Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "DNA" keyword

deepac 0.14.1
Predicting pathogenic potentials of novel DNA with reverse-complement neural networks.
19 versions - Latest release: over 1 year ago - 8 dependent repositories - 97 downloads last month - 2 stars on GitLab.com - 1 maintainer
dnacrypt 1.0.2
A simple code for encryption based on the genetic code of DNA
1 version - Latest release: almost 2 years ago - 8 downloads last month - 0 stars on GitHub - 1 maintainer
yanagiba 1.0.0
Filter short or low quality Oxford Nanopore reads which have been basecalled with Albacore.
2 versions - Latest release: over 6 years ago - 1 dependent repositories - 49 downloads last month - 1 stars on GitHub - 1 maintainer
dnacryptkey 1.0.2
A good code for encryption based on the genetic code of DNA
1 version - Latest release: almost 2 years ago - 8 downloads last month - 0 stars on GitHub - 1 maintainer
openoligo 0.1.7
An open-source platform for programmatically interacting with and managing Nucleic acid sequences...
8 versions - Latest release: 11 months ago - 22 downloads last month - 1 stars on GitHub - 1 maintainer
fealden 0.3.2
Tool for generating optimized nucleic acid biosensor sequences.
1 version - Latest release: about 1 year ago - 12 downloads last month - 2 stars on GitHub - 1 maintainer
mitywgs 1.0.0 💰
A sensitive Mitochondrial variant detection pipeline from WGS data
11 versions - Latest release: 5 months ago - 1 dependent repositories - 62 downloads last month - 35 stars on GitHub - 3 maintainers
freebarcodes 3.1.0
FREE Divergence Error-Correcting DNA Barcodes
7 versions - Latest release: over 1 year ago - 1 dependent repositories - 24 downloads last month - 21 stars on GitHub - 1 maintainer
bionorm 0.7.11
normalize, verify, and select genomic data
20 versions - Latest release: about 3 years ago - 108 downloads last month - 0 stars on GitHub - 2 maintainers
binderspace 1.0.2
a library for finding the space for binding sequences
4 versions - Latest release: about 1 year ago - 1 dependent repositories - 18 downloads last month - 0 stars on GitHub - 1 maintainer
reoptimize 0.1.0a2
A tool to optimize reaction conditions for restriction enzyme digests of DNA
2 versions - Latest release: almost 7 years ago - 1 dependent repositories - 12 downloads last month - 1 stars on GitHub - 1 maintainer
hmobster 0.0.44
VAF clustering for multiple karyotypes
40 versions - Latest release: over 1 year ago - 1 dependent repositories - 321 downloads last month - 1 stars on GitHub - 1 maintainer
codfish 0.0.1
Complementary Oligonucleotide Design for Fluorescence In Situ Hybridization
1 version - Latest release: about 6 years ago - 9 downloads last month - 1 maintainer
ab1-organizer 1.0.0
Extract and distribute ab1 files from Sanger DNA sequencing to folders of their respective owners.
1 version - Latest release: almost 4 years ago - 1 dependent repositories - 28 downloads last month - 0 stars on GitHub - 1 maintainer
multimolecule 0.0.3
Neural Networks for RNA, DNA, and Protein.
5 versions - Latest release: 26 days ago - 132 downloads last month - 0 stars on GitHub - 1 maintainer
bpforms 0.0.16
Unambiguous representation of modified DNA, RNA, and proteins
12 versions - Latest release: almost 4 years ago - 7 dependent repositories - 85 downloads last month - 6 stars on GitHub - 2 maintainers
codonopt 0.22
A package for codon optimisation
4 versions - Latest release: over 6 years ago - 27 downloads last month - 0 stars on GitHub - 1 maintainer
kman 0.0.1
K-mer management tools
1 version - Latest release: about 6 years ago - 1 dependent repositories - 4 downloads last month - 0 stars on GitHub - 1 maintainer
pyjellyfish 1.2.0
Python interface to the Jellfish DNA k-mer counter
5 versions - Latest release: 10 months ago - 2 dependent packages - 1 dependent repositories - 31 downloads last month - 3 stars on GitHub - 1 maintainer
taurenmd 0.11.2
A command-line interface for analysis routines in Molecular Dynamics data.
