crates.io "metagenomics" keyword
View the packages on the crates.io package registry that are tagged with the "metagenomics" keyword.
bracken 0.1.0
Rust-based implementation of the Bracken library for enhanced k-mer based genomic abundance estim...1 version - Latest release: about 1 year ago - 1.16 thousand downloads total - 0 stars on GitHub - 1 maintainer
lorikeet-genome 0.8.2
Strain resolver and variant caller via local reassembly for metagenomics1 version - Latest release: almost 2 years ago - 1.5 thousand downloads total - 79 stars on GitHub - 1 maintainer
kun_peng 0.7.5
Kun-peng: an ultra-fast, low-memory footprint and accurate taxonomy classifier for all8 versions - Latest release: 5 months ago - 8.32 thousand downloads total - 9 stars on GitHub - 1 maintainer
ncbi_dl 0.1.8
download ncbi genome file2 versions - Latest release: about 1 year ago - 2 thousand downloads total - 9 stars on GitHub - 1 maintainer
nohuman 0.4.0
Remove human reads from a sequencing run6 versions - Latest release: about 1 month ago - 5.18 thousand downloads total - 40 stars on GitHub - 1 maintainer
scrubby 0.4.0
Remove or extract background taxa for metagenomic diagnostic applications3 versions - Latest release: 11 months ago - 3.36 thousand downloads total - 16 stars on GitHub - 1 maintainer
kractor 2.0.0
Extract reads from a FASTQ file based on taxonomic classification via Kraken2.4 versions - Latest release: 25 days ago - 2.49 thousand downloads total - 10 stars on GitHub - 1 maintainer
krakenxtract 0.4.0
Extract reads from a FASTQ file based on taxonomic classification via Kraken2.4 versions - Latest release: almost 2 years ago - 4.65 thousand downloads total - 10 stars on GitHub - 1 maintainer
seqkmer 0.1.2
sequence kmer3 versions - Latest release: 7 months ago - 2.81 thousand downloads total - 9 stars on GitHub - 1 maintainer
kraken2_rs
An ultra-fast, low-memory footprint and accurate taxonomy classifier for all2 versions - Latest release: 11 days ago - 2.11 thousand downloads total - 0 stars on GitHub - 1 maintainer
jam-rs 0.1.0-beta.2
Just another (genomic) minhash (Jam) implementation in Rust2 versions - Latest release: almost 2 years ago - 3.08 thousand downloads total - 12 stars on GitHub - 1 maintainer
skani 0.1.1
skani is a fast tool for calculating ANI between metagenomic sequences, such as metagenome-assemb...2 versions - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 5.65 thousand downloads total - 210 stars on GitHub - 1 maintainer
umgap 1.1.0
The Unipept Metagenomics Analysis Pipeline4 versions - Latest release: over 1 year ago - 5.19 thousand downloads total - 12 stars on GitHub - 1 maintainer
rust-pangenome 0.1.0 removed
processing metagenome-genome-pangenome annotation1 version - Latest release: 10 months ago - 485 downloads total - 0 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
13
taxonomy
4
microbiome
4
exposome
3
kraken2
3
sequence-classification
3
kraken
3
fastq
3
rust
2
dna
2
rust-lang
1
genomics
1
kmer
1
sequence
1
classification
1
minhash
1
jaccard
1
containment
1
average-nucleotide-identity
1
transcriptonomics
1
unipept
1
bio
1
genome-analysis
1
metagenomics-data
1
extraction
1
background
1
alignment
1
scrubby
1
meta-gp
1
host
1
depletion
1
cerebro
1
human-read-removal
1
human-contamination
1
contamination-removal
1
contamination
1
ncbi
1
strain-anlaysis
1
variant-calling
1