crates.io "metagenomics" keyword
View the packages on the crates.io package registry that are tagged with the "metagenomics" keyword.
skani 0.1.1
skani is a fast tool for calculating ANI between metagenomic sequences, such as metagenome-assemb...2 versions - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 5.58 thousand downloads total - 201 stars on GitHub - 1 maintainer
nohuman 0.4.0
Remove human reads from a sequencing run6 versions - Latest release: about 9 hours ago - 4.68 thousand downloads total - 40 stars on GitHub - 1 maintainer
krakenxtract 0.4.0
Extract reads from a FASTQ file based on taxonomic classification via Kraken2.4 versions - Latest release: almost 2 years ago - 4.47 thousand downloads total - 9 stars on GitHub - 1 maintainer
kractor 1.0.1
Extract reads from a FASTQ file based on taxonomic classification via Kraken2.3 versions - Latest release: about 1 month ago - 2.09 thousand downloads total - 9 stars on GitHub - 1 maintainer
scrubby 0.4.0
Remove or extract background taxa for metagenomic diagnostic applications3 versions - Latest release: 10 months ago - 3.2 thousand downloads total - 16 stars on GitHub - 1 maintainer
kraken2_rs
An ultra-fast, low-memory footprint and accurate taxonomy classifier for all2 versions - Latest release: 5 days ago - 2.01 thousand downloads total - 0 stars on GitHub - 1 maintainer
seqkmer 0.1.2
sequence kmer3 versions - Latest release: 6 months ago - 2.62 thousand downloads total - 9 stars on GitHub - 1 maintainer
jam-rs 0.1.0-beta.2
Just another (genomic) minhash (Jam) implementation in Rust2 versions - Latest release: over 1 year ago - 2.9 thousand downloads total - 12 stars on GitHub - 1 maintainer
bracken 0.1.0
Rust-based implementation of the Bracken library for enhanced k-mer based genomic abundance estim...1 version - Latest release: 11 months ago - 1.05 thousand downloads total - 0 stars on GitHub - 1 maintainer
ncbi_dl 0.1.8
download ncbi genome file2 versions - Latest release: 11 months ago - 1.81 thousand downloads total - 9 stars on GitHub - 1 maintainer
kun_peng 0.7.5
Kun-peng: an ultra-fast, low-memory footprint and accurate taxonomy classifier for all8 versions - Latest release: 4 months ago - 7.6 thousand downloads total - 9 stars on GitHub - 1 maintainer
umgap 1.1.0
The Unipept Metagenomics Analysis Pipeline4 versions - Latest release: over 1 year ago - 4.97 thousand downloads total - 12 stars on GitHub - 1 maintainer
lorikeet-genome 0.8.2
Strain resolver and variant caller via local reassembly for metagenomics1 version - Latest release: over 1 year ago - 1.36 thousand downloads total - 73 stars on GitHub - 1 maintainer
rust-pangenome 0.1.0 removed
processing metagenome-genome-pangenome annotation1 version - Latest release: 9 months ago - 485 downloads total - 0 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
13
microbiome
4
taxonomy
4
exposome
3
fastq
3
kraken2
3
kraken
3
sequence-classification
3
rust
2
dna
2
sequence
1
jaccard
1
containment
1
minhash
1
ncbi
1
transcriptonomics
1
unipept
1
bio
1
variant-calling
1
strain-anlaysis
1
genome-analysis
1
metagenomics-data
1
rust-lang
1
kmer
1
genomics
1
classification
1
extraction
1
background
1
alignment
1
depletion
1
cerebro
1
scrubby
1
meta-gp
1
host
1
human-read-removal
1
human-contamination
1
contamination-removal
1
contamination
1
average-nucleotide-identity
1