Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
crates.io "bioinformatics" keyword
granges 0.2.2
A Rust library and command line tool for genomic range operations.2 versions - Latest release: about 2 months ago - 683 downloads total - 57 stars on GitHub - 1 maintainer
Top 7.4% on crates.io
13 versions - Latest release: about 10 hours ago - 1 dependent package - 37 dependent repositories - 120 thousand downloads total - 775 stars on GitHub - 1 maintainer
hts-sys 2.1.4
This library provides HTSlib bindings.13 versions - Latest release: about 10 hours ago - 1 dependent package - 37 dependent repositories - 120 thousand downloads total - 775 stars on GitHub - 1 maintainer
ukhs 0.3.4
Universal K-mer Hitting Sets2 versions - Latest release: about 5 years ago - 1.24 thousand downloads total - 10 stars on GitHub - 1 maintainer
scailist 0.2.0
A fast and easy interval overlap library5 versions - Latest release: over 4 years ago - 2.28 thousand downloads total - 1 stars on GitHub - 1 maintainer
casgen 0.1.4
A way to generate cas12 6-plex CRISPR sequences4 versions - Latest release: over 1 year ago - 1.22 thousand downloads total - 0 stars on GitHub - 1 maintainer
rosalind-cli 0.0.15
CLI for `rosalind` crate15 versions - Latest release: over 7 years ago - 11.2 thousand downloads total - 0 stars on GitHub - 1 maintainer
disambiseq 0.1.10
Create unambiguous one-off mismatch libraries for DNA sequences11 versions - Latest release: 11 months ago - 3 dependent packages - 3.72 thousand downloads total - 0 stars on GitHub - 1 maintainer
taxonomy 0.10.0
Routines for loading, saving, and manipulating taxonomic trees17 versions - Latest release: about 1 year ago - 1 dependent package - 8.78 thousand downloads total - 32 stars on GitHub - 4 maintainers
rboss 0.3.2
Rust Bioinformatics Toolbox4 versions - Latest release: 3 months ago - 1.13 thousand downloads total - 1 stars on GitHub - 1 maintainer
Top 4.9% on crates.io
60 versions - Latest release: 3 months ago - 43 dependent packages - 54 dependent repositories - 302 thousand downloads total - 260 stars on GitHub - 1 maintainer
rust-htslib 0.46.0
This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.60 versions - Latest release: 3 months ago - 43 dependent packages - 54 dependent repositories - 302 thousand downloads total - 260 stars on GitHub - 1 maintainer
scidataflow 0.8.11
A command-line tool to manage scientific research project data.8 versions - Latest release: 2 months ago - 2.69 thousand downloads total - 176 stars on GitHub - 1 maintainer
gfa 0.10.1
Library for working with graphs in the GFA (Graphical Fragment Assembly) format18 versions - Latest release: over 1 year ago - 7 dependent packages - 11 dependent repositories - 23.5 thousand downloads total - 28 stars on GitHub - 1 maintainer
fastq-count 0.1.0
Simple fastq read and base counter for paired data.1 version - Latest release: about 5 years ago - 706 downloads total - 3 stars on GitHub - 1 maintainer
phcue-ck 0.2.0
phcue-ck is a command line tool to obtain FTP links to FASTQ files from ENA using run accession4 versions - Latest release: over 1 year ago - 1.19 thousand downloads total - 1 stars on GitHub - 1 maintainer
bedrs 0.2.25
Genomic interval library in rust47 versions - Latest release: about 21 hours ago - 3 dependent packages - 1 dependent repositories - 13.5 thousand downloads total - 30 stars on GitHub - 1 maintainer
proteinogenic 0.2.0
Chemical structure generation for protein sequences as SMILES string2 versions - Latest release: about 2 years ago - 761 downloads total - 4 stars on GitHub - 1 maintainer
mmap-bitvec 0.4.1
A library for working with bit-vectors backed by memory-mapped files2 versions - Latest release: 7 months ago - 1 dependent package - 1 dependent repositories - 1.03 thousand downloads total - 5 stars on GitHub - 3 maintainers
patoz 0.1.0
Protein Data Bank (pdb) File Parser1 version - Latest release: about 4 years ago - 527 downloads total - 9 stars on GitHub - 1 maintainer
protein-translate 0.2.0
Translate nucleotide sequence to protein.4 versions - Latest release: over 4 years ago - 1 dependent repositories - 2.82 thousand downloads total - 5 stars on GitHub - 1 maintainer
genome-graph 8.0.0
