proxy.golang.org "nextflow" keyword
Top 6.5% on proxy.golang.org
77 versions - Latest release: 7 months ago - 90 stars on GitHub
github.com/nvuillam/vscode-groovy-lint v4.2.1+incompatible 💰
VSCode extension to lint , correct and format groovy and Jenkinsfile77 versions - Latest release: 7 months ago - 90 stars on GitHub
Top 5.1% on proxy.golang.org
15 versions - Latest release: 26 days ago - 108 stars on GitHub
github.com/replikation/what_the_phage v2.0.0+incompatible
WtP: Phage identification via nextflow and docker or singularity15 versions - Latest release: 26 days ago - 108 stars on GitHub
Top 5.1% on proxy.golang.org
15 versions - Latest release: 26 days ago - 108 stars on GitHub
github.com/replikation/What_the_Phage v2.0.0+incompatible
WtP: Phage identification via nextflow and docker or singularity15 versions - Latest release: 26 days ago - 108 stars on GitHub
Top 4.6% on proxy.golang.org
218 versions - Latest release: 4 days ago - 3,519 stars on GitHub
github.com/nextflow-io/nextflow v26.10.4+incompatible
A workflow language for data-driven computational pipelines218 versions - Latest release: 4 days ago - 3,519 stars on GitHub
Top 5.6% on proxy.golang.org
23 versions - Latest release: 8 days ago - 38 stars on GitHub
github.com/nextflow-io/vscode-language-nextflow v1.8.1
Nextflow language support for Visual Studio Editor23 versions - Latest release: 8 days ago - 38 stars on GitHub
Top 4.3% on proxy.golang.org
1 version - Latest release: over 4 years ago - 264 stars on GitHub
github.com/nf-core/Ampliseq v0.0.0-20220404113026-680a7a15ba7c removed
Amplicon sequencing analysis workflow using DADA2 and QIIME21 version - Latest release: over 4 years ago - 264 stars on GitHub
Top 5.0% on proxy.golang.org
3 versions - Latest release: about 2 years ago - 9 stars on GitHub
github.com/sydney-informatics-hub/germline-structuralv-nf v1.2.0
Germline structural variant calling pipeline for short read WGS datasets3 versions - Latest release: about 2 years ago - 9 stars on GitHub
Top 5.0% on proxy.golang.org
3 versions - Latest release: about 2 years ago - 9 stars on GitHub
github.com/Sydney-Informatics-Hub/Germline-StructuralV-nf v1.2.0
Germline structural variant calling pipeline for short read WGS datasets3 versions - Latest release: about 2 years ago - 9 stars on GitHub
Top 5.1% on proxy.golang.org
1 version - Latest release: over 1 year ago - 16 stars on GitHub
github.com/nf-core/pacvar v1.0.0
Longread PacBio sequencing processing for WGS and PureTarget1 version - Latest release: over 1 year ago - 16 stars on GitHub
Top 4.7% on proxy.golang.org
43 versions - Latest release: about 1 year ago - 29 stars on GitHub
github.com/cdcgov/tostadas v8.2.0+incompatible
🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission43 versions - Latest release: about 1 year ago - 29 stars on GitHub
Top 4.7% on proxy.golang.org
43 versions - Latest release: about 1 year ago - 29 stars on GitHub
github.com/CDCgov/tostadas v8.2.0+incompatible
🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission43 versions - Latest release: about 1 year ago - 29 stars on GitHub
Top 5.4% on proxy.golang.org
29 versions - Latest release: 8 months ago - 193 stars on GitHub
github.com/askimed/nf-test v0.9.5
Simple test framework for Nextflow pipelines29 versions - Latest release: 8 months ago - 193 stars on GitHub
Top 5.6% on proxy.golang.org
52 versions - Latest release: 3 months ago - 522 stars on GitHub
github.com/bactopia/bactopia v4.1.0+incompatible
A flexible pipeline for complete analysis of bacterial genomes52 versions - Latest release: 3 months ago - 522 stars on GitHub
Top 5.6% on proxy.golang.org
5 versions - Latest release: over 8 years ago - 18 stars on GitHub
github.com/guigolab/chip-nf v0.2.3
An automated ChIP-seq pipeline using Nextfow5 versions - Latest release: over 8 years ago - 18 stars on GitHub
Top 4.3% on proxy.golang.org
