Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "synthetic-biology" keyword
dasi 0.2.1
Automated DNA assembly planner for Python19 versions - Latest release: over 3 years ago - 2 dependent repositories - 130 downloads last month - 10 stars on GitHub - 1 maintainer
terrarium-capp 0.1.6
Adaptive Computer Aided Process Planner7 versions - Latest release: over 4 years ago - 1 dependent repositories - 45 downloads last month - 11 stars on GitHub - 1 maintainer
symbac 0.4.0
A package for generating synthetic images of bactera in phase contrast or fluorescence. Used for ...13 versions - Latest release: 3 months ago - 1 dependent repositories - 192 downloads last month - 17 stars on GitHub - 1 maintainer
mooda-dna 0.11.0
A Multi-Objective algorithm for DNA Design and Assembly9 versions - Latest release: over 2 years ago - 1 dependent repositories - 67 downloads last month - 6 stars on GitHub - 1 maintainer
nrpcalc 1.6.3
Non-Repetitive Parts Calculator - Automated design and discovery of non-repetitive genetic parts ...2 versions - Latest release: almost 3 years ago - 1 dependent repositories - 9 downloads last month - 6 stars on GitHub - 2 maintainers
icebreaker 0.2.1
Python API for the JBEI ICE sample manager.2 versions - Latest release: over 4 years ago - 2 dependent repositories - 22 downloads last month - 6 stars on GitHub - 1 maintainer
crazydoc 0.1.6
Read genetic sequences from stylized docx files6 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 3 thousand downloads last month - 31 stars on GitHub - 1 maintainer
bandwitch 0.3.4
Enzyme selection for DNA verification and identification11 versions - Latest release: almost 2 years ago - 1 dependent repositories - 50 downloads last month - 16 stars on GitHub - 1 maintainer
ogilo-array 0.0.2
Automated construction of oligo library sequences for oligo array synthesis.2 versions - Latest release: 12 months ago - 11 downloads last month - 0 stars on GitHub - 1 maintainer
ypkpathway 3.0.1
Simulation and documentation of metabolic pathway assemblies using the Yeast Pathway Kit.25 versions - Latest release: almost 5 years ago - 2 dependent repositories - 221 downloads last month - 2 stars on GitHub - 1 maintainer
gb2fasta 1.0.0
Python CLI to convert .gb file to .fasta.1 version - Latest release: over 2 years ago - 1 dependent repositories - 9 downloads last month - 0 stars on GitHub - 1 maintainer
dnada 0.1.2
An application for creating customized synthetic biology automation instructions1 version - Latest release: 10 months ago - 10 downloads last month - 8 stars on GitHub - 1 maintainer
Top 4.6% on pypi.org
40 versions - Latest release: about 1 year ago - 6 dependent packages - 6 dependent repositories - 7.69 thousand downloads last month - 209 stars on GitHub - 1 maintainer
dnachisel 3.2.11
Optimize DNA sequences under constraints.40 versions - Latest release: about 1 year ago - 6 dependent packages - 6 dependent repositories - 7.69 thousand downloads last month - 209 stars on GitHub - 1 maintainer
primavera 0.1.11
Primer selection + data analysis for DNA assembly validation11 versions - Latest release: about 2 years ago - 1 dependent repositories - 50 downloads last month - 33 stars on GitHub - 1 maintainer
zymp 0.1.3
Design compact sequences with many enzyme restriction sites.4 versions - Latest release: about 2 years ago - 1 dependent repositories - 56 downloads last month - 9 stars on GitHub - 1 maintainer
genedom 0.1.11
Genetic parts standardization11 versions - Latest release: about 2 years ago - 1 dependent repositories - 31 downloads last month - 14 stars on GitHub - 1 maintainer
geneblocks 1.2.3
Library to compare DNA sequences (diff, common blocks, etc.)18 versions - Latest release: about 2 years ago - 2 dependent packages - 1 dependent repositories - 232 downloads last month - 36 stars on GitHub - 1 maintainer
kappagate 0.1.3
Predict valid-clone-rates in Golden Gate DNA assemblies4 versions - Latest release: over 4 years ago - 1 dependent repositories - 15 downloads last month - 9 stars on GitHub - 1 maintainer
dnacauldron 2.0.9
Cloning simulation for DNA assembly (Golden Gate, Gibson...)26 versions - Latest release: 11 months ago - 1 dependent repositories - 279 downloads last month - 49 stars on GitHub - 1 maintainer
dnaweaver 0.3.8
Make ordering and assembly plans for DNA sequences9 versions - Latest release: almost 2 years ago - 1 dependent repositories - 45 downloads last month - 28 stars on GitHub - 1 maintainer
retropath2-wrapper 1.1.0
'python wrapper to run retropath2.0 knime workflow'11 versions - Latest release: over 3 years ago - 1 dependent repositories - 41 downloads last month - 7 stars on GitHub - 1 maintainer
physiofit 3.3.6
Calculate extracellular fluxes from metabolite concentrations and biomass data30 versions - Latest release: 2 months ago - 3 dependent repositories - 199 downloads last month - 6 stars on GitHub - 2 maintainers
