Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
crates.io "metagenomics" keyword
kractor 0.4.0
Extract reads from a FASTQ file based on taxonomic classification via Kraken2.1 version - Latest release: 8 months ago - 332 downloads total - 1 stars on GitHub - 1 maintainer
krakenxtract 0.4.0
Extract reads from a FASTQ file based on taxonomic classification via Kraken2.4 versions - Latest release: 8 months ago - 1.1 thousand downloads total - 1 stars on GitHub - 1 maintainer
lorikeet-genome 0.8.2
Strain resolver and variant caller via local reassembly for metagenomics1 version - Latest release: 6 months ago - 266 downloads total - 64 stars on GitHub - 1 maintainer
skani 0.1.1
skani is a fast tool for calculating ANI between metagenomic sequences, such as metagenome-assemb...2 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 1.34 thousand downloads total - 127 stars on GitHub - 1 maintainer
nohuman 0.1.0
Remove human reads from a sequencing run1 version - Latest release: 5 months ago - 292 downloads total - 9 stars on GitHub - 1 maintainer
umgap 1.1.0
The Unipept Metagenomics Analysis Pipeline4 versions - Latest release: 3 months ago - 1.65 thousand downloads total - 10 stars on GitHub - 1 maintainer
scrubby 0.2.0
Remove or extract background taxa for metagenomic diagnostic applications2 versions - Latest release: over 1 year ago - 587 downloads total - 12 stars on GitHub - 1 maintainer
jam-rs 0.1.0-beta.2
Just another (genomic) minhash (Jam) implementation in Rust2 versions - Latest release: 6 months ago - 512 downloads total - 12 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
7
taxonomy
4
fastq
3
kraken
3
rust
2
containment
1
jaccard
1
minhash
1
host
1
extraction
1
depletion
1
background
1
meta-gp
1
depletion-extraction
1
alignment
1
transcriptonomics
1
unipept
1
dna
1
bio
1
human-read-removal
1
human-contamination
1
contamination-removal
1
contamination
1
average-nucleotide-identity
1
variant-calling
1
strain-anlaysis
1