Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "gene" keyword
enrichrpy 0.1.0
A tool for gene set enrichment (GSEA) plots and analysis in Python. Built on top of Enrichr API.2 versions - Latest release: almost 2 years ago - 1 dependent package - 34 downloads last month - 0 stars on GitHub - 1 maintainer
camoco 0.6.4
Library for Co-Analysis of Molecular Componenets.14 versions - Latest release: over 4 years ago - 3 dependent repositories - 38 downloads last month - 40 stars on GitHub - 1 maintainer
rnaseeker 1.0.0
RNA-seq scripts and libraries1 version - Latest release: 4 months ago - 33 downloads last month - 1 stars on GitHub - 1 maintainer
pyrodigal-gv 0.3.1
A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.5 versions - Latest release: 6 months ago - 3 dependent packages - 1 dependent repositories - 182 downloads last month - 7 stars on GitHub - 2 maintainers
Top 1.6% on pypi.org
11 versions - Latest release: 7 months ago - 6 dependent packages - 74 dependent repositories - 81.1 thousand downloads last month - 14 stars on GitHub - 2 maintainers
biothings-client 0.3.1
Python Client for BioThings API services.11 versions - Latest release: 7 months ago - 6 dependent packages - 74 dependent repositories - 81.1 thousand downloads last month - 14 stars on GitHub - 2 maintainers
genecoder 1.1.1
code analysis for genes8 versions - Latest release: over 9 years ago - 2 dependent repositories - 13 downloads last month - 1 stars on GitHub - 1 maintainer
Top 5.9% on pypi.org
4 versions - Latest release: over 3 years ago - 6 dependent packages - 10 dependent repositories - 2.65 thousand downloads last month - 45 stars on GitHub - 3 maintainers
arboreto 0.1.6
Scalable gene regulatory network inference using tree-based ensemble regressors4 versions - Latest release: over 3 years ago - 6 dependent packages - 10 dependent repositories - 2.65 thousand downloads last month - 45 stars on GitHub - 3 maintainers
Top 9.5% on pypi.org
1 version - Latest release: 10 months ago - 3 dependent repositories - 1 maintainer
impute 0.0.1
Gene imputation tools for founder populations.1 version - Latest release: 10 months ago - 3 dependent repositories - 1 maintainer
genedataset 0.6.2
Store and access gene expression datasets and gene definitions.18 versions - Latest release: over 5 years ago - 2 dependent repositories - 32 downloads last month - 2 stars on GitHub - 1 maintainer
gait-gm 21.7.22
"Modeling Metabolites as a function of gene expression"3 versions - Latest release: almost 3 years ago - 1 dependent repositories - 18 downloads last month - 0 stars on GitHub - 1 maintainer
tfd 0.3.0
Random modules in a personal namespace.5 versions - Latest release: over 11 years ago - 2 dependent repositories - 25 downloads last month - 1 stars on GitHub - 1 maintainer
pheatmap 1.0.1
pheatmap for Python3 versions - Latest release: over 1 year ago - 1 dependent repositories - 52 downloads last month - 2 stars on GitHub - 1 maintainer
pygtftk 1.6.2
The Python GTF toolkit (pygtftk) package: easy handling of GTF files26 versions - Latest release: about 2 years ago - 1 dependent repositories - 88 downloads last month - 42 stars on GitHub - 1 maintainer
pygcap
Python package for probe-based gene cluster finding in large microbial genome database4 versions - 396 downloads last month - 1 maintainer
stringx 0.7.5
STRING DB API Client11 versions - Latest release: 2 months ago - 128 downloads last month - 1 stars on GitHub - 1 maintainer
gene2word 2.0.0a1
Geneset translation library2 versions - Latest release: about 3 years ago - 1 dependent repositories - 7 downloads last month - 0 stars on GitHub - 1 maintainer
pygeno 2.0.0
A python package for Personalized Genomics and Proteomics18 versions - Latest release: over 4 years ago - 1 dependent repositories - 70 downloads last month - 307 stars on GitHub - 2 maintainers
apafea 0.0.9
visualizes genes functional enrichment9 versions - Latest release: about 2 years ago - 21 downloads last month - 1 maintainer
pinetree 0.4.0
stochastic simulation of gene expression with site-specific translation rates8 versions - Latest release: over 1 year ago - 1 dependent repositories - 37 downloads last month - 9 stars on GitHub - 3 maintainers
arv 0.9.2
A fast 23andMe raw genome file parser11 versions - Latest release: about 7 years ago - 139 downloads last month - 114 stars on GitHub - 1 maintainer
