago - 19 downloads last month - 41,864 stars on GitHub - 1 maintainer
pydeas 1.0.2 💰
A simple db package
5 versions - Latest release: over 1 year ago - 12 downloads last month - 41,864 stars on GitHub - 1 maintainer
pandas-mpmkp 1.0.9 💰
Powerful data structures for data analysis, time series, and statistics
2 versions - Latest release: about 4 years ago - 1 dependent repositories - 22 downloads last month - 41,864 stars on GitHub - 1 maintainer
wisedata 1.0.13 💰
AI Assistant for Python Data Analytics
14 versions - Latest release: 11 months ago - 45 downloads last month - 41,864 stars on GitHub - 1 maintainer
eda-mds 2.1.8 💰
EBasic EDA functions implemented
9 versions - Latest release: 4 months ago - 50 downloads last month - 41,864 stars on GitHub - 1 maintainer
in-memory-table 1.0.0 💰
In memory indexed data
1 version - Latest release: over 1 year ago - 30 downloads last month - 41,864 stars on GitHub - 1 maintainer
Top 0.1% on pypi.org
pandas 2.2.2 💰
Powerful data structures for data analysis, time series, and statistics
109 versions - Latest release: about 2 months ago - 24,950 dependent packages - 310,870 dependent repositories - 226 million downloads last month - 40,616 stars on GitHub - 11 maintainers
privat24-business-python-sdk 0.0.1 💰
Privat24 for Business Python SDK
1 version - Latest release: over 4 years ago - 1 dependent repositories - 21 downloads last month - 41,864 stars on GitHub - 1 maintainer
pandas-xlwt 0.1.1 💰
Flexible and powerful data analysis / manipulation library for Python, providing labeled data str...
2 versions - Latest release: 11 months ago - 280 downloads last month - 41,864 stars on GitHub - 1 maintainer
scheduled-tasks-reader 0.1.1 💰
A program to various information of scheduled tasks.
2 versions - Latest release: over 4 years ago - 1 dependent repositories - 10 downloads last month - 41,864 stars on GitHub - 1 maintainer
nwalign 0.3.1
Needleman-Wunsch global sequence alignment
7 versions - Latest release: over 14 years ago - 8 dependent repositories - 46 downloads last month - 1 maintainer
tanuki.py 0.2.0
The easiest way to build scalable LLM-powered applications, which gets cheaper and faster over time.
6 versions - Latest release: 4 months ago - 1 dependent package - 124 downloads last month - 635 stars on GitHub - 1 maintainer
protparcon 3.1
ProtParCon - A framework for framework for processing molecular data and identifying parallel and...
4 versions - Latest release: about 5 years ago - 1 dependent repositories - 21 downloads last month - 4 stars on GitHub - 1 maintainer
feabas 2.1.0
A python library for stitching & alignment of connectome datasets using finite-element method.
9 versions - Latest release: 3 months ago - 35 downloads last month - 9 stars on GitHub - 1 maintainer
buddysuite 1.4.0
BuddySuite is a collection of command line utilities written in Python for working with biologica...
14 versions - Latest release: over 2 years ago - 1 dependent repositories - 69 downloads last month - 121 stars on GitHub - 1 maintainer
moexalgo 2.0.0 💰
Python lib for MOEX AlgoPack data
7 versions - Latest release: 27 days ago - 1 dependent package - 1.21 thousand downloads last month - 41,864 stars on GitHub - 1 maintainer
smallgenomeutilities 0.4.0
A collection of scripts that are useful for dealing with viral RNA NGS data.
6 versions - Latest release: 10 months ago - 1 dependent repositories - 43 downloads last month - 10 stars on GitHub - 3 maintainers
pyaliner 0.1.2
A library for comparing sequential data
3 versions - Latest release: over 2 years ago - 1 dependent repositories - 14 downloads last month - 0 stars on GitHub - 1 maintainer
Top 2.0% on pypi.org
dtw-python 1.4.2
A comprehensive implementation of dynamic time warping (DTW) algorithms.