Representation of genome graphs38 versions - Latest release: 9 months ago - 2 dependent packages - 2 dependent repositories - 14.3 thousand downloads total - 1 maintainer
illumina_coordinates 0.9.1
Parses Illumina sequence identifiers found in FASTQ files2 versions - Latest release: over 5 years ago - 1.35 thousand downloads total - 0 stars on GitHub - 1 maintainer
libsfasta 0.3.4
Better FASTA sequence compression and querying2 versions - Latest release: over 1 year ago - 1 dependent package - 982 downloads total - 27 stars on GitHub - 1 maintainer
sfasta 0.3.5
Better FASTA sequence compression and querying6 versions - Latest release: over 1 year ago - 1.8 thousand downloads total - 27 stars on GitHub - 1 maintainer
psdm 0.2.0
Compute a pairwise SNP distance matrix from one or two alignment(s)2 versions - Latest release: almost 2 years ago - 714 downloads total - 16 stars on GitHub - 1 maintainer
lightmotif-tfmpvalue 0.6.0
Rust reimplementation of TFMPvalue for the lightmotif crate.5 versions - Latest release: 5 months ago - 1.29 thousand downloads total - 34 stars on GitHub - 1 maintainer
lightmotif-io 0.6.0
Motif parsers implementation for the lightmotif crate.1 version - Latest release: 5 months ago - 799 downloads total - 34 stars on GitHub - 1 maintainer
lightmotif 0.6.0
A lightweight platform-accelerated library for biological motif scanning using position weight ma...8 versions - Latest release: 5 months ago - 3 dependent packages - 4.05 thousand downloads total - 34 stars on GitHub - 1 maintainer
lightmotif-transfac 0.6.0
TRANSFAC parser implementation for the lightmotif crate.8 versions - Latest release: 5 months ago - 2.05 thousand downloads total - 34 stars on GitHub - 1 maintainer
lightmotif-py 0.6.0
PyO3 bindings and Python interface to the lightmotif crate.8 versions - Latest release: 5 months ago - 2.03 thousand downloads total - 34 stars on GitHub - 1 maintainer
recmap 0.3.5
A library for reading and working with recombination maps in Rust5 versions - Latest release: about 2 months ago - 1.41 thousand downloads total - 6 stars on GitHub - 1 maintainer
Top 7.8% on crates.io
15 versions - Latest release: about 1 year ago - 35 dependent packages - 24 dependent repositories - 181 thousand downloads total - 126 stars on GitHub - 4 maintainers
needletail 0.5.1
FASTX parsing and k-mer methods15 versions - Latest release: about 1 year ago - 35 dependent packages - 24 dependent repositories - 181 thousand downloads total - 126 stars on GitHub - 4 maintainers
block-aligner 0.5.0
SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence ...10 versions - Latest release: 9 months ago - 2 dependent repositories - 4.65 thousand downloads total - 116 stars on GitHub - 1 maintainer
nohuman 0.1.0
Remove human reads from a sequencing run1 version - Latest release: 5 months ago - 292 downloads total - 9 stars on GitHub - 1 maintainer
gia 0.2.23
A tool for set theoretic operations of genomic intervals11 versions - Latest release: 4 days ago - 2.46 thousand downloads total - 45 stars on GitHub - 1 maintainer
fpa_lr 0.5.1
fpa filter long read mapping information to save disk space7 versions - Latest release: almost 4 years ago - 4.33 thousand downloads total - 41 stars on GitHub - 1 maintainer
seqsizzle 0.1.4
A pager for viewing FASTQ files with fuzzy matching, allowing different adaptors to be colored di...1 version - Latest release: about 2 months ago - 354 downloads total - 7 stars on GitHub - 1 maintainer
nom-pdb 0.0.9
PDB parser implemented with nom5 versions - Latest release: over 3 years ago - 2 dependent packages - 1 dependent repositories - 4.08 thousand downloads total - 8 stars on GitHub - 1 maintainer
segul 0.21.1
An ultrafast and memory efficient tool for phylogenomics58 versions - Latest release: 4 days ago - 17.2 thousand downloads total - 13 stars on GitHub - 1 maintainer
fastix 0.1.0
prefix renaming FASTA records1 version - Latest release: 9 months ago - 505 downloads total - 11 stars on GitHub - 1 maintainer
skc 0.1.0
Shared k-mer content between two genomes1 version - Latest release: 11 months ago - 329 downloads total - 17 stars on GitHub - 1 maintainer
fakit 0.3.5
fakit: a simple program for fasta file manipulation19 versions - Latest release: 5 days ago - 4.73 thousand downloads total - 0 stars on GitHub - 1 maintainer
sketchy-rs 0.6.0
