Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "sequencing" keyword
fastq-anonymous 1.0.1
Change the sequence of a fastq file to enable sharing of confidential information, for troublesho...2 versions - Latest release: over 6 years ago - 1 dependent repositories - 13 downloads last month - 0 stars on GitHub - 1 maintainer
Top 7.9% on pypi.org
70 versions - Latest release: 8 months ago - 1 dependent package - 13 dependent repositories - 1.06 thousand downloads last month - 11 stars on GitHub - 1 maintainer
nanoget 1.19.3
Functions to extract information from Oxford Nanopore sequencing data and alignments.70 versions - Latest release: 8 months ago - 1 dependent package - 13 dependent repositories - 1.06 thousand downloads last month - 11 stars on GitHub - 1 maintainer
Top 1.6% on pypi.org
60 versions - Latest release: 12 days ago - 16 dependent packages - 43 dependent repositories - 19.6 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-tool-util 24.0.2
Galaxy tool and tool dependency utilities60 versions - Latest release: 12 days ago - 16 dependent packages - 43 dependent repositories - 19.6 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 1.9% on pypi.org
36 versions - Latest release: 12 days ago - 23 dependent packages - 23 dependent repositories - 19.8 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-util 24.0.2
Galaxy generic utilities36 versions - Latest release: 12 days ago - 23 dependent packages - 23 dependent repositories - 19.8 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
nanoqc 0.9.4
Create fastQC-like plots for Oxford Nanopore sequencing data17 versions - Latest release: almost 4 years ago - 1 dependent repositories - 244 downloads last month - 81 stars on GitHub - 1 maintainer
nanocomp 1.23.1
Comparing runs of Oxford Nanopore sequencing data and alignments71 versions - Latest release: 11 months ago - 613 downloads last month - 88 stars on GitHub - 1 maintainer
nanostat 1.6.0
Calculate statistics for Oxford Nanopore sequencing data and alignments28 versions - Latest release: over 2 years ago - 2 dependent repositories - 313 downloads last month - 78 stars on GitHub - 1 maintainer
Top 9.3% on pypi.org
34 versions - Latest release: about 3 years ago - 2 dependent repositories - 512 downloads last month - 176 stars on GitHub - 1 maintainer
nanofilt 2.8.0
Filtering and trimming of Oxford Nanopore Sequencing data34 versions - Latest release: about 3 years ago - 2 dependent repositories - 512 downloads last month - 176 stars on GitHub - 1 maintainer
nanopack 1.1.0
Install all Oxford Nanopore scrips and modules for processing and analysis9 versions - Latest release: almost 4 years ago - 1 dependent repositories - 142 downloads last month - 189 stars on GitHub - 1 maintainer
Top 2.0% on pypi.org
36 versions - Latest release: 2 days ago - 7 dependent packages - 74 dependent repositories - 9.13 thousand downloads last month - 1,162 stars on GitHub - 1 maintainer
multiqc 1.22.1
Create aggregate bioinformatics analysis reports across many samples and tools36 versions - Latest release: 2 days ago - 7 dependent packages - 74 dependent repositories - 9.13 thousand downloads last month - 1,162 stars on GitHub - 1 maintainer
isobar 0.1.2
A Python library to express and manipulate musical patterns4 versions - Latest release: 12 months ago - 3 dependent repositories - 48 downloads last month - 354 stars on GitHub - 1 maintainer
seq-json-schema 1.0.20
Standardized JSON Schema for authoring multi-mission sequences13 versions - Latest release: 11 months ago - 135 downloads last month - 5 stars on GitHub - 2 maintainers
bedboss 0.2.1
Pipelines for genomic region file to produce bed files, and it's statistics6 versions - Latest release: about 1 month ago - 60 downloads last month - 1 stars on GitHub - 2 maintainers
pyseqlib 0.3.1
pySeqLib: A small python library to process sequencing data.4 versions - Latest release: over 3 years ago - 1 dependent repositories - 26 downloads last month - 2 stars on GitHub - 1 maintainer
geofetch 0.12.6
Downloads data and metadata from GEO and SRA and creates standard PEPs.22 versions - Latest release: 3 months ago - 1 dependent repositories - 444 downloads last month - 39 stars on GitHub - 3 maintainers
Top 3.1% on pypi.org