toymaker 0.2.5
This library is designed to facilitate research of stochasticity effects in genetic circuits6 versions - Latest release: 11 months ago - 27 downloads last month - 2 stars on GitHub - 1 maintainer
tatapov 0.2.2
Provides DNA overhang misannealing data (Potapov 2018).8 versions - Latest release: about 2 years ago - 1 dependent repositories - 203 downloads last month - 12 stars on GitHub - 1 maintainer
sequenticon 0.1.5
Generate human-friendly icons from DNA sequences5 versions - Latest release: about 2 years ago - 1 dependent package - 1 dependent repositories - 300 downloads last month - 37 stars on GitHub - 1 maintainer
rp2paths 1.5.1
'retropath2.0 to pathways'2 versions - Latest release: over 3 years ago - 1 dependent repositories - 10 downloads last month - 14 stars on GitHub - 1 maintainer
goldenhinges 0.2.3
DNA overhang design for Golden Gate etc.10 versions - Latest release: about 2 years ago - 1 dependent repositories - 69 downloads last month - 11 stars on GitHub - 1 maintainer
ostir 1.1.2
Open Source Transcription Initiation Rates11 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 95 downloads last month - 9 stars on GitHub - 1 maintainer
caravagene 0.1.8
🎨 Python library to plot multi-part genetic constructs9 versions - Latest release: 11 months ago - 1 dependent repositories - 80 downloads last month - 24 stars on GitHub - 1 maintainer
genome_collector 0.1.6
Easily download and store taxID genomes from NCBI7 versions - Latest release: over 4 years ago - 29 downloads last month - 21 stars on GitHub - 1 maintainer
deepbgc 0.1.31
DeepBGC - Biosynthetic Gene Cluster detection and classification34 versions - Latest release: 7 months ago - 1 dependent repositories - 423 downloads last month - 116 stars on GitHub - 1 maintainer
rsnapsim 0.0.58
A package for mRNA sequence translation stochastic simulations48 versions - Latest release: almost 2 years ago - 1 dependent repositories - 408 downloads last month - 562 stars on GitHub - 1 maintainer
Top 3.5% on pypi.org
30 versions - Latest release: 7 months ago - 9 dependent packages - 19 dependent repositories - 2.41 thousand downloads last month - 546 stars on GitHub - 1 maintainer
dna-features-viewer 3.1.3
Plot features from DNA sequences (e.g. Genbank) with Python30 versions - Latest release: 7 months ago - 9 dependent packages - 19 dependent repositories - 2.41 thousand downloads last month - 546 stars on GitHub - 1 maintainer
teemi 0.3.4
A Python package for constructing microbial strains9 versions - Latest release: 5 months ago - 1 dependent repositories - 57 downloads last month - 32 stars on GitHub - 1 maintainer
taskpacker 0.1.1
🤖 Python biolab automation library: parsers, reports generators, picklists simulators, and more2 versions - Latest release: over 6 years ago - 1 dependent repositories - 15 downloads last month - 38 stars on GitHub - 1 maintainer
bandwagon 0.3.2
Simulate DNA band patterns for gel migration experiments9 versions - Latest release: about 2 years ago - 1 dependent repositories - 103 downloads last month - 19 stars on GitHub - 1 maintainer
ostir-50 1.0.6 removed
Open Source Transcription Initiation Rates1 version - Latest release: almost 2 years ago - 6 stars on GitHub
ostir50 1.0.6 removed
Open Source Transcription Initiation Rates1 version - Latest release: almost 2 years ago - 6 stars on GitHub
Related Keywords
DNA
13
dna-assembly
11
biology
11
bioinformatics
10
molecular-biology
8
synthetic
8
assembly
7
synbio
6
sequence-design
6
design
4
python
4
bioengineering
4
dna
4
lab-automation
3
sequence
3
rna-structure
3
systems-biology
3
dna-sequences
2
biotechnology
2
Simulation
2
optimization
2
dna-visualization
2
genbank
2
visualization
2
golden
2
gate
2
Matplotlib
2
genetic
2
sequencing
2
automation
2
dna-sequence
2
metabolic-engineering
2
golden-gate
2
biological-simulations
2
cad
2
science
2
annealing
1
lims
1
hash
1
mismatch
1
potapov
1
dna-design
1
identicon
1
barcoding
1
sequenticon
1
aquarium
1
exometabolome
1
extracellular-fluxes
1
fluxomics
1
isotope-labeling-experiments
1
mass-spectrometry
1
metabolic-flux-analysis
1
metabolic-models
1
metabolism
1
nuclear-magnetic-resonance
1
Stochastic process
1
Genetic circuits
1
Synthetic Biology
1
Systems Biology
1
gillespie-algorithm
1
simulation
1
stochastic-processes
1
overhang
1
bidirectional-lstm
1
biosynthetic-gene-clusters
1
deep-learning
1
deepbgc
1
natural-products
1
Sequence
1
Feature
1
Genbank
1
Biopython
1
teemi
1
bio-cad
1
ht-strain-construction
1
machine-learning-guided-engineering-of-biology
1
parser
1
Gel
1
Agarose
1
agarose-gel
1
plotting
1
sequence-editing
1
overhangs
1
constraint-programming
1
SBOL
1
plot
1
NCBI
1
genomes
1
TaxID
1
BLAST
1
Bowtie
1
blast
1
bowtie
1
ncbi
1
taxid
1
biosynthetic gene clusters
1
bgc detection
1
deep learning
1
pfam2vec
1
vertex
1