Rust command line client for Sketchy5 versions - Latest release: over 1 year ago - 2.01 thousand downloads total - 43 stars on GitHub - 1 maintainer
gtfsort 0.2.2
An optimized chr/pos/feature GTF2.5-3 sorter using a lexicographic-based index ordering algorithm...4 versions - Latest release: 2 months ago - 1.22 thousand downloads total - 23 stars on GitHub - 1 maintainer
fxread 0.2.12
A barebones fastx reader for rust19 versions - Latest release: 4 months ago - 5 dependent packages - 7.42 thousand downloads total - 0 stars on GitHub - 1 maintainer
rnapkin 0.3.9
CLI utility for drawing RNA secondary structure13 versions - Latest release: about 1 year ago - 1 dependent repositories - 3.97 thousand downloads total - 5 stars on GitHub - 1 maintainer
readmerger 0.1.0-alpha
Tool for rapidly merging FASTQ files. Never use cat again!1 version - Latest release: 6 months ago - 300 downloads total - 0 stars on GitHub - 1 maintainer
mudskipper 0.1.0
Convert genomic alignments to transcriptomic BAM/RAD files.1 version - Latest release: about 2 years ago - 1.12 thousand downloads total - 28 stars on GitHub - 1 maintainer
rasusa 2.0.0
Randomly subsample reads or alignments13 versions - Latest release: 7 days ago - 4.42 thousand downloads total - 186 stars on GitHub - 1 maintainer
saboten 0.1.1
Provides biedged graphs, cactus graphs and trees, and an algorithm for finding ultrabubbles in va...9 versions - Latest release: over 3 years ago - 1 dependent package - 1 dependent repositories - 4.52 thousand downloads total - 6 stars on GitHub - 1 maintainer
casmap 0.1.3
A way to count and characterize constructs for cas12 6-plex CRISPR screens4 versions - Latest release: over 1 year ago - 1.19 thousand downloads total - 2 stars on GitHub - 1 maintainer
bam-builder 1.0.0
A library for easily building BAMs for testing.5 versions - Latest release: 7 months ago - 1.85 thousand downloads total - 10 stars on GitHub - 1 maintainer
hirschberg 0.1.0
Generic implementation of Hirschberg's algorithm in Rust1 version - Latest release: 5 months ago - 308 downloads total - 2 stars on GitHub - 1 maintainer
rna-algos 0.1.37
Library of RNA Bioinformatics Algorithms38 versions - Latest release: about 1 year ago - 6 dependent packages - 1 dependent repositories - 21.4 thousand downloads total - 2 stars on GitHub - 1 maintainer
bam2seq 0.1.2
Extract reads and reconstructed references from a .bam file using CIGAR and MD tags.3 versions - Latest release: over 1 year ago - 890 downloads total - 5 stars on GitHub - 1 maintainer
chiral-derive 0.1.4
Derive Macro for chiral2 versions - Latest release: 11 months ago - 2 dependent packages - 1.73 thousand downloads total - 1 stars on GitHub - 1 maintainer
sprocket 0.1.0
A package manager for the Workflow Description Language files2 versions - Latest release: about 2 months ago - 811 downloads total - 9 stars on GitHub - 1 maintainer
drprg 0.1.1
Drug resistance prediction with reference graphs2 versions - Latest release: about 1 year ago - 595 downloads total - 19 stars on GitHub - 1 maintainer
bamrescue 0.3.0
Utility to check Binary Sequence Alignment / Map (BAM) files for corruption and repair them3 versions - Latest release: almost 2 years ago - 1.88 thousand downloads total - 5 stars on GitHub - 1 maintainer
ebiotic 0.0.25
A Rust crate for interacting with common bioinformatics web services.7 versions - Latest release: about 2 months ago - 2.21 thousand downloads total - 0 stars on GitHub - 1 maintainer
wdl 0.2.0
Document lexing, parsing, validation, and linting for Workflow Description Language (WDL) documents3 versions - Latest release: 5 months ago - 906 downloads total - 14 stars on GitHub - 1 maintainer
wdl-grammar 0.2.0
A parse tree for Workflow Description Language (WDL) documents2 versions - Latest release: 5 months ago - 1 dependent package - 902 downloads total - 14 stars on GitHub - 1 maintainer
wdl-ast 0.1.0
An abstract syntax tree for Workflow Description Language (WDL) documents2 versions - Latest release: 5 months ago - 709 downloads total - 14 stars on GitHub - 1 maintainer
wdl-macros 0.1.0
Macros used within the `wdl` crate ecosystem.1 version - Latest release: 5 months ago - 566 downloads total - 14 stars on GitHub - 1 maintainer
rust-sasa 0.2.2