7 versions - Latest release: 9 months ago - 7 dependent packages - 11 dependent repositories - 3.03 thousand downloads last month - 34 stars on GitHub - 3 maintainers
airr 1.5.0
AIRR Community Data Representation Standard reference library for antibody and TCR sequencing data.7 versions - Latest release: 9 months ago - 7 dependent packages - 11 dependent repositories - 3.03 thousand downloads last month - 34 stars on GitHub - 3 maintainers
metav 1.0
rapid detection and classification of viruses in metagenomics sequencing.1 version - Latest release: 3 days ago - 0 stars on GitHub
aldy 4.3.1
A tool for allelic decomposition (haplotype reconstruction) and exact genotyping of highly polymo...19 versions - Latest release: over 1 year ago - 1 dependent repositories - 201 downloads last month - 51 stars on GitHub - 1 maintainer
Top 5.6% on pypi.org
59 versions - Latest release: 10 months ago - 6 dependent packages - 28 dependent repositories - 87.4 thousand downloads last month - 17 stars on GitHub - 2 maintainers
bioutils 0.5.8
miscellaneous simple bioinformatics utilities and lookup tables59 versions - Latest release: 10 months ago - 6 dependent packages - 28 dependent repositories - 87.4 thousand downloads last month - 17 stars on GitHub - 2 maintainers
scicast 0.8.27
scicast: Single Cell Iterative Clustering and Statistical Testing. A package for interrogating si...16 versions - Latest release: about 7 years ago - 1 dependent repositories - 376 downloads last month - 5 stars on GitHub - 1 maintainer
Top 9.9% on pypi.org
75 versions - Latest release: 11 days ago - 1 dependent repositories - 682 downloads last month - 125 stars on GitHub - 3 maintainers
pvactools 4.2.0
A cancer immunotherapy tools suite75 versions - Latest release: 11 days ago - 1 dependent repositories - 682 downloads last month - 125 stars on GitHub - 3 maintainers
Top 4.3% on pypi.org
48 versions - Latest release: 10 days ago - 1 dependent package - 4 dependent repositories - 9.42 thousand downloads last month - 218 stars on GitHub - 4 maintainers
nf-core 2.14.1
Helper tools for use with nf-core Nextflow pipelines.48 versions - Latest release: 10 days ago - 1 dependent package - 4 dependent repositories - 9.42 thousand downloads last month - 218 stars on GitHub - 4 maintainers
pipestat 0.9.1
A pipeline results reporter36 versions - Latest release: 25 days ago - 4 dependent packages - 3 dependent repositories - 25.9 thousand downloads last month - 4 stars on GitHub - 2 maintainers
multiqc-sgr 1.21.4
Create aggregate bioinformatics analysis reports across many samples and tools8 versions - Latest release: 4 days ago - 258 downloads last month - 0 stars on GitHub - 1 maintainer
km-walk 2.2.1
A software for RNA-seq investigation using k-mer decomposition3 versions - Latest release: 10 months ago - 1 dependent repositories - 20 downloads last month - 10 stars on GitHub - 1 maintainer
bedhost 0.2.0
A database server application that provides both a RESTful API and GUI for access to BED files an...4 versions - Latest release: 5 months ago - 65 downloads last month - 37,327 stars on GitHub - 2 maintainers
Top 7.8% on pypi.org
30 versions - Latest release: 4 months ago - 10 dependent packages - 47 dependent repositories - 38 thousand downloads last month - 7 stars on GitHub - 4 maintainers
yacman 0.9.3
A standardized configuration object for reference genome assemblies30 versions - Latest release: 4 months ago - 10 dependent packages - 47 dependent repositories - 38 thousand downloads last month - 7 stars on GitHub - 4 maintainers
streq 0.0.2
Basic utilities for working with nucleotide sequence strings.2 versions - Latest release: 12 months ago - 3 dependent packages - 1 dependent repositories - 18 downloads last month - 0 stars on GitHub - 1 maintainer
pipestat-reader 0.0.3
A generator of pipestat-based APIs2 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 20 downloads last month - 0 stars on GitHub - 2 maintainers
Top 4.7% on pypi.org
58 versions - Latest release: 4 months ago - 9 dependent packages - 25 dependent repositories - 14.9 thousand downloads last month - 35 stars on GitHub - 4 maintainers
peppy 0.40.1
A python-based project metadata manager for portable encapsulated projects58 versions - Latest release: 4 months ago - 9 dependent packages - 25 dependent repositories - 14.9 thousand downloads last month - 35 stars on GitHub - 4 maintainers
