Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
juliahub.com "biology" keyword
Top 2.9% on juliahub.com
19 versions - Latest release: 6 months ago - 30 dependent packages - 51 dependent repositories - 141 stars on GitHub
BioSequences 3.1.6
Biological sequences for the julia language19 versions - Latest release: 6 months ago - 30 dependent packages - 51 dependent repositories - 141 stars on GitHub
Top 7.8% on juliahub.com
31 versions - Latest release: 4 months ago - 4 dependent packages - 8 dependent repositories - 77 stars on GitHub
BioStructures 3.0.0
A Julia package to read, write and manipulate macromolecular structures (particularly proteins)31 versions - Latest release: 4 months ago - 4 dependent packages - 8 dependent repositories - 77 stars on GitHub
Top 6.4% on juliahub.com
8 versions - Latest release: over 1 year ago - 12 dependent packages - 13 dependent repositories - 56 stars on GitHub
BioAlignments 3.1.0 💰
Sequence alignment tools8 versions - Latest release: over 1 year ago - 12 dependent packages - 13 dependent repositories - 56 stars on GitHub
Bio 1.0.1
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia2 versions - Latest release: over 1 year ago - 8 dependent repositories - 257 stars on GitHub
Top 4.9% on juliahub.com
72 versions - Latest release: 6 months ago - 16 dependent packages - 421 stars on GitHub
Catalyst 13.5.1 💰
Chemical reaction network and systems biology interface for scientific machine learning (SciML). ...72 versions - Latest release: 6 months ago - 16 dependent packages - 421 stars on GitHub
Top 9.4% on juliahub.com
13 versions - Latest release: 12 months ago - 10 dependent packages - 12 dependent repositories - 28 stars on GitHub
BioSymbols 5.1.3
Nucleic and amino acid primitive types13 versions - Latest release: 12 months ago - 10 dependent packages - 12 dependent repositories - 28 stars on GitHub
ReadDatastores 0.4.0 💰
Datastores for reads, not your papa's FASTQ files.5 versions - Latest release: over 1 year ago - 2 dependent packages - 10 stars on GitHub
GeneticVariation 0.4.1
Datastructures and algorithms for working with genetic variation2 versions - Latest release: about 1 year ago - 3 dependent packages - 8 dependent repositories - 36 stars on GitHub
GenomeGraphs 0.2.0 💰
A modern genomics framework for julia2 versions - Latest release: over 1 year ago - 1 dependent package - 64 stars on GitHub
SequenceVariation 0.2.2
Biological sequence variation8 versions - Latest release: about 1 year ago - 1 dependent package - 8 stars on GitHub
Top 8.5% on juliahub.com
6 versions - Latest release: over 5 years ago - 14 dependent packages - 26 dependent repositories - 29 stars on GitHub
BioCore 2.0.5
Core types and interfaces for BioJulia packages6 versions - Latest release: over 5 years ago - 14 dependent packages - 26 dependent repositories - 29 stars on GitHub
Microbiome 0.10.1
For analysis of microbiome and microbial community data26 versions - Latest release: 8 months ago - 2 dependent packages - 4 dependent repositories - 44 stars on GitHub
ReactionNetworkImporters 0.14.1 💰
Julia Catalyst.jl importers for various reaction network file formats like BioNetGen and stoichio...26 versions - Latest release: 3 months ago - 25 stars on GitHub
BioSimplex 0.2.0
Representing BioSequences as Simplex numerical matrix2 versions - Latest release: about 2 months ago - 0 stars on GitHub
GenomicAnnotations 0.3.7
18 versions - Latest release: about 2 months ago - 2 dependent packages - 3 dependent repositories - 11 stars on GitHubMIToS 2.15.0
Mutual Information Tools for protein Sequence analysis in Julia30 versions - Latest release: 2 months ago - 1 dependent package - 1 dependent repositories - 64 stars on GitHub
BioMarkovChains 0.9.3
Representing biological sequences as Markov chains20 versions - Latest release: 30 days ago - 5 stars on GitHub
TuringPatterns 0.7.0
Turing patterns simulation solver for the GeoStats.jl framework30 versions - Latest release: 6 months ago - 26 stars on GitHub
GeneFinder 0.3.0
A Gene Finder framework for Julia.23 versions - Latest release: 27 days ago - 14 stars on GitHub
Top 6.9% on juliahub.com
32 versions - Latest release: over 1 year ago - 2 dependent packages - 3 dependent repositories - 419 stars on GitHub
DiffEqBiological 4.3.0 💰
Chemical reaction network and systems biology interface for scientific machine learning (SciML). ...32 versions - Latest release: over 1 year ago - 2 dependent packages - 3 dependent repositories - 419 stars on GitHub
GenomicMaps 0.1.4
Julia package for visualising genomic data5 versions - Latest release: 4 months ago - 14 stars on GitHub
Related Keywords
bioinformatics
15
julia
10
biojulia
8
chemical-reactions
3
genomics
3
differential-equations
3
gillespie-algorithm
3
simulation
2
systems-biology-simulation
2
scientific-machine-learning
2
sciml
2
rate-laws
2
reaction-network
2
systems-biology
2
ode
2
dsl
2
sde
2
julia-language
2
dna
2
bam-files
2
sam-files
2
biological-sequences
2
structural-bioinformatics
2
protein-structure
2
pdb
2
proteins
1
pfam
1
genbank
1
genes
1
gff3
1
genome-annotation
1
machine-learning
1
chemical-kinetics
1
ecology
1
microbiome
1
io
1
variant-calling
1
genome-assembly
1
genome-graph
1
genomes
1
multiple-sequence-alignment
1
sifts
1
protein-evolution
1
coevolution
1
mutual-information
1
conservation
1
protein-sequence-analysis
1
markov-chain
1
genomics-visualization
1
gene
1
orf-search
1
gene-finding
1
algorithms
1
texture-synthesis
1
geostatistics
1
julialang
1
structural-biology
1
sequence-alignment
1
sequence-analysis
1
dna-sequences
1
smith-waterman-alignment
1
high-throughput-sequencing
1
deprecated
1
biojulia-packages
1
nucleotides
1
amino-acids
1
computational-biology
1
nucleic-acids
1
biological-data-analysis
1
sam-file
1
storage
1
format
1
files
1
sam-bam
1
fastq-format
1
fastq-files
1
fastq
1
bam-format
1
sequencing
1
genomics-data
1
bioinformatics-data
1
polymorphism
1
snps
1
mutation
1
variation
1
bio
1
genome-sequencing
1
bioinformatics-analysis
1