RustSASA is a Rust library for computing the absolute solvent accessible surface area (ASA/SASA) ...5 versions - Latest release: 10 days ago - 1.25 thousand downloads total - 3 stars on GitHub - 1 maintainer
hyperex 0.1.1
Hypervariable region primer-based extracted2 versions - Latest release: over 2 years ago - 891 downloads total - 9 stars on GitHub - 1 maintainer
rm-frust5-api 0.0.3
A rust wrapper of the HDF5 crate for handling Oxford Nanopore Technologies FAST5 files.3 versions - Latest release: almost 2 years ago - 1.12 thousand downloads total - 0 stars on GitHub - 1 maintainer
ehxacto 0.1.0
Find exact tandem repeat coordinates from approximate regions identified by ExpansionHunter denovo1 version - Latest release: 9 days ago - 129 downloads total - 0 stars on GitHub - 1 maintainer
sabreur 0.5.0
sabreur is a barcode demultiplexing tool for fasta and fastq files10 versions - Latest release: over 1 year ago - 3.13 thousand downloads total - 14 stars on GitHub - 1 maintainer
skani 0.1.1
skani is a fast tool for calculating ANI between metagenomic sequences, such as metagenome-assemb...2 versions - Latest release: about 1 year ago - 1 dependent repositories - 1.34 thousand downloads total - 127 stars on GitHub - 1 maintainer
htsget-test 0.5.4
Common test functions and utilities used by htsget-rs.14 versions - Latest release: 4 months ago - 4 dependent packages - 4.78 thousand downloads total - 36 stars on GitHub - 2 maintainers
htsget-http 0.4.12
Crate for handling HTTP in htsget-rs.16 versions - Latest release: 4 months ago - 3 dependent packages - 1 dependent repositories - 4.83 thousand downloads total - 36 stars on GitHub - 2 maintainers
htsget-lambda 0.4.14
A cloud-based instance of htsget-rs, using AWS Lambda, which can be configured using htsget-config.18 versions - Latest release: 4 months ago - 4.55 thousand downloads total - 36 stars on GitHub - 2 maintainers
htsget-config 0.8.1
Used to configure htsget-rs by using a config file or reading environment variables.16 versions - Latest release: 4 months ago - 5 dependent packages - 1 dependent repositories - 5.7 thousand downloads total - 36 stars on GitHub - 2 maintainers
htsget-actix 0.5.8
A webserver instance of htsget-rs configured using htsget-config.18 versions - Latest release: 4 months ago - 4.55 thousand downloads total - 36 stars on GitHub - 2 maintainers
htsget-search 0.6.6
The primary mechanism by which htsget-rs interacts with, and processes bioinformatics files. It d...17 versions - Latest release: 4 months ago - 4 dependent packages - 1 dependent repositories - 5.33 thousand downloads total - 36 stars on GitHub - 2 maintainers
rna-ss-params 0.1.24
Library of RNA secondary structure parameters25 versions - Latest release: about 1 year ago - 1 dependent package - 1 dependent repositories - 18.9 thousand downloads total - 0 stars on GitHub - 1 maintainer
exon-bam 0.20.0 💰
Exon BAM52 versions - Latest release: 16 days ago - 1 dependent package - 16.7 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-sam 0.20.0 💰
Exon SAM33 versions - Latest release: 16 days ago - 9.96 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-exome 💰
Exon X Exome16 versions - Latest release: 9 days ago - 3.75 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-fastq 0.20.0 💰
FASTQ support for Exon.42 versions - Latest release: 16 days ago - 1 dependent package - 13.9 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon 0.20.0 💰
A platform for scientific data processing and analysis.85 versions - Latest release: 16 days ago - 2 dependent packages - 1 dependent repositories - 27.9 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-common 0.20.0 💰
Common utilities for Exon53 versions - Latest release: 16 days ago - 6 dependent packages - 18.8 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-bed 0.20.0 💰
Subcrate of the `exon` crate for working with BED files.40 versions - Latest release: 16 days ago - 1 dependent package - 13.3 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-py 0.11.0 💰
Python bindings for Exon1 version - Latest release: 2 months ago - 331 downloads total - 27 stars on GitHub - 1 maintainer
exon-test 0.3.4-beta.9 💰
Exon test crate3 versions - Latest release: 7 months ago - 3 dependent packages - 750 downloads total - 27 stars on GitHub - 1 maintainer