Top 6.9% on pypi.org
151 versions - Latest release: 7 months ago - 3 dependent repositories - 1.64 thousand downloads last month - 388 stars on GitHub - 1 maintainer
nanoplot 1.42.0
Plotting suite for Oxford Nanopore sequencing data and alignments151 versions - Latest release: 7 months ago - 3 dependent repositories - 1.64 thousand downloads last month - 388 stars on GitHub - 1 maintainer
Top 3.0% on pypi.org
73 versions - Latest release: over 1 year ago - 7 dependent packages - 34 dependent repositories - 37.5 thousand downloads last month - 231 stars on GitHub - 2 maintainers
hgvs 1.5.4
HGVS Parser, Formatter, Mapper, Validator73 versions - Latest release: over 1 year ago - 7 dependent packages - 34 dependent repositories - 37.5 thousand downloads last month - 231 stars on GitHub - 2 maintainers
geniml 0.3.0
Genomic interval toolkit3 versions - Latest release: about 1 month ago - 3 dependent packages - 388 downloads last month - 2 maintainers
Top 5.1% on pypi.org
18 versions - Latest release: 12 days ago - 5 dependent packages - 10 dependent repositories - 437 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-web-stack 24.0.2
Galaxy web stack abstraction18 versions - Latest release: 12 days ago - 5 dependent packages - 10 dependent repositories - 437 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-web-apps 24.0.2
Galaxy web apps15 versions - Latest release: 12 days ago - 2 dependent packages - 1 dependent repositories - 233 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 4.9% on pypi.org
24 versions - Latest release: 12 days ago - 9 dependent packages - 13 dependent repositories - 782 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-data 24.0.2
Galaxy datatype framework and datatypes24 versions - Latest release: 12 days ago - 9 dependent packages - 13 dependent repositories - 782 downloads last month - 1,315 stars on GitHub - 3 maintainers
bioino 0.0.2
Lightweight IO and conversion for bioinformatics file formats.4 versions - Latest release: 3 months ago - 1 dependent package - 139 downloads last month - 0 stars on GitHub - 1 maintainer
Top 4.6% on pypi.org
45 versions - Latest release: 3 months ago - 10 dependent packages - 21 dependent repositories - 63.8 thousand downloads last month - 38 stars on GitHub - 2 maintainers
biocommons.seqrepo 0.6.9
Non-redundant, compressed, journalled, file-based storage for biological sequences45 versions - Latest release: 3 months ago - 10 dependent packages - 21 dependent repositories - 63.8 thousand downloads last month - 38 stars on GitHub - 2 maintainers
genomicsqlite 0.9.4
Genomics Extension for SQLite21 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 130 downloads last month - 152 stars on GitHub - 1 maintainer
chiron 0.6.1
A deep neural network basecaller for nanopore sequencing.14 versions - Latest release: over 4 years ago - 109 downloads last month - 120 stars on GitHub - 1 maintainer
boss_runs 0.1.0
Dynamic, adaptive sampling during nanopore sequencing1 version - Latest release: 2 months ago - 27 downloads last month - 161 stars on GitHub - 1 maintainer
galaxy-tool-shed 24.0.2
Galaxy auth framework and implementations4 versions - Latest release: 12 days ago - 102 downloads last month - 1,315 stars on GitHub - 1 maintainer
galaxy-schema 24.0.2
Galaxy auth framework and implementations4 versions - Latest release: 12 days ago - 111 downloads last month - 1,315 stars on GitHub - 1 maintainer
seqrepo-rest-service 0.2.2
SeqRepo REST Service2 versions - Latest release: 6 months ago - 14 downloads last month - 4 stars on GitHub - 1 maintainer
xron 1.0.7
A deep neural network basecaller for nanopore sequencing.10 versions - Latest release: 7 months ago - 48 downloads last month - 11 stars on GitHub - 1 maintainer
nanorepeat 1.4.1
NanoRepeat: quantification of Short Tandem Repeats (STRs) from long-read sequencing data6 versions - Latest release: about 1 year ago - 51 downloads last month - 15 stars on GitHub - 1 maintainer
galaxy-tours 24.0.2
Galaxy tours backend framework15 versions - Latest release: 12 days ago - 1 dependent package - 362 downloads last month - 1,315 stars on GitHub - 1 maintainer
galaxy-navigation 24.0.2