32 versions - Latest release: 2 months ago - 21 dependent packages - 55 dependent repositories - 92.4 thousand downloads last month - 248 stars on GitHub - 1 maintainer
fluentdna 2.5.3
Visualization tool for bare fasta files. Supports whole genome alignment and multiple sequence a...
3 versions - Latest release: over 4 years ago - 1 dependent repositories - 18 downloads last month - 59 stars on GitHub - 1 maintainer
Top 1.6% on pypi.org
facexlib 0.3.0
Basic face library
16 versions - Latest release: about 1 year ago - 18 dependent packages - 780 dependent repositories - 913 thousand downloads last month - 759 stars on GitHub - 1 maintainer
onto-merger 0.1.0
OntoMerger is an ontology alignment library for deduplicating knowledge graph nodes,(i.e. ontolog...
1 version - Latest release: almost 2 years ago - 11 downloads last month - 90 stars on GitHub - 1 maintainer
seq-tools 1.0.10
Python tools for working with biological sequence data
5 versions - Latest release: over 6 years ago - 1 dependent repositories - 38 downloads last month - 1 stars on GitHub - 1 maintainer
geomapi 0.3.3
A standard library to manage geomatic data
34 versions - Latest release: 7 months ago - 1 dependent repositories - 226 downloads last month - 1 maintainer
disco-generation 1.1.1
A toolkit for distributional control of generative models
4 versions - Latest release: 10 months ago - 14 downloads last month - 67 stars on GitHub - 2 maintainers
filtersam 0.0.11
('Tools to filter sam o bam files by percent identity or percent of matched sequence',)
11 versions - Latest release: over 1 year ago - 1 dependent repositories - 42 downloads last month - 3 stars on GitHub - 1 maintainer
nwalign3 0.1.5
Needleman-Wunsch global sequence alignment
4 versions - Latest release: about 2 years ago - 2 dependent packages - 4 dependent repositories - 88 downloads last month - 9 stars on GitHub - 1 maintainer
Top 8.5% on pypi.org
pyspoa 0.2.1
Python bindings to spoa
14 versions - Latest release: 8 months ago - 3 dependent packages - 4 dependent repositories - 2.28 thousand downloads last month - 12 stars on GitHub - 2 maintainers
sil-thot 3.4.3
A toolkit for statistical word alignment and machine translation
12 versions - Latest release: 6 months ago - 1 dependent package - 2 dependent repositories - 722 downloads last month - 1 stars on GitHub - 1 maintainer
pafpy 0.2.0
A lightweight library for working with PAF (Pairwise mApping Format) files
5 versions - Latest release: over 3 years ago - 1 dependent repositories - 85 downloads last month - 31 stars on GitHub - 1 maintainer
visualqc 0.6.6
Assistive tool for the quality control of neuroimaging data
30 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 283 downloads last month - 72 stars on GitHub - 1 maintainer
deepslice 1.1.7
A package to align histology to 3D brain atlases
17 versions - Latest release: 4 months ago - 789 downloads last month - 70 stars on GitHub - 1 maintainer
senseppi 0.7.1
SENSE-PPI: Sequence-based EvolutioNary ScalE Protein-Protein Interaction prediction
17 versions - Latest release: about 1 month ago - 81 downloads last month - 1,273 stars on GitHub - 1 maintainer
enpc-aligner 1.0.5
Library of alignment of translated texts in differents languages
6 versions - Latest release: over 6 years ago - 1 dependent repositories - 20 downloads last month - 0 stars on GitHub - 1 maintainer
mutalyzer-algebra 1.5.1
A Boolean Algebra for Genetic Variants
20 versions - Latest release: 5 months ago - 2 dependent packages - 1 dependent repositories - 153 downloads last month - 10 stars on GitHub - 2 maintainers
sciencebeam-alignment 0.0.5
ScienceBeam Alignment
5 versions - Latest release: about 4 years ago - 3 dependent repositories - 37 downloads last month - 0 stars on GitHub - 2 maintainers
pxblat 1.2.1
A native python binding for blat suite
26 versions - Latest release: 14 days ago - 461 downloads last month - 10 stars on GitHub - 1 maintainer
pyali 0.1.1
A package for merging alignments
2 versions - Latest release: over 6 years ago - 1 dependent repositories - 13 downloads last month - 1 stars on GitHub - 1 maintainer
Top 9.8% on pypi.org
genomeworks-cuda-10-2 2021.2.2
NVIDIA genomics python libraries and utiliites
104 versions - Latest release: about 3 years ago - 1 dependent repositories - 566 downloads last month - 276 stars on GitHub - 1 maintainer
distilabel 1.0.3
Distilabel is an AI Feedback (AIF) framework for building datasets with and for LLMs.