2 versions - Latest release: about 1 month ago - 5 stars on GitHub
github.com/EBI-Metagenomics/nf-modules v1.0.0
Microbiome Informatics Nextflow modules and subworkflows2 versions - Latest release: about 1 month ago - 5 stars on GitHub
Top 9.8% on proxy.golang.org
2 versions - Latest release: about 1 month ago - 5 stars on GitHub
github.com/ebi-metagenomics/nf-modules v1.0.0
Microbiome Informatics Nextflow modules and subworkflows2 versions - Latest release: about 1 month ago - 5 stars on GitHub
Top 4.3% on proxy.golang.org
1 version - Latest release: 10 months ago - 23 stars on GitHub
github.com/Nf-core/references v0.0.0-20260115131735-462662b7aa58 removed
nf-core/references is a bioinformatics pipeline that build references, for multiple use cases1 version - Latest release: 10 months ago - 23 stars on GitHub
Top 4.5% on proxy.golang.org
2 versions - Latest release: 9 months ago - 614 stars on GitHub
github.com/nf-core/sarek v0.0.0-20260210112939-e9f175045340 removed
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and ann...2 versions - Latest release: 9 months ago - 614 stars on GitHub
Top 5.1% on proxy.golang.org
1 version - Latest release: over 1 year ago - 52 stars on GitHub
github.com/nf-core/variantbenchmarking v1.0.0
Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research1 version - Latest release: over 1 year ago - 52 stars on GitHub
Top 4.3% on proxy.golang.org
1 version - Latest release: over 3 years ago - 126 stars on GitHub
github.com/nf-core/Raredisease v0.0.0-20230726085548-c371602095ff removed
Call and score variants from WGS/WES of rare disease patients.1 version - Latest release: over 3 years ago - 126 stars on GitHub
Top 4.5% on proxy.golang.org
2 versions - Latest release: 2 months ago - 39 stars on GitHub
github.com/ewels/NGI-RNAseq v0.0.0-20260820142207-ee33c41492e7 removed
See the main fork of this repository here >>>2 versions - Latest release: 2 months ago - 39 stars on GitHub
Top 4.5% on proxy.golang.org
2 versions - Latest release: 2 months ago - 39 stars on GitHub
github.com/ewels/ngi-rnaseq v0.0.0-20260820142207-ee33c41492e7 removed
See the main fork of this repository here >>>2 versions - Latest release: 2 months ago - 39 stars on GitHub
Top 4.5% on proxy.golang.org
4 versions - Latest release: about 2 months ago - 433 stars on GitHub
github.com/NF-CORE/MODULES v0.0.0-20260911141721-56155f73713b removed
Repository to host tool-specific module files for the Nextflow DSL2 community!4 versions - Latest release: about 2 months ago - 433 stars on GitHub
Top 4.7% on proxy.golang.org
1 version - Latest release: over 2 years ago - 28 stars on GitHub
github.com/beiko-lab/arete v1.0.1
AMR/VF LGT focused bacterial genomics analysis workflow1 version - Latest release: over 2 years ago - 28 stars on GitHub
Top 5.0% on proxy.golang.org
13 versions - Latest release: over 5 years ago - 59 stars on GitHub
github.com/brwnj/covviz v1.3.3
Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotati...13 versions - Latest release: over 5 years ago - 59 stars on GitHub
Top 5.0% on proxy.golang.org
1 version - Latest release: over 7 years ago - 13 stars on GitHub
github.com/zuberlab/crispr-mageck-nf v1.0.0
Analyze CRISPR and shRNA functional genetic screening data1 version - Latest release: over 7 years ago - 13 stars on GitHub
Top 5.0% on proxy.golang.org
1 version - Latest release: over 7 years ago - 13 stars on GitHub
github.com/ZuberLab/crispr-mageck-nf v1.0.0
Analyze CRISPR and shRNA functional genetic screening data1 version - Latest release: over 7 years ago - 13 stars on GitHub
Top 5.1% on proxy.golang.org
1 version - Latest release: over 1 year ago - 13 stars on GitHub
github.com/nf-core/longraredisease v1.0.0-alpha
Long read sequencing pipeline to identify variants in patients with neurodevelopmental disorders1 version - Latest release: over 1 year ago - 13 stars on GitHub
Top 5.0% on proxy.golang.org