Galaxy client DOM navigation framework15 versions - Latest release: 12 days ago - 2 dependent packages - 417 downloads last month - 1,315 stars on GitHub - 1 maintainer
ogilo-array 0.0.2
Automated construction of oligo library sequences for oligo array synthesis.2 versions - Latest release: 11 months ago - 16 downloads last month - 0 stars on GitHub - 1 maintainer
monte-barcode 0.0.2
Generating sets of random DNA sequences optimized for use in high-throughput sequencing.3 versions - Latest release: 12 months ago - 32 downloads last month - 0 stars on GitHub - 1 maintainer
genbiox 0.3.1
A Comprehensive Bioinformatics Package for Genome Analysis4 versions - Latest release: about 1 year ago - 20 downloads last month - 0 stars on GitHub - 1 maintainer
counhto 1.1.0
Python package for generating and demultiplexing hash tag oligo count matrices from cellranger ou...2 versions - Latest release: about 1 year ago - 13 downloads last month - 0 stars on GitHub - 1 maintainer
gisaid-download 0.3.0
Assisted download of selected gisaid metadata or EPI_SET creation2 versions - Latest release: about 1 year ago - 17 downloads last month - 0 stars on GitHub - 1 maintainer
ratio-genetic-py 0.3.0
Python bindings for the ratio-genetic Rust crate.2 versions - Latest release: over 1 year ago - 1 dependent package - 56 downloads last month - 1 maintainer
airrship 0.1.5
Simulation of B cell receptor repertoires6 versions - Latest release: about 1 year ago - 65 downloads last month - 6 stars on GitHub - 2 maintainers
s-rna-tools 0.0.3
Tools for handling Small RNA sequences.3 versions - Latest release: over 1 year ago - 11 downloads last month - 0 stars on GitHub - 1 maintainer
markmeld 0.3.0
Markmeld is a markup melder that combines structured yaml or markdown data into templated markdow...4 versions - Latest release: 6 months ago - 1 dependent repositories - 32 downloads last month - 2 maintainers
Top 5.4% on pypi.org
16 versions - Latest release: 12 days ago - 4 dependent packages - 6 dependent repositories - 499 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-files 24.0.2
Galaxy file source framework and default plugins16 versions - Latest release: 12 days ago - 4 dependent packages - 6 dependent repositories - 499 downloads last month - 1,315 stars on GitHub - 3 maintainers
Top 6.1% on pypi.org
16 versions - Latest release: 12 days ago - 3 dependent packages - 3 dependent repositories - 393 downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-config 24.0.2
Galaxy configuration16 versions - Latest release: 12 days ago - 3 dependent packages - 3 dependent repositories - 393 downloads last month - 1,315 stars on GitHub - 3 maintainers
mutwo.core 2.0.0
core library for event based framework mutwo19 versions - Latest release: about 1 month ago - 9 dependent packages - 11 dependent repositories - 165 downloads last month - 8 stars on GitHub - 1 maintainer
bartide 0.3.2
A Python package to extract, correct and analyze nucleotide barcodes from sequenced reads.6 versions - Latest release: over 1 year ago - 54 downloads last month - 0 stars on GitHub - 1 maintainer
relecov-tools 0.0.5
Tools for managing and resolution of buisciii services.3 versions - Latest release: over 1 year ago - 2 dependent repositories - 25 downloads last month - 4 stars on GitHub - 1 maintainer
clcr 1.0.0
Tool fo low coverage region correction1 version - Latest release: almost 2 years ago - 10 downloads last month - 3 stars on GitHub - 1 maintainer
pacbiodataprocessing 1.3.0
Tools to process PacBio sequencing data at molecule level24 versions - Latest release: over 1 year ago - 1 dependent repositories - 135 downloads last month - 0 stars on GitLab.com - 1 maintainer
yapyseq 1.1.0
Yet Another Python Sequencer2 versions - Latest release: almost 5 years ago - 1 dependent repositories - 18 downloads last month - 1 stars on GitHub - 1 maintainer
yanagiba 1.0.0
Filter short or low quality Oxford Nanopore reads which have been basecalled with Albacore.2 versions - Latest release: over 6 years ago - 1 dependent repositories - 17 downloads last month - 1 stars on GitHub - 1 maintainer
vcf-annotation-tools 3.0.0
A tool for annotating VCF files with expression and readcount data15 versions - Latest release: over 5 years ago - 1 dependent repositories - 95 downloads last month - 24 stars on GitHub - 1 maintainer
vatools 5.1.1