18 versions - Latest release: about 1 month ago - 1.24 thousand downloads last month - 1 maintainer
textlinebreaker 0.2.0
A module to format strings. Length and alignment of lines can be specified. In the new version is...
4 versions - Latest release: about 1 month ago - 2 dependent packages - 76 downloads last month - 0 stars on GitHub - 1 maintainer
malign 0.3.2
Library for multiple asymmetric alignments on different alphabets
6 versions - Latest release: over 3 years ago - 1 dependent repositories - 46 downloads last month - 0 stars on GitHub - 1 maintainer
thingsvision 2.6.6
Extracting image features from state-of-the-art neural networks for Computer Vision made easy
210 versions - Latest release: 14 days ago - 1 dependent repositories - 3.34 thousand downloads last month - 141 stars on GitHub - 1 maintainer
dnalignment 0.0.6
dna sequence alignment
5 versions - Latest release: over 1 year ago - 66 downloads last month - 1 maintainer
elastic-tables 0.0.3
Format text using elastic tabstops
3 versions - Latest release: over 1 year ago - 36 downloads last month - 0 stars on GitHub - 1 maintainer
align-benchmark 0.1.1
Benchmark tests for dualtext alignment
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 30 downloads last month - 0 stars on GitHub - 1 maintainer
subsume 0.2.16 💰
Language-agnostic synchronization of subtitles with video via speech detection.
1 version - Latest release: over 4 years ago - 1 dependent repositories - 23 downloads last month - 6,513 stars on GitHub - 1 maintainer
srbpy 0.2.3
A Python/C++ Mixed Road Bridge Design Package
17 versions - Latest release: 4 months ago - 1 dependent repositories - 119 downloads last month - 3 stars on GitHub - 1 maintainer
phonechars 0.1
Extract phonological phylogenetic characters from aligned data
1 version - Latest release: over 1 year ago - 14 downloads last month - 1 stars on GitHub - 1 maintainer
alignqc 2.0.5
Python and R based tool for assessing the quality of alignments
2 versions - Latest release: over 6 years ago - 1 dependent repositories - 36 downloads last month - 45 stars on GitHub - 1 maintainer
genomeworks-cuda-11-0 2021.2.2
NVIDIA genomics python libraries and utiliites
98 versions - Latest release: about 3 years ago - 1 dependent repositories - 340 downloads last month - 276 stars on GitHub - 1 maintainer
palamedes 0.0.5
Palamedes: HGVS variants from a sequence alignment
3 versions - Latest release: about 1 month ago - 154 downloads last month - 3 stars on GitHub - 1 maintainer
Top 9.4% on pypi.org
protmapper 0.0.29
Map protein sites to human reference sequence.