vcf-annotation-tools 3.0.0
A tool for annotating VCF files with expression and readcount data15 versions - Latest release: over 5 years ago - 1 dependent repositories - 57 downloads last month - 25 stars on GitHub - 1 maintainer
ppanini 0.7.3
PPANINI: Prioritization and Prediction of functional Annotations for Novel and Important genes vi...7 versions - Latest release: over 6 years ago - 1 dependent repositories - 19 downloads last month - 1 maintainer
gtf_to_genes 1.08
Fast GTF parser14 versions - Latest release: 10 months ago - 3 dependent repositories - 41 downloads last month - 1 maintainer
biophony 1.0.0
Random generation of genetic files2 versions - Latest release: 24 days ago - 1 maintainer
Top 4.6% on pypi.org
40 versions - Latest release: about 1 year ago - 6 dependent packages - 6 dependent repositories - 7.69 thousand downloads last month - 209 stars on GitHub - 1 maintainer
dnachisel 3.2.11
Optimize DNA sequences under constraints.40 versions - Latest release: about 1 year ago - 6 dependent packages - 6 dependent repositories - 7.69 thousand downloads last month - 209 stars on GitHub - 1 maintainer
vatools 5.1.1
A tool for annotating VCF files with expression and readcount data9 versions - Latest release: 4 months ago - 1 dependent repositories - 170 downloads last month - 24 stars on GitHub - 3 maintainers
Top 3.9% on pypi.org
12 versions - Latest release: about 3 years ago - 33 dependent packages - 131 dependent repositories - 82.7 thousand downloads last month - 78 stars on GitHub - 2 maintainers
mygene 3.2.2
Python Client for MyGene.Info services.12 versions - Latest release: about 3 years ago - 33 dependent packages - 131 dependent repositories - 82.7 thousand downloads last month - 78 stars on GitHub - 2 maintainers
eclair 1.18
Robust inference of cell lineages from gene expression data via consensus clustering and the aggr...7 versions - Latest release: about 8 years ago - 1 dependent repositories - 37 downloads last month - 1 stars on GitHub - 1 maintainer
goparser 1.1.4
GOparser - A Python Framework for Working with Gene Ontology (GO) Terms and Annotations9 versions - Latest release: over 8 years ago - 3 dependent repositories - 41 downloads last month - 1 stars on GitHub - 1 maintainer
gene 0.0.1
gene1 version - Latest release: almost 5 years ago - 1 dependent repositories - 31 downloads last month - 0 stars on GitHub - 1 maintainer
screen-assembly 1.2.8
screens for presence of genes of interest (GOI) in bacterial assemblies10 versions - Latest release: almost 3 years ago - 1 dependent repositories - 37 downloads last month - 6 stars on GitHub - 1 maintainer
cache_ensembl 1.01
Fast Ensembl data cache2 versions - Latest release: almost 14 years ago - 2 dependent repositories - 20 downloads last month - 1 maintainer
rots-py 1.4.0
ROTS gene ranking implementation in Python10 versions - Latest release: 8 months ago - 95 downloads last month - 1 stars on GitHub - 1 maintainer
mygene-api 1.0
A simple API wrapper for the MyGene.info API.1 version - Latest release: almost 9 years ago - 2 dependent repositories - 9 downloads last month - 1 maintainer
Top 7.4% on pypi.org
64 versions - Latest release: 5 months ago - 13 dependent packages - 3 dependent repositories - 5.04 thousand downloads last month - 122 stars on GitHub - 1 maintainer
pyrodigal 3.3.0
Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes.64 versions - Latest release: 5 months ago - 13 dependent packages - 3 dependent repositories - 5.04 thousand downloads last month - 122 stars on GitHub - 1 maintainer
read-overlap 1.0.0
screens for presence of genes of interest (GOI) in bacterial assemblies1 version - Latest release: about 5 years ago - 1 dependent repositories - 9 downloads last month - 6 stars on GitHub - 1 maintainer
Top 4.4% on pypi.org
36 versions - Latest release: 12 months ago - 6 dependent packages - 5 dependent repositories - 11.5 thousand downloads last month - 363 stars on GitHub - 2 maintainers
genomepy 0.16.1
Genes and genomes at your fingertips36 versions - Latest release: 12 months ago - 6 dependent packages - 5 dependent repositories - 11.5 thousand downloads last month - 363 stars on GitHub - 2 maintainers
pygep 0.2.1.beta-r100
Gene Expression Programming for Python6 versions - Latest release: 10 months ago - 1 dependent repositories - 7 downloads last month - 1 maintainer