A tool for annotating VCF files with expression and readcount data9 versions - Latest release: 3 months ago - 1 dependent repositories - 233 downloads last month - 24 stars on GitHub - 3 maintainers
umitools 0.3.4
A toolset for handling sequencing data with unique molecular identifiers (UMIs)3 versions - Latest release: about 6 years ago - 2 dependent repositories - 40 downloads last month - 12 stars on GitHub - 1 maintainer
ulutil 0.1.1
Python utilities for Church lab work (mostly DNA sequencing)2 versions - Latest release: over 9 years ago - 2 dependent repositories - 27 downloads last month - 1 stars on GitHub - 1 maintainer
seq-pigeon 0.4.3
Pipeline tool for NGS data17 versions - Latest release: over 3 years ago - 1 dependent repositories - 90 downloads last month - 940 stars on GitHub - 1 maintainer
strnaming 1.2.0
STRNaming STR Sequence Nomenclature8 versions - Latest release: 4 months ago - 1 dependent package - 1 dependent repositories - 134 downloads last month - 1 stars on GitHub - 1 maintainer
ssub 0.2.1
Polls a GCP Pub/Sub topic for new SampleSheet notification messages in order to initiate bcl2fastq.3 versions - Latest release: about 4 years ago - 1 dependent repositories - 33 downloads last month - 1 maintainer
sruns-monitor 1.2.0
Looks for new Illumina sequencing runs and tars them up into GCP storage19 versions - Latest release: about 4 years ago - 1 dependent repositories - 151 downloads last month - 1 maintainer
snpmatch 4.0.0
A simple python library to identify the most likely strain given the SNPs for a sample14 versions - Latest release: over 4 years ago - 1 dependent repositories - 123 downloads last month - 9 stars on GitHub - 1 maintainer
snoopy 0.4.7
Browser based quality control tool to expedite reviewing predicted variants in next generation se...7 versions - Latest release: over 7 years ago - 3 dependent repositories - 58 downloads last month - 9 stars on GitHub - 1 maintainer
smallrnaseq 0.6.0 💰
Package for short RNA-seq analysis6 versions - Latest release: over 3 years ago - 1 dependent repositories - 34 downloads last month - 29 stars on GitHub - 1 maintainer
seroba 1.0.0
SEROBA: Serotyping for illumina reads3 versions - Latest release: over 6 years ago - 1 dependent repositories - 11 downloads last month - 15 stars on GitHub - 1 maintainer
sequman 0.0.2
functions for routine work with sequence data2 versions - Latest release: over 4 years ago - 1 dependent repositories - 12 downloads last month - 0 stars on GitHub - 1 maintainer
Top 9.3% on pypi.org
2 versions - Latest release: about 5 years ago - 2 dependent repositories - 405 downloads last month - 1 maintainer
sequenza-utils 3.0.0
Analysis of cancer sequencing samples, utilities for the sequenza R package2 versions - Latest release: about 5 years ago - 2 dependent repositories - 405 downloads last month - 1 maintainer
seqrepo 0.0.0
alias for the biocommons.seqrepo package1 version - Latest release: over 5 years ago - 1 dependent repositories - 88 downloads last month - 38 stars on GitHub - 1 maintainer
seqpipe 0.0.7
Sequencing pipeline5 versions - Latest release: over 6 years ago - 1 dependent repositories - 8 downloads last month - 1 stars on GitHub - 1 maintainer
seqm 0.1.0
Utilities for calculating sequence metrics.4 versions - Latest release: about 3 years ago - 1 dependent repositories - 51 downloads last month - 0 stars on GitHub - 1 maintainer
rnacounter 1.5.2
Estimate abundances of genomic features from read densities14 versions - Latest release: about 9 years ago - 2 dependent repositories - 25 downloads last month - 1 stars on GitHub - 2 maintainers
reviewer2 0.9.31
Starts a simple image server that lets you quickly flip through image files from a local director...24 versions - Latest release: almost 3 years ago - 1 dependent repositories - 127 downloads last month - 18 stars on GitHub - 1 maintainer
refgenieserver 0.7.0
This server provides both a web interface and a RESTful API. Users may explore and download archi...15 versions - Latest release: about 3 years ago - 1 dependent repositories - 43 downloads last month - 3 maintainers
readfish 2024.2.0
ONT adaptive sampling10 versions - Latest release: 10 days ago - 1 dependent repositories - 285 downloads last month - 161 stars on GitHub - 3 maintainers
q2-itsxpress 1.8.1
