Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "bioconda" keyword
pyrpipe 0.0.5
pyrpipe6 versions - Latest release: over 3 years ago - 1 dependent repositories - 29 downloads last month - 76 stars on GitHub - 1 maintainer
Top 2.0% on pypi.org
37 versions - Latest release: 16 days ago - 7 dependent packages - 74 dependent repositories - 12.3 thousand downloads last month - 1,162 stars on GitHub - 1 maintainer
multiqc 1.22.1
Create aggregate bioinformatics analysis reports across many samples and tools37 versions - Latest release: 16 days ago - 7 dependent packages - 74 dependent repositories - 12.3 thousand downloads last month - 1,162 stars on GitHub - 1 maintainer
ymp 0.2.1
Flexible multi-omic pipeline system6 versions - Latest release: almost 4 years ago - 1 dependent repositories - 38 downloads last month - 18 stars on GitHub - 1 maintainer
Top 7.4% on pypi.org
64 versions - Latest release: 4 months ago - 13 dependent packages - 3 dependent repositories - 5.04 thousand downloads last month - 122 stars on GitHub - 1 maintainer
pyrodigal 3.3.0
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes.64 versions - Latest release: 4 months ago - 13 dependent packages - 3 dependent repositories - 5.04 thousand downloads last month - 122 stars on GitHub - 1 maintainer
multiqc-msk 1.11.dev0
Create aggregate bioinformatics analysis reports across many samples and tools1 version - Latest release: about 3 years ago - 1 dependent repositories - 13 downloads last month - 1,162 stars on GitHub - 1 maintainer
multiqc-jupyterlab-helper 1.12.1.dev0
Create aggregate bioinformatics analysis reports across many samples and tools2 versions - Latest release: over 2 years ago - 1 dependent repositories - 13 downloads last month - 1,162 stars on GitHub - 1 maintainer
Top 4.4% on pypi.org
36 versions - Latest release: 12 months ago - 6 dependent packages - 5 dependent repositories - 11.5 thousand downloads last month - 363 stars on GitHub - 2 maintainers
genomepy 0.16.1
Genes and genomes at your fingertips36 versions - Latest release: 12 months ago - 6 dependent packages - 5 dependent repositories - 11.5 thousand downloads last month - 363 stars on GitHub - 2 maintainers
Top 6.7% on pypi.org
12 versions - Latest release: 27 days ago - 1 dependent package - 3 dependent repositories - 769 downloads last month - 511 stars on GitHub - 3 maintainers
sniffles 2.3.3
A fast structural variation caller for long-read sequencing data12 versions - Latest release: 27 days ago - 1 dependent package - 3 dependent repositories - 769 downloads last month - 511 stars on GitHub - 3 maintainers
run-dbcan 3.0.0
Standalone version of dbCAN annotation tool for automated CAZyme annotation14 versions - Latest release: over 2 years ago - 1 dependent repositories - 89 downloads last month - 127 stars on GitHub - 1 maintainer
deepaccess 0.1.3
A package for training and interpreting an ensemble of neural networks for chromatin accessibility4 versions - Latest release: almost 3 years ago - 1 dependent repositories - 39 downloads last month - 5 stars on GitHub - 1 maintainer
dbcan 3.0.6
Standalone version of dbCAN annotation tool for automated CAZyme annotation6 versions - Latest release: almost 2 years ago - 1 dependent repositories - 73 downloads last month - 107 stars on GitHub - 1 maintainer
protgraph 0.3.10
ProtGraph, a graph generator for proteins.19 versions - Latest release: 4 months ago - 1 dependent repositories - 138 downloads last month - 9 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
9
python
6
pypi
4
vizualisation
3
seqera
3
reporting
3
quality-control
3
multiqc
3
data-visualization
3
analysis
3
quality control
3
next generation sequencing
3
NGS
3
sequencing
3
biology
3
genome
2
rna-seq
2
conda
2
anaconda
2
database
2
dbcan
2
docker
2
webserver
2
gene
2
genomics
2
ngm-lr
1
nanopore
1
ucsc
1
ncbi
1
ensembl
1
assembly
1
bioinformatics-analysis
1
GENCODE
1
NCBI
1
UCSC
1
annotation
1
pacbio
1
structural-variation
1
structural-variations
1
deep-learning
1
epigenomics
1
interpretation
1
pypi-package
1
fasta
1
graph
1
peptide
1
protein
1
python3
1
uniprot
1
bioinformatics-pipeline
1
ncbi-sra
1
rna-seq-pipeline
1
rna-seq-workflows
1
pipeline
1
workflow
1
automation
1
rnaseq
1
metagenomics
1
snakemake
1
conda-environment
1
extensible
1
hacktoberfest
1
hacktoberfest-accepted
1
hacktoberfest2022
1
multi-omics
1
omics-pipeline
1
ymp
1
orf
1
prodigal
1
cython-wrapper
1
gene-finding
1
metagenomes
1
orf-finder
1
python-interface
1
python-library
1
simd
1
Ensembl
1