Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
juliahub.com "bioinformatics" keyword
Bedgraph 2.3.0
Read and write support for bedGraph file format.14 versions - Latest release: 4 days ago - 1 dependent package - 0 stars on GitHub
BedgraphFiles 2.4.0
FileIO.jl integration for bedGraph files12 versions - Latest release: 5 days ago - 2 stars on GitHub
BioFindr 1.0.3
Fast Inference of Biological Networks from Directed Regulations (Findr) in Julia4 versions - Latest release: 13 days ago - 1 stars on GitHub
BioRecordsProcessing 0.2.3
Process your biological records with ease5 versions - Latest release: 17 days ago - 5 stars on GitHub
Pipelines 0.10.6
A lightweight and powerful Julia package for computational pipelines and workflows.53 versions - Latest release: 30 days ago - 1 dependent package - 43 stars on GitHub
VariantCallFormat 0.5.6
Read and write VCF and BCF files7 versions - Latest release: about 1 month ago - 7 dependent packages - 12 stars on GitHub
GeneFinder 0.3.0
A Gene Finder framework for Julia.23 versions - Latest release: about 1 month ago - 14 stars on GitHub
BioMarkovChains 0.9.3
Representing biological sequences as Markov chains20 versions - Latest release: about 1 month ago - 5 stars on GitHub
GeneticsMakie 0.2.1
🧬High-performance genetics- and genomics-related data visualization using Makie.jl8 versions - Latest release: about 2 months ago - 70 stars on GitHub
GenLib 0.1.3
A pure Julia port of R's GENLIB genetics and genealogical library3 versions - Latest release: about 2 months ago - 1 stars on GitHub
GenomicAnnotations 0.3.7
18 versions - Latest release: about 2 months ago - 2 dependent packages - 3 dependent repositories - 11 stars on GitHubBurrowsWheelerAligner 0.1.3
Binding for bwa2 versions - Latest release: 2 months ago - 8 stars on GitHub
BioSimplex 0.2.0
Representing BioSequences as Simplex numerical matrix2 versions - Latest release: 2 months ago - 0 stars on GitHub
MIToS 2.15.0
Mutual Information Tools for protein Sequence analysis in Julia30 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 64 stars on GitHub
BioVossEncoder 0.4.0
A small Julia package to represent BioSequences as a Voss matrix4 versions - Latest release: 3 months ago - 1 stars on GitHub
NewickTree 0.3.1
Newick formatted (phylogenetic) trees6 versions - Latest release: 3 months ago - 8 stars on GitHub
Knockoffs 1.1.8
Variable Selection with Knockoffs13 versions - Latest release: 3 months ago - 6 stars on GitHub
XAM 0.4.0 💰
Parse and process SAM and BAM formatted files14 versions - Latest release: 3 months ago - 4 dependent packages - 23 stars on GitHub
GenomicMaps 0.1.4
Julia package for visualising genomic data5 versions - Latest release: 4 months ago - 14 stars on GitHub
Top 5.0% on juliahub.com
15 versions - Latest release: 4 months ago - 13 dependent packages - 480 stars on GitHub
Dash 1.5.0 💰
Dash for Julia - A Julia interface to the Dash ecosystem for creating analytic web applications i...15 versions - Latest release: 4 months ago - 13 dependent packages - 480 stars on GitHub
Top 7.8% on juliahub.com
31 versions - Latest release: 4 months ago - 4 dependent packages - 8 dependent repositories - 77 stars on GitHub
BioStructures 3.0.0
A Julia package to read, write and manipulate macromolecular structures (particularly proteins)31 versions - Latest release: 4 months ago - 4 dependent packages - 8 dependent repositories - 77 stars on GitHub
Top 2.9% on juliahub.com
19 versions - Latest release: 7 months ago - 30 dependent packages - 51 dependent repositories - 141 stars on GitHub