A QIIME2 plugin to trim ITS regions using ITSxpress17 versions - Latest release: 11 months ago - 1 dependent repositories - 102 downloads last month - 6 stars on GitHub - 2 maintainers
pysequen 0.1
Python library for concurrent processing of tasks with dependencies requiring sequencing1 version - Latest release: over 7 years ago - 1 dependent repositories - 12 downloads last month - 3 stars on GitHub - 1 maintainer
pyseq2500 0.64
Control an Illumina HiSeq 2500 System8 versions - Latest release: about 2 years ago - 1 dependent repositories - 56 downloads last month - 18 stars on GitHub - 1 maintainer
pyfq 0.0.6
Fastq manipulations and quality check6 versions - Latest release: over 5 years ago - 1 dependent repositories - 49 downloads last month - 1 maintainer
Top 6.8% on pypi.org
21 versions - Latest release: about 6 years ago - 42 dependent repositories - 646 downloads last month - 68 stars on GitHub - 1 maintainer
pyfastaq 3.17.0
Script to manipulate FASTA and FASTQ files, plus API for developers21 versions - Latest release: about 6 years ago - 42 dependent repositories - 646 downloads last month - 68 stars on GitHub - 1 maintainer
pvacseq-client 0.0.2
Web Front-End for pVAC-Seq3 versions - Latest release: about 7 years ago - 1 dependent package - 1 dependent repositories - 16 downloads last month - 0 stars on GitHub - 3 maintainers
pvacseq 4.0.10
Personalized Variant Antigens by Cancer Sequencing (pVAC-Seq)20 versions - Latest release: over 6 years ago - 2 dependent repositories - 80 downloads last month - 60 stars on GitHub - 2 maintainers
Top 3.6% on pypi.org
20 versions - Latest release: 4 months ago - 1 dependent package - 9 dependent repositories - 3.96 thousand downloads last month - 4 maintainers
presto 0.7.2
A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.20 versions - Latest release: 4 months ago - 1 dependent package - 9 dependent repositories - 3.96 thousand downloads last month - 4 maintainers
plastid 0.6.1
Tools for analysis of genomics & sequencing data12 versions - Latest release: about 2 years ago - 4 dependent repositories - 96 downloads last month - 35 stars on GitHub - 1 maintainer
picus 0.0.5
Pointed Interpretation of Clinical Variant Significance5 versions - Latest release: over 3 years ago - 1 dependent repositories - 32 downloads last month - 0 stars on GitHub - 1 maintainer
pararead 0.7.0
Parallel processing of sequencing reads4 versions - Latest release: almost 5 years ago - 1 dependent package - 3 dependent repositories - 117 downloads last month - 8 stars on GitHub - 4 maintainers
ont-tombo 1.5.1
Analysis of raw nanopore sequencing data.12 versions - Latest release: about 4 years ago - 1 dependent repositories - 145 downloads last month - 220 stars on GitHub - 1 maintainer
omicidx-builder 0.5.1
Tooling to build and deploy omicidx data and resources9 versions - Latest release: almost 4 years ago - 1 dependent repositories - 87 downloads last month - 3 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
113
genomics
65
ngs
53
workflow
39
pipeline
35
dna
33
science
30
hacktoberfest
28
workflow-engine
26
usegalaxy
26
biology
25
Galaxy
21
NGS
20
nanopore
19
DNA
12
python
12
variant
11
project
10
quality
9
next generation sequencing
9
metadata
8
genome
8
cancer
8
control
8
plotting
7
variants
7
next-generation-sequencing
7
bioinformatics-pipeline
7
rna-seq
7
quality control
7
learning
6
analysis
6
processing
6
genome-analysis
6
deep
6
research
6
pathogen
6
global-health
6
infectious-diseases
6
RNA-seq
5
variant-analysis
5
variation
5
generation
5
galaxy
5
genetics
5
next
5
prediction
5
clinical
4
quality-control
4
reporting
4
music
4
composition
4
rna
4
algorithmic-composition
4
midi
4
VCF
4
illumina
4
adaptive immunity
4
sequence
4
immunoglobulin
4
oxford-nanopore
4
exome
4
pathogenicity
4
synthetic
4
GUI
4
immunology
3
generative-art
3
high-throughput
3
csound
3
molecular-biology
3
alignment
3
antigens
3
neoantigens
3
vizualisation
3
fusion
3
seqera
3
pypi
3
multiqc
3
data-visualization
3
bioconda
3
filtering
3
python3
3
AIRR-seq
3
coverage
3
expression
3
metagenomics
3
VAF
3
notation
3
assembly
3
pipeline-submission-engine
3
methylation
3
allele
3
creative-coding
3
adaptive immune receptor repertoires
3
synthetic-biology
2
discovery
2
sanger
2
bioinformatics-tool
2
oligonucleotide
2
B cell repertoire analysis
2