1 version - Latest release: 8 months ago - 6 stars on GitHub
github.com/jsmccabe1/sceptr v1.0.0
Continuous enrichment profiling for transcriptomes. Characterise how functional programmes are di...1 version - Latest release: 8 months ago - 6 stars on GitHub
Top 5.0% on proxy.golang.org
1 version - Latest release: 8 months ago - 6 stars on GitHub
github.com/jsmccabe1/SCEPTR v1.0.0
Continuous enrichment profiling for transcriptomes. Characterise how functional programmes are di...1 version - Latest release: 8 months ago - 6 stars on GitHub
Top 5.1% on proxy.golang.org
2 versions - Latest release: over 8 years ago - 251 stars on GitHub
github.com/assemblerflow/flowcraft v1.2.0
FlowCraft: a component-based pipeline composer for omics analysis using Nextflow. :whale::package:2 versions - Latest release: over 8 years ago - 251 stars on GitHub
Top 5.1% on proxy.golang.org
2 versions - Latest release: over 10 years ago - 21 stars on GitHub
github.com/Sanger-pathogens/companion v1.0.1
This repository has been archived, currently maintained version is at https://github.com/iii-comp...2 versions - Latest release: over 10 years ago - 21 stars on GitHub
Top 5.0% on proxy.golang.org
12 versions - Latest release: 7 months ago - 2 stars on GitHub
github.com/ccbr/champagne v0.6.0
CHromAtin iMmuno PrecipitAtion sequencinG aNalysis pipEline12 versions - Latest release: 7 months ago - 2 stars on GitHub
Top 5.0% on proxy.golang.org
12 versions - Latest release: 7 months ago - 2 stars on GitHub
github.com/CCBR/CHAMPAGNE v0.6.0
CHromAtin iMmuno PrecipitAtion sequencinG aNalysis pipEline12 versions - Latest release: 7 months ago - 2 stars on GitHub
Top 4.9% on proxy.golang.org
29 versions - Latest release: 22 days ago - 7 stars on GitHub
github.com/bigbio/quantms-utils v0.0.31
A python library with scripts and helpers classes for quantms workflow29 versions - Latest release: 22 days ago - 7 stars on GitHub
Top 9.6% on proxy.golang.org
2 versions - Latest release: over 5 years ago - 52 stars on GitHub
github.com/Gregor-Mendel-Institute/aradeepopsis v1.3.1
A versatile, fully open-source pipeline to extract phenotypic measurements from plant images2 versions - Latest release: over 5 years ago - 52 stars on GitHub
Top 9.6% on proxy.golang.org
2 versions - Latest release: over 5 years ago - 52 stars on GitHub
github.com/gregor-mendel-institute/aradeepopsis v1.3.1
A versatile, fully open-source pipeline to extract phenotypic measurements from plant images2 versions - Latest release: over 5 years ago - 52 stars on GitHub
Top 5.1% on proxy.golang.org
10 versions - Latest release: 4 months ago - 1 stars on GitHub
github.com/EBI-Metagenomics/assembly-analysis-pipeline v6.0.3+incompatible
MGnify Assembly Analysis Pipeline10 versions - Latest release: 4 months ago - 1 stars on GitHub
Top 5.0% on proxy.golang.org
1 version - Latest release: 11 months ago - 12 stars on GitHub
github.com/nf-core/magmap v1.0.0
Best-practice analysis pipeline for mapping reads to a (large) collections of genomes1 version - Latest release: 11 months ago - 12 stars on GitHub
Top 5.0% on proxy.golang.org
10 versions - Latest release: 4 months ago - 1 stars on GitHub
github.com/ebi-metagenomics/assembly-analysis-pipeline v6.0.3+incompatible
MGnify Assembly Analysis Pipeline10 versions - Latest release: 4 months ago - 1 stars on GitHub
Top 5.1% on proxy.golang.org
2 versions - Latest release: over 2 years ago - 31 stars on GitHub
github.com/sanger-tol/treeval v1.1.0
Pipelines for the production of Treeval data2 versions - Latest release: over 2 years ago - 31 stars on GitHub
Top 4.5% on proxy.golang.org
2 versions - Latest release: 3 months ago - 39 stars on GitHub
github.com/EWELS/nf-core-rnaseq v0.0.0-20260724145229-a4ed3abe93e0 removed
See the main fork of this repository here >>>2 versions - Latest release: 3 months ago - 39 stars on GitHub
Top 4.5% on proxy.golang.org