BioSequences 3.1.6
Biological sequences for the julia language19 versions - Latest release: 7 months ago - 30 dependent packages - 51 dependent repositories - 141 stars on GitHub
FastaIO 1.0.2
Utilities to read/write FASTA format files in Julia5 versions - Latest release: 7 months ago - 6 dependent packages - 12 dependent repositories - 15 stars on GitHub
sparseQFCA 1.9.0
Developed a registered Julia package which quantifies the redundancies in genome-scale metabolic ...13 versions - Latest release: 8 months ago - 1 stars on GitHub
BulkLMM 1.2.0
Linear mixed model genome scans for many traits6 versions - Latest release: 9 months ago - 3 stars on GitHub
Taxonomy 0.4.4
Julia package to handle the NCBI Taxonomy database.11 versions - Latest release: 9 months ago - 12 stars on GitHub
BioLab 0.13.1 💰
The nuclear package for various bioinformatics projects like GSEA.jl 🧬4 versions - Latest release: 9 months ago - 11 stars on GitHub
BGZFStreams 0.3.2 💰
BGZF Stream3 versions - Latest release: 10 months ago - 9 dependent packages - 13 dependent repositories - 12 stars on GitHub
GFF3 0.2.3 💰
6 versions - Latest release: 10 months ago - 9 stars on GitHubBio3DView 0.1.5
A Julia package to view macromolecular structures in the REPL, in a Jupyter notebook/JupyterLab o...6 versions - Latest release: 10 months ago - 3 dependent packages - 32 stars on GitHub
MOTIFs 0.1.2
DNA Motif discovery that includes the discovery of flexible (long or gapped) motifs.3 versions - Latest release: 10 months ago - 7 stars on GitHub
SeqShuffle 0.2.2
Shuffle the string sequences such that the k-mer frequency is preserved in each string4 versions - Latest release: 12 months ago - 3 dependent packages - 8 stars on GitHub
Top 9.4% on juliahub.com
13 versions - Latest release: 12 months ago - 10 dependent packages - 12 dependent repositories - 28 stars on GitHub
BioSymbols 5.1.3
Nucleic and amino acid primitive types13 versions - Latest release: 12 months ago - 10 dependent packages - 12 dependent repositories - 28 stars on GitHub
FlashWeave 0.19.2
Inference of microbial interaction networks from large-scale heterogeneous abundance data13 versions - Latest release: almost 1 year ago - 66 stars on GitHub
GeneticVariation 0.4.1
Datastructures and algorithms for working with genetic variation2 versions - Latest release: about 1 year ago - 3 dependent packages - 8 dependent repositories - 36 stars on GitHub
SimpleBio 0.3.0
Easy-to-use biological sequence tools working with DNA, RNA and aminoacid sequences.4 versions - Latest release: over 1 year ago - 7 stars on GitHub
MetaPhylo 0.1.1
Phylogenetic trees with metadata by Julia based on Graphs.jl and AbstractTrees.jl.2 versions - Latest release: over 1 year ago - 4 stars on GitHub
BioMart 0.1.1
Make simple requests to Ensembl BioMart database.1 version - Latest release: over 1 year ago - 4 stars on GitHub
Top 6.4% on juliahub.com
8 versions - Latest release: over 1 year ago - 12 dependent packages - 13 dependent repositories - 56 stars on GitHub
BioAlignments 3.1.0 💰
Sequence alignment tools8 versions - Latest release: over 1 year ago - 12 dependent packages - 13 dependent repositories - 56 stars on GitHub
CDLmotif 0.1.0
Discover DNA sequence motifs using convolutional dictionary learning1 version - Latest release: over 1 year ago
ReadDatastores 0.4.0 💰
Datastores for reads, not your papa's FASTQ files.5 versions - Latest release: over 1 year ago - 2 dependent packages - 10 stars on GitHub
NormalizeQuantiles 1.2.2
NormalizeQuantiles.jl implements quantile normalization9 versions - Latest release: over 1 year ago - 7 stars on GitHub