deep-lincs 0.0.3
A framework for deep learning with LINCS L1000 Data3 versions - Latest release: almost 5 years ago - 1 dependent repositories - 15 downloads last month - 8 stars on GitHub - 1 maintainer
gopca 0.2.5
GO-PCA: An Unsupervised Method to Explore Gene Expression Data Using Prior Knowledge6 versions - Latest release: over 6 years ago - 2 dependent repositories - 48 downloads last month - 14 stars on GitHub - 1 maintainer
gnb 1.0.0
A tool to build gene co-expression network using Methylation Microarrays1 version - Latest release: almost 3 years ago - 1 dependent repositories - 35 downloads last month - 1 maintainer
singlecell 0.1.0
SingleCell: A Python Package for Processing Single-Cell RNA-Seq Data.1 version - Latest release: 10 months ago - 1 dependent repositories - 10 stars on GitHub - 1 maintainer
digitalcellsorter 1.3.7
Toolkit for analysis and identification of cell types from heterogeneous single cell RNA-seq data36 versions - Latest release: over 3 years ago - 1 dependent repositories - 169 downloads last month - 22 stars on GitHub - 1 maintainer
gene-map 0.4.4
Map gene ids using UniProt.14 versions - Latest release: over 4 years ago - 1 dependent repositories - 64 downloads last month - 5 stars on GitHub - 1 maintainer
Top 6.4% on pypi.org
9 versions - Latest release: 7 months ago - 8 dependent packages - 7 dependent repositories - 9.9 thousand downloads last month - 33 stars on GitHub - 2 maintainers
omnipath 1.0.8
Python client for the OmniPath web service9 versions - Latest release: 7 months ago - 8 dependent packages - 7 dependent repositories - 9.9 thousand downloads last month - 33 stars on GitHub - 2 maintainers
dbretina 2.2.11
DBRetina Python Package21 versions - Latest release: 11 months ago - 1 dependent repositories - 131 downloads last month - 1 stars on GitHub - 1 maintainer
gene-thesaurus 2.0.0
GeneThesaurus is a Python package that translates gene aliases and old gene symbols to the curren...4 versions - Latest release: 7 months ago - 25 downloads last month - 0 stars on GitHub - 1 maintainer
tspecscores 0.0.2
test2 versions - Latest release: over 2 years ago - 1 dependent repositories - 25 downloads last month - 3 stars on GitHub - 1 maintainer
combined-gene-caller 1.0.4
Combined gene caller for MGnify pipeline, to combine predictions from FragGeneScan and Prodigal2 versions - Latest release: 10 months ago - 25 downloads last month - 0 stars on GitHub - 2 maintainers
Top 9.9% on pypi.org
1 version - Latest release: over 1 year ago - 1 dependent package - 681 downloads last month - 117 stars on GitHub - 1 maintainer
elucidatacmappy 3.3.4
Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute...1 version - Latest release: over 1 year ago - 1 dependent package - 681 downloads last month - 117 stars on GitHub - 1 maintainer
Top 8.8% on pypi.org
36 versions - Latest release: over 5 years ago - 2 dependent packages - 1 dependent repositories - 1.82 thousand downloads last month - 117 stars on GitHub - 2 maintainers
cmappy 4.0.1
Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute...36 versions - Latest release: over 5 years ago - 2 dependent packages - 1 dependent repositories - 1.82 thousand downloads last month - 117 stars on GitHub - 2 maintainers
degex 0.0.24
Detect Gene Expression in Single-CEll data24 versions - Latest release: 12 months ago - 1 dependent package - 63 downloads last month - 0 stars on GitHub - 1 maintainer
patientmatcher 3.1.2
A python and MongoDB-based Matchmaker Exchange server24 versions - Latest release: over 2 years ago - 1 dependent repositories - 129 downloads last month - 11 stars on GitHub - 3 maintainers
gsea-api 0.3.4 💰
Pandas API for Gene Set Enrichment Analysis in Python (GSEApy, cudaGSEA, GSEA)13 versions - Latest release: about 4 years ago - 1 dependent repositories - 82 downloads last month - 14 stars on GitHub - 1 maintainer
gaframework 0.0.3
Simple to use genetic algorithm library.3 versions - Latest release: about 4 years ago - 1 dependent repositories - 30 downloads last month - 1 maintainer
cimr 0.1.7
continuous integration of association summary statistics for network analysis2 versions - Latest release: about 4 years ago - 1 dependent repositories - 32 downloads last month - 1 stars on GitHub - 1 maintainer
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