40 versions - Latest release: almost 2 years ago - 1 dependent repositories - 260 downloads last month - 8 stars on GitHub - 1 maintainer
fqutils 0.0.0.dev6
fastq file utils in python
5 versions - Latest release: over 6 years ago - 1 dependent repositories - 8 downloads last month - 1 maintainer
alfpy 1.0.6
Alignment-free package to compare DNA/RNA/protein sequences (bioinformatics).
4 versions - Latest release: about 6 years ago - 2 dependent packages - 1 dependent repositories - 98 downloads last month - 21 stars on GitHub - 1 maintainer
pyentrezid 1.5.8 💰
Converts UniProt, HGNC, and Ensembl Transcript Ids to Entrez Gene Id. Also, converts acce...
25 versions - Latest release: about 8 years ago - 1 dependent repositories - 119 downloads last month - 42 stars on GitHub - 1 maintainer
fish-prode 1.1.0
A FISH probe design web interface.
3 versions - Latest release: almost 6 years ago - 1 dependent repositories - 27 downloads last month - 8 stars on GitHub - 1 maintainer
cfutils 0.0.0.dev60
Chromatogram File Utils
25 versions - Latest release: 2 months ago - 2 dependent repositories - 168 downloads last month - 20 stars on GitHub - 1 maintainer
nsdpy 1.0.0
Automatize the download of DNA sequences from NCBI, sort them according to their taxonomy and fil...
23 versions - Latest release: 8 months ago - 1 dependent repositories - 62 downloads last month - 3 stars on GitHub - 1 maintainer
pacbiodataprocessing 1.3.0
Tools to process PacBio sequencing data at molecule level
24 versions - Latest release: over 1 year ago - 1 dependent repositories - 135 downloads last month - 0 stars on GitLab.com - 1 maintainer
gpseqc 2.3.6
GPSeq-based centrality estimation.
4 versions - Latest release: almost 5 years ago - 1 dependent repositories - 8 downloads last month - 2 stars on GitHub - 1 maintainer
radiantkit 0.0.1
Radial Image Analysis Toolkit
1 version - Latest release: over 5 years ago - 1 dependent repositories - 8 downloads last month - 2 stars on GitHub - 1 maintainer
ifpd2q 1.0.4
An iFISH probe design pipeline (II)
5 versions - Latest release: 3 months ago - 2 dependent packages - 155 downloads last month - 0 stars on GitHub - 1 maintainer
fdstools 2.0.4
Forensic DNA Sequencing Tools
14 versions - Latest release: over 1 year ago - 2 dependent repositories - 610 downloads last month - 5 stars on GitHub - 1 maintainer
bandwitch 0.3.4
Enzyme selection for DNA verification and identification
11 versions - Latest release: almost 2 years ago - 1 dependent repositories - 50 downloads last month - 16 stars on GitHub - 1 maintainer
ifpd 2.1.1
An iFISH probe design pipeline, with web interface included.
21 versions - Latest release: over 2 years ago - 1 dependent repositories - 72 downloads last month - 8 stars on GitHub - 1 maintainer
arv 0.9.2
A fast 23andMe raw genome file parser
11 versions - Latest release: about 7 years ago - 139 downloads last month - 114 stars on GitHub - 1 maintainer
deepaclive 0.3.2
Detecting novel pathogens from NGS reads in real-time during a sequencing run.
5 versions - Latest release: over 3 years ago - 1 dependent repositories - 20 downloads last month - 1 stars on GitLab.com - 1 maintainer
freediv10xcellbcs 0.0a1
FREE divergence-based decoding of 10X cell barcodes
1 version - Latest release: over 1 year ago - 7 downloads last month - 0 stars on GitHub - 1 maintainer
strnaming 1.2.0
STRNaming STR Sequence Nomenclature
8 versions - Latest release: 5 months ago - 1 dependent package - 1 dependent repositories - 179 downloads last month - 1 stars on GitHub - 1 maintainer
rnajena-sugar
Simple containers for RNA and DNA sequence analysis
2 versions - 0 stars on GitHub
dnassembly 0.1.10
Digest and assemble DNA
8 versions - Latest release: over 3 years ago - 1 dependent repositories - 19 downloads last month - 1 stars on GitHub - 1 maintainer
Top 4.6% on pypi.org
dnachisel 3.2.11
Optimize DNA sequences under constraints.