27 versions - Latest release: 4 months ago - 1 dependent package - 8 dependent repositories - 2.41 thousand downloads last month - 4 stars on GitHub - 2 maintainers
decaf 2.0.0
Discrimination, Comparison, Alignment tool for small molecules
15 versions - Latest release: almost 8 years ago - 1 dependent repositories - 124 downloads last month - 1 maintainer
nmalign 0.0.3
forced alignment of lists of string by fuzzy string matching
3 versions - Latest release: over 1 year ago - 1 dependent repositories - 25 downloads last month - 6 stars on GitHub - 1 maintainer
textjustify 0.0.5
A text justify package
5 versions - Latest release: over 3 years ago - 1 dependent repositories - 33 downloads last month - 1 stars on GitHub - 1 maintainer
align1d 2.3.0
A small package for 1d aligment in cuda
5 versions - Latest release: almost 4 years ago - 1 dependent repositories - 64 downloads last month - 0 stars on GitHub - 1 maintainer
recan 0.1.5
recan: recombination analysis tool
5 versions - Latest release: over 1 year ago - 1 dependent repositories - 35 downloads last month - 9 stars on GitHub - 1 maintainer
pygas 1.0.4
python Guide aligned Sequences
2 versions - Latest release: almost 3 years ago - 1 dependent repositories - 12 downloads last month - 1 stars on GitHub - 1 maintainer
hadal 0.0.3
Tool for mining/alignment parallel texts
3 versions - Latest release: 7 months ago - 25 downloads last month - 2 stars on GitHub - 1 maintainer
alignmentrs 0.9.0
Quickly read and manipulate multiple sequence alignments in Python
17 versions - Latest release: over 5 years ago - 1 dependent repositories - 122 downloads last month - 1 stars on GitHub - 1 maintainer
viro-seq-utils 1.3.4
Utilities modules for sequences, alignments and phylogeny from Toulouse virology laboratory.
3 versions - Latest release: about 3 years ago - 1 dependent repositories - 29 downloads last month - 1 maintainer
Top 3.1% on pypi.org
aeneas 1.7.3.0
aeneas is a Python/C library and a set of tools to automagically synchronize audio and text (aka ...
15 versions - Latest release: about 7 years ago - 2 dependent packages - 18 dependent repositories - 3.21 thousand downloads last month - 2,388 stars on GitHub - 1 maintainer
Top 2.6% on pypi.org
rmsd 1.5.1
Calculate root-mean-square deviation (RMSD) between two sets of cartesian coordinates (XYZ or PDB...
9 versions - Latest release: over 1 year ago - 9 dependent packages - 25 dependent repositories - 2.01 thousand downloads last month - 463 stars on GitHub - 1 maintainer
py-goicp 0.0.4
GO-ICP compiled using Cython to use in python
4 versions - Latest release: about 4 years ago - 1 dependent repositories - 68 downloads last month - 113 stars on GitHub - 1 maintainer
minimappers2 0.1.3
A Python wrapper for minimap2-rs
4 versions - Latest release: over 1 year ago - 62 downloads last month - 51 stars on GitHub - 1 maintainer
mrivis 0.3.8
Intuitive high-level classes for visualization of medical imaging data
13 versions - Latest release: about 1 year ago - 2 dependent packages - 2 dependent repositories - 192 downloads last month - 22 stars on GitHub - 1 maintainer
microaligner 1.0.0
MicroAligner: image registration for large scale microscopy
1 version - Latest release: over 1 year ago - 1 dependent repositories - 23 downloads last month - 19 stars on GitHub - 1 maintainer
dmpfold 2.0
Protein structure prediction with the DMPfold2 method
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 41 downloads last month - 43 stars on GitHub - 1 maintainer
pyopal 0.6.0
Cython bindings and Python interface to Opal, a SIMD-accelerated pairwise aligner.
16 versions - Latest release: 22 days ago - 1 dependent package - 1 dependent repositories - 4.16 thousand downloads last month - 7 stars on GitHub - 1 maintainer
molalignlib 1.0.3
A library to align rigid molecules and clusters
12 versions - Latest release: 7 months ago - 20 downloads last month - 6 stars on GitHub - 1 maintainer
pytrimal 0.7.0
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming.
17 versions - Latest release: 10 months ago - 1 dependent repositories - 2.57 thousand downloads last month - 16 stars on GitHub - 1 maintainer
timething 0.0.27
Aligning text transcripts with their audio recordings.
29 versions - Latest release: almost 2 years ago - 1 dependent repositories - 462 downloads last month - 76 stars on GitHub - 1 maintainer
pyswrd 0.4.2
Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a heuristic m...