2 versions - Latest release: 2 months ago - 39 stars on GitHub
github.com/ewels/nf-core-rnaseq v0.0.0-20260827152654-c52c4508393b removed
See the main fork of this repository here >>>2 versions - Latest release: 2 months ago - 39 stars on GitHub
Top 6.7% on proxy.golang.org
13 versions - Latest release: 5 months ago - 63 stars on GitHub
github.com/goodwright/nextflow.py v0.13.1
Python wrapper around Nextflow.13 versions - Latest release: 5 months ago - 63 stars on GitHub
Top 4.5% on proxy.golang.org
2 versions - Latest release: about 2 months ago - 131 stars on GitHub
github.com/dockstore/dockstore v0.0.0-20260910141805-cc18aec966f2 removed
An app store for scientific workflows, tools, notebooks, and services2 versions - Latest release: about 2 months ago - 131 stars on GitHub
Top 5.1% on proxy.golang.org
8 versions - Latest release: over 1 year ago - 96 stars on GitHub
github.com/icbi-lab/nextNEOpi v1.5.1
nextNEOpi: a comprehensive pipeline for computational neoantigen prediction8 versions - Latest release: over 1 year ago - 96 stars on GitHub
Top 5.1% on proxy.golang.org
8 versions - Latest release: over 1 year ago - 96 stars on GitHub
github.com/ICBI-lab/nextneopi v1.5.1
nextNEOpi: a comprehensive pipeline for computational neoantigen prediction8 versions - Latest release: over 1 year ago - 96 stars on GitHub
Top 5.1% on proxy.golang.org
8 versions - Latest release: over 1 year ago - 96 stars on GitHub
github.com/icbi-lab/nextneopi v1.5.1
nextNEOpi: a comprehensive pipeline for computational neoantigen prediction8 versions - Latest release: over 1 year ago - 96 stars on GitHub
Top 5.6% on proxy.golang.org
5 versions - Latest release: about 8 years ago - 33 stars on GitHub
github.com/nf-core/lncpipe v0.2.3
UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets5 versions - Latest release: about 8 years ago - 33 stars on GitHub
Top 5.1% on proxy.golang.org
11 versions - Latest release: almost 4 years ago - 106 stars on GitHub
github.com/open2c/distiller-nf v0.3.4
A modular Hi-C mapping pipeline11 versions - Latest release: almost 4 years ago - 106 stars on GitHub
Top 5.6% on proxy.golang.org
2 versions - Latest release: over 7 years ago - 23 stars on GitHub
github.com/peterk87/sublime-nextflow v0.1.0-alpha.1
Nextflow workflow syntax highlighting and snippets for Sublime Text 42 versions - Latest release: over 7 years ago - 23 stars on GitHub
Top 5.7% on proxy.golang.org
10 versions - Latest release: 9 months ago - 66 stars on GitHub
github.com/fmalmeida/mpgap v3.2.3+incompatible
Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads10 versions - Latest release: 9 months ago - 66 stars on GitHub
Top 5.7% on proxy.golang.org
10 versions - Latest release: 9 months ago - 66 stars on GitHub
github.com/fmalmeida/MpGAP v3.2.3+incompatible
Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads10 versions - Latest release: 9 months ago - 66 stars on GitHub
Top 5.6% on proxy.golang.org
2 versions - Latest release: about 2 years ago - 3 stars on GitHub
github.com/zuberlab/crispr-process-nf v2.0.0+incompatible
Process CRISPR and shRNA functional genetic screening data2 versions - Latest release: about 2 years ago - 3 stars on GitHub
Top 5.6% on proxy.golang.org
2 versions - Latest release: about 2 years ago - 3 stars on GitHub
github.com/ZuberLab/crispr-process-nf v2.0.0+incompatible
Process CRISPR and shRNA functional genetic screening data2 versions - Latest release: about 2 years ago - 3 stars on GitHub
Top 5.6% on proxy.golang.org
2 versions - Latest release: over 10 years ago - 21 stars on GitHub
github.com/sanger-pathogens/companion v1.0.1
This repository has been archived, currently maintained version is at https://github.com/iii-comp...2 versions - Latest release: over 10 years ago - 21 stars on GitHub
Top 5.6% on proxy.golang.org
11 versions - Latest release: almost 4 years ago - 105 stars on GitHub
github.com/mirnylab/distiller-nf