40 versions - Latest release: about 1 year ago - 6 dependent packages - 6 dependent repositories - 7.69 thousand downloads last month - 209 stars on GitHub - 1 maintainer
primavera 0.1.11
Primer selection + data analysis for DNA assembly validation
11 versions - Latest release: about 2 years ago - 1 dependent repositories - 50 downloads last month - 33 stars on GitHub - 1 maintainer
plasmid-design 0.0.4
Automated plasmid design from speadsheet specification
4 versions - Latest release: 11 months ago - 19 downloads last month - 1 stars on GitHub - 1 maintainer
zymp 0.1.3
Design compact sequences with many enzyme restriction sites.
4 versions - Latest release: about 2 years ago - 1 dependent repositories - 56 downloads last month - 9 stars on GitHub - 1 maintainer
ifpd2 1.0.1a1
An iFISH probe design pipeline (II)
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 13 downloads last month - 2 stars on GitHub - 1 maintainer
genedom 0.1.11
Genetic parts standardization
11 versions - Latest release: about 2 years ago - 1 dependent repositories - 31 downloads last month - 14 stars on GitHub - 1 maintainer
jasper-vh 1.0.3
Just a simple virus's hosts predictor
6 versions - Latest release: over 3 years ago - 1 dependent repositories - 27 downloads last month - 4 stars on GitHub - 1 maintainer
geneblocks 1.2.3
Library to compare DNA sequences (diff, common blocks, etc.)
18 versions - Latest release: about 2 years ago - 2 dependent packages - 1 dependent repositories - 232 downloads last month - 36 stars on GitHub - 1 maintainer
kappagate 0.1.3
Predict valid-clone-rates in Golden Gate DNA assemblies
4 versions - Latest release: over 4 years ago - 1 dependent repositories - 15 downloads last month - 9 stars on GitHub - 1 maintainer
dnacauldron 2.0.9
Cloning simulation for DNA assembly (Golden Gate, Gibson...)
26 versions - Latest release: 11 months ago - 1 dependent repositories - 279 downloads last month - 49 stars on GitHub - 1 maintainer
deepacstrain 0.2.1
Predicting pathogenic potentials of novel strains of known bacterial species.
3 versions - Latest release: over 3 years ago - 1 dependent repositories - 25 downloads last month - 2 stars on GitLab.com - 1 maintainer
deepacvir 0.2.2
Detecting novel human viruses from DNA reads with reverse-complement neural networks.
4 versions - Latest release: over 3 years ago - 1 dependent repositories - 29 downloads last month - 2 stars on GitLab.com - 1 maintainer
dnaweaver 0.3.8
Make ordering and assembly plans for DNA sequences
9 versions - Latest release: almost 2 years ago - 1 dependent repositories - 45 downloads last month - 28 stars on GitHub - 1 maintainer
farseernmr 2.0.0.dev0
A software suite for automatic treatment, analysis and plotting of large and multivariable datase...
1 version - Latest release: over 4 years ago - 1 dependent repositories - 14 downloads last month - 10 stars on GitHub - 1 maintainer
kmer-map 0.0.2
A package for visualizing kmers.
2 versions - Latest release: 3 months ago - 28 downloads last month - 0 stars on GitHub - 1 maintainer
snapgene-utils 0.7.0
Convert Snapgene *.dna files dict/json/biopython.
9 versions - Latest release: 6 months ago - 35 downloads last month - 1 maintainer
admix 1.2
An admixture analysis tool that supports raw data from 23andme, AncestryDNA, etc.
6 versions - Latest release: over 5 years ago - 1 dependent repositories - 82 downloads last month - 43 stars on GitHub - 1 maintainer
Top 10.0% on pypi.org
viennarna 2.6.4
A library for the prediction and comparison of RNA secondary structures.