4 versions - Latest release: 4 months ago - 318 downloads last month - 3 stars on GitHub - 1 maintainer
scikit-fda-sim 0.7.1
Functional Data Analysis Python package.
1 version - Latest release: over 1 year ago - 24 downloads last month - 272 stars on GitHub - 1 maintainer
Top 2.7% on pypi.org
scikit-fda 0.9.1
Functional Data Analysis Python package.
15 versions - Latest release: 3 months ago - 9 dependent packages - 14 dependent repositories - 57.4 thousand downloads last month - 272 stars on GitHub - 1 maintainer
biastools 0.0.2
The toolkits to analyze reference bias of short DNA read alignment.
2 versions - Latest release: 8 months ago - 19 downloads last month - 9 stars on GitHub - 1 maintainer
pywfa 0.5.1
Align sequences using WFA2-lib
9 versions - Latest release: 12 months ago - 1 dependent package - 1 dependent repositories - 249 downloads last month - 28 stars on GitHub - 1 maintainer
Top 7.3% on pypi.org
stringdist 1.0.9
This package provides the stringdist module, which includes several functions for calculating str...
4 versions - Latest release: about 7 years ago - 2 dependent packages - 31 dependent repositories - 15.5 thousand downloads last month - 16 stars on GitHub - 1 maintainer
pypar 0.0.6
Python phoneme alignment representation
6 versions - Latest release: about 2 months ago - 3 dependent packages - 3 dependent repositories - 1.3 thousand downloads last month - 11 stars on GitHub - 1 maintainer
pyfoal 1.0.1
Python forced aligner
6 versions - Latest release: about 2 months ago - 1 dependent package - 1 dependent repositories - 200 downloads last month - 53 stars on GitHub - 1 maintainer
pyfamsa 0.4.0
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence ali...
8 versions - Latest release: 24 days ago - 3 dependent packages - 2.44 thousand downloads last month - 21 stars on GitHub - 1 maintainer
Top 4.7% on pypi.org
montreal-forced-aligner 3.0.7
Montreal Forced Aligner is a package for aligning speech corpora using Kaldi functionality.
93 versions - Latest release: 27 days ago - 2 dependent packages - 5 dependent repositories - 1.97 thousand downloads last month - 1,124 stars on GitHub - 1 maintainer
Top 9.9% on pypi.org
minineedle 3.1.5
Needleman-Wunsch and Smith-Waterman algorithms in python for any iterable objects.
15 versions - Latest release: about 1 year ago - 2 dependent packages - 2 dependent repositories - 715 downloads last month - 40 stars on GitHub - 1 maintainer
mappy-rs 0.0.7
A multithreaded python wrapper for rust bindings of minimap2.
10 versions - Latest release: 9 months ago - 2 dependent packages - 900 downloads last month - 5 stars on GitHub - 1 maintainer
Top 4.4% on pypi.org
edit-distance 1.0.6
Computing edit distance on arbitrary Python sequences.
12 versions - Latest release: over 1 year ago - 10 dependent packages - 21 dependent repositories - 52.8 thousand downloads last month - 100 stars on GitHub - 1 maintainer
dsbplot 0.1.3
A package for visualizing alignment variations in DNA-seq data from double-strand break (DSB) exp...
3 versions - Latest release: 5 months ago - 27 downloads last month - 1 stars on GitHub - 1 maintainer
kfa 0.2.0
Khmer Forced Aligner powered by Wav2Vec2CTC and Phonetisaurus
10 versions - Latest release: 3 months ago - 175 downloads last month - 1 stars on GitHub - 1 maintainer
datadreamer.dev 0.35.0
Prompt. Generate Synthetic Data. Train & Align Models.
34 versions - Latest release: 28 days ago - 1.05 thousand downloads last month - 648 stars on GitHub - 1 maintainer
Top 8.5% on pypi.org
monkey-patch.py 0.0.12
NOTE: This project has been moved [HERE](https://pypi.org/project/tanuki.py/)
8 versions - Latest release: 6 months ago - 2 dependent repositories - 70 downloads last month - 635 stars on GitHub - 1 maintainer