exon-bigwig 0.20.0 💰
Subcrate of the `exon` crate for working with BigWig files.12 versions - Latest release: 16 days ago - 2.36 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-bcf 0.20.0 💰
Exon BCF32 versions - Latest release: 16 days ago - 10.6 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-fcs 0.20.0 💰
Exon FCS32 versions - Latest release: 16 days ago - 10.5 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-gtf 0.20.0 💰
GTF datasource for Exon40 versions - Latest release: 16 days ago - 1 dependent package - 13.3 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-mzml 0.20.0 💰
Exon MzML32 versions - Latest release: 16 days ago - 10.5 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-cram 0.20.0 💰
Exon CRAM13 versions - Latest release: 16 days ago - 3.2 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-gff 0.20.0 💰
A library for reading and writing GFF files with Exon.48 versions - Latest release: 16 days ago - 1 dependent package - 15.8 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-io 0.20.0 💰
IO utilities for Exon.52 versions - Latest release: 16 days ago - 1 dependent package - 17.5 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-fasta 0.20.0 💰
A library for reading and writing FASTA files with Exon.50 versions - Latest release: 16 days ago - 1 dependent package - 16.2 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-genbank 0.20.0 💰
Exon GenBank32 versions - Latest release: 16 days ago - 10.5 thousand downloads total - 27 stars on GitHub - 1 maintainer
exon-vcf 0.20.0 💰
Exon VCF32 versions - Latest release: 16 days ago - 10.7 thousand downloads total - 27 stars on GitHub - 1 maintainer
libwfa 0.1.2
Bindings to the C implementation of the WFA alignment algorithm3 versions - Latest release: over 3 years ago - 2 dependent repositories - 2.98 thousand downloads total - 18 stars on GitHub - 1 maintainer
chiral-apps 0.1.3
Applications available on chiral1 version - Latest release: about 1 year ago - 349 downloads total - 1 stars on GitHub - 1 maintainer
chiral-common 0.1.4
Common Stuff of Chiral: An All-in-One Data Processing Tool5 versions - Latest release: 11 months ago - 5 dependent packages - 1 dependent repositories - 2.49 thousand downloads total - 1 stars on GitHub - 1 maintainer
gtfjson 0.1.6
A tool to convert GTF files to newline-delim JSON2 versions - Latest release: 7 months ago - 544 downloads total - 0 stars on GitHub - 1 maintainer
Related Keywords
rust
77
genomics
41
ngs
28
rna
26
biology
24
protein
23
proteomics
23
fastq
21
sql
21
datafusion
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arrow
21
fasta
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cli
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dna
17
sequencing
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science
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alignment
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parser
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rust-library
12
genetics
11
data
11
crispr
10
simd
10
genomic
10
computational-biology
10
cheminformatics
9
bam
9
sequence
8
secondary-structure
8
ffi
8
genes
8
algorithms
8
metagenomics
7
minhash
7
gtf
7
ai
7
bioinfo
7
ncbi
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aws-lambda
6
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6
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6
rust-lang
6
sequence-analysis
6
genome
6
htsget
6
compression
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sequence-motif
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sequence-alignment
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5
next-generation-sequencing
5
gff3
4
hts
4
interval
4
transcriptomics
4
phylogenetics
4
sgrna
4
nucleotide
4
protein-sequences
4
reproducibility
4
motif
4
nom
4
bed
4
long-read
3
sam
3
vcf
3
kraken
3
matrix
3
kmer
3
hpc
3
sketches
3
htslib
3
phylogenetic-trees
3
newick
3
fast5
3
pileup
3
ranges
3
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2
protein-structure
2
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2
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2
phylogeny
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pairwise-alignment
2
sequence-alignments
2