7 versions - Latest release: 9 months ago - 7 dependent packages - 3 dependent repositories - 2.9 thousand downloads last month - 270 stars on GitHub - 2 maintainers
bio-corgi 0.4.0
Classifier for ORganelle Genomes Inter alia
2 versions - Latest release: 11 months ago - 23 downloads last month - 0 stars on GitHub - 1 maintainer
sequenticon 0.1.5
Generate human-friendly icons from DNA sequences
5 versions - Latest release: about 2 years ago - 1 dependent package - 1 dependent repositories - 300 downloads last month - 37 stars on GitHub - 1 maintainer
d2r 0.5.0
A new statistic for efficient detection of repetitive sequences
1 version - Latest release: over 5 years ago - 1 dependent repositories - 19 downloads last month - 3 stars on GitHub - 1 maintainer
oligo-melting 2.0.2
A Python3 package for melting temperature calculation of oligonucleotides hybridization and secon...
8 versions - Latest release: over 3 years ago - 1 dependent repositories - 73 downloads last month - 10 stars on GitHub - 1 maintainer
promotercalculator 1.2.2
Salis Lab's promoter-calculator (Barrick Lab Fork)
4 versions - Latest release: 6 months ago - 1 dependent package - 1 dependent repositories - 47 downloads last month - 1 stars on GitHub - 1 maintainer
vica 0.1.5
find highly divergent DNA and RNA viruses in microbiomes
3 versions - Latest release: about 6 years ago - 1 dependent repositories - 38 downloads last month - 5 stars on GitHub - 1 maintainer
Top 6.4% on pypi.org
omnipath 1.0.8
Python client for the OmniPath web service
9 versions - Latest release: 7 months ago - 8 dependent packages - 7 dependent repositories - 9.9 thousand downloads last month - 33 stars on GitHub - 2 maintainers
saboteurs 0.3.3
Identify agents impairing success across experiments.
5 versions - Latest release: about 2 years ago - 1 dependent repositories - 35 downloads last month - 4 stars on GitHub - 1 maintainer
variant2pubmed 0.0.1
Search for human genetic variants in pubmed using text-mining techniques
1 version - Latest release: 10 months ago - 2 dependent repositories - 1 maintainer
pyphylogenomics 0.3.12
Tools to work in phylogenomics, from NSG group http://nymphalidae.utu.fi
14 versions - Latest release: over 10 years ago - 1 dependent repositories - 69 downloads last month - 10 stars on GitHub - 1 maintainer
repdna 1.1.4
a Python package to generate various modes of feature vectors for DNA sequences by incorporating ...
2 versions - Latest release: about 9 years ago - 1 dependent repositories - 19 downloads last month - 12 stars on GitHub - 1 maintainer
bioprot 0.2.0
A package for DNA, RNA and protein sequence manipulation
1 version - Latest release: 24 days ago - 0 stars on GitHub
cryptkeeper 0.1
Package for predicting functional components of DNA sequences
1 version - Latest release: 6 months ago - 18 downloads last month - 1 stars on GitHub - 1 maintainer
goldenhinges 0.2.3
DNA overhang design for Golden Gate etc.
10 versions - Latest release: about 2 years ago - 1 dependent repositories - 69 downloads last month - 11 stars on GitHub - 1 maintainer
snapgene-reader 0.1.20
Convert Snapgene *.dna files dict/json/biopython.
9 versions - Latest release: about 2 years ago - 3 dependent packages - 1 dependent repositories - 8.59 thousand downloads last month - 148 stars on GitHub - 1 maintainer
Top 8.3% on pypi.org
python-codon-tables 0.1.12
Codon Usage Tables for Python, from kazusa.or.jp
15 versions - Latest release: about 2 years ago - 3 dependent packages - 2 dependent repositories - 7.43 thousand downloads last month - 34 stars on GitHub - 1 maintainer
caravagene 0.1.8
🎨 Python library to plot multi-part genetic constructs
9 versions - Latest release: 11 months ago - 1 dependent repositories - 80 downloads last month - 24 stars on GitHub - 1 maintainer
palindrome-tree 1.3.1
Gradient boosted decision tree palindrome predictor, used to locate regions for further investiga...
19 versions - Latest release: about 2 years ago - 1 dependent repositories - 208 downloads last month - 1 stars on GitHub - 1 maintainer
easy-dna 0.3.4
Methods for DNA sequence reading, writing and editing.