GenomeGraphs 0.2.0 💰
A modern genomics framework for julia2 versions - Latest release: over 1 year ago - 1 dependent package - 64 stars on GitHub
Bio 1.0.1
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia2 versions - Latest release: over 1 year ago - 8 dependent repositories - 257 stars on GitHub
MicrobiomeAnalysis 0.4.0
Functions and workflows for the analysis of microbiome data.4 versions - Latest release: almost 2 years ago - 3 stars on GitHub
BED 0.3.0 💰
5 versions - Latest release: about 2 years ago - 1 dependent package - 6 stars on GitHubBioGraph 0.1.2
A Julia package for handle genome graph in the GFA format.2 versions - Latest release: about 2 years ago - 10 stars on GitHub
MotifPvalue 0.1.0
Threshold and p-value computations for Position Weight Matrices1 version - Latest release: over 2 years ago - 2 stars on GitHub
SubstitutionModels 0.5.0
Biological Sequence Substitution Models for Julia8 versions - Latest release: over 2 years ago - 1 dependent package - 16 stars on GitHub
GeneticBitArrays 0.3.2
BitArray representation of genetic sequences in Julia6 versions - Latest release: over 2 years ago - 1 dependent package - 5 stars on GitHub
MMTF 1.0.0
A julia package to parse and write MMTF file3 versions - Latest release: almost 3 years ago - 1 dependent package - 7 stars on GitHub
BigBed 0.1.0 💰
1 version - Latest release: almost 4 years ago - 3 stars on GitHubBigWig 0.1.0 💰
1 version - Latest release: almost 4 years ago - 4 stars on GitHubPhyloTrees 0.11.1
Phylogenetic trees in Julia4 versions - Latest release: almost 4 years ago - 1 dependent package - 22 stars on GitHub
Top 8.5% on juliahub.com
6 versions - Latest release: over 5 years ago - 14 dependent packages - 26 dependent repositories - 29 stars on GitHub
BioCore 2.0.5
Core types and interfaces for BioJulia packages6 versions - Latest release: over 5 years ago - 14 dependent packages - 26 dependent repositories - 29 stars on GitHub
Related Keywords
julia
32
biology
15
biojulia
10
genomics
9
dna
7
computational-biology
5
genetics
4
julia-language
4
rna
3
bam-files
3
motifs
3
dna-sequences
3
data-science
3
sam-files
3
machine-learning
3
pdb
3
protein-structure
3
structural-bioinformatics
3
phylogenetics
3
bam-format
2
gff3
2
regulatory-genomics
2
microbiome
2
amino-acids
2
julialang
2
bedgraph
2
phylogeny
2
transcription-factor-binding-site
2
biodiversity
2
fasta
2
structural-biology
2
protein-sequences
1
mutation
1
biomart
1
sequence-alignment
1
sequence-analysis
1
smith-waterman-alignment
1
high-throughput-sequencing
1
gff3-format
1
gff3-files
1
convolutional-dictionary-learning
1
ai
1
sequence-motifs
1
transcription-factors
1
dictionary-learning
1
dna-motifs
1
statistical-genetics
1
sequence-motif
1
fastq-files
1
shuffle
1
fasta-sequences
1
nucleotides
1
biological-data-analysis
1
machine-learning-algorithms
1
nucleic-acids
1
compositional-data
1
metagenomics
1
probabilistic-graphical-models
1
high-performance-computing
1
metadata
1
representation-learning
1
ecological-network
1
jupyter-notebook
1
co-occurence
1
ijulia
1
snps
1
pluto
1
variation
1
polymorphism
1
bioinformatics-data
1
multiassayexperiment
1
otu-table
1
mia
1
summarized-experiment
1
simulation
1
bed-format
1
genome
1
graph-genome
1
gfa
1
p-value
1
transcription-factor-binding
1
pwm
1
position-weight-matrix
1
motif
1
substitution-models
1
genetic-sequences
1
rcsb
1
mmtf
1
julia-package
1
bigbed
1
bigbed-files
1
bigwig-files
1
bigwig
1
bigwig-reader
1
phylogenetic-trees
1
io
1
genomics-data
1
sequencing
1
files
1
format
1