7 versions - Latest release: over 1 year ago - 1 dependent repositories - 2.97 thousand downloads last month - 6 stars on GitHub - 1 maintainer
Top 3.5% on pypi.org
dna-features-viewer 3.1.3
Plot features from DNA sequences (e.g. Genbank) with Python
30 versions - Latest release: 7 months ago - 9 dependent packages - 19 dependent repositories - 2.41 thousand downloads last month - 546 stars on GitHub - 1 maintainer
dnarecords 0.2.7
Genomics data ML ready
17 versions - Latest release: almost 2 years ago - 1 dependent repositories - 7 downloads last month - 2 stars on GitHub - 1 maintainer
proofreader-polymerase 0.1.0
DNA proofreading
1 version - Latest release: over 2 years ago - 1 dependent repositories - 12 downloads last month - 1 stars on GitHub - 1 maintainer
immuno-probs 0.2.1 removed
Create IGoR models and calculate the generation probability of V(D)J and CDR3 sequences.
2 versions - Latest release: over 4 years ago - 1 dependent repositories - 4 downloads last month - 7 stars on GitHub - 1 maintainer
gelutils 0.6.1
Annotate and convert GEL images (PAGE, agarose gels, etc.) acquired from e.g. Typhoon scanners, G...
4 versions - Latest release: almost 8 years ago - 2 dependent repositories - 21 downloads last month - 8 stars on GitHub - 1 maintainer
dnamd 2.1.0
To analyze fluctuations in DNA or RNA structures in molecular dynamics trajectories
13 versions - Latest release: over 5 years ago - 1 dependent repositories - 120 downloads last month - 17 stars on GitHub - 1 maintainer
dna-analyser-ibp 3.6.0
DNA analyser API wrapper tool for Jupiter notebooks.
33 versions - Latest release: 9 months ago - 1 dependent repositories - 287 downloads last month - 1 stars on GitHub - 1 maintainer
metagene 0.0.0.dev50
Metagene Profiling Analysis and Visualization
42 versions - Latest release: 29 days ago - 252 downloads last month - 1 maintainer
vcfy 0.0.9
Generate VCF file with random variants from reference genome
9 versions - Latest release: about 3 years ago - 1 dependent repositories - 109 downloads last month - 6 stars on GitHub - 1 maintainer
gene-connector-cli 0.6.5
The Gene-Connector command line interface
8 versions - Latest release: 6 months ago - 50 downloads last month - 1 stars on GitHub - 1 maintainer
staged-image-recovery 0.0.1 removed
Recover images from proximity information.
1 version - Latest release: over 1 year ago - 1 maintainer
Related Keywords
biology 24 bioinformatics 20 RNA 20 sequence 13 synthetic-biology 13 sequencing 12 synthetic 11 dna 11 python 10 dna-assembly 10 design 8 oligonucleotide 8 assembly 7 genome 7 cell 6 sequence-design 6 protein 6 FISH 5 fluorescence 5 hybridization 5 prediction 5 learning 5 hacktoberfest 5 NGS 4 genomics 4 deep 4 pathogenicity 4 gene 3 Biology 3 Protein 3 fish 3 deep learning 3 ifish-probe 3 genetics 3 bio 3 molecular-biology 3 synbio 3 probe 2 ifish 2 gui 2 palindrome 2 inverted-repeats 2 Genbank 2 web-interface 2 gpseq 2 microscopy 2 bioimaging 2 Genomics 2 NCBI 2 Taxonomy 2 UniProt 2 HGNC 2 Ensembl 2 alignment-free 2 ngs 2 Biochemistry 2 Molecular Biology 2 Structural Biology 2 Proteins 2 lab-automation 2 virus 2 part 2 genetic 2 bacteria 2 codon-optimization 2 constraints 2 optimization 2 codon 2 restriction 2 plasmid 2 cloning 2 next-generation sequencing 2 visualization 2 blast 2 genbank 2 SNP 2 disease 2 format 2 converter 2 computational 2 enzyme 2 STR 2 MPS 2 forensics 2 image 2 statistics 2 Barrick 2 Bio 2 sequences 2 Encrypt 2 based 2 code 2 rna 2 barcodes 2 kmer 2 primer 2 sanger-chromatograms 2 phosphorylation 2 TopDB 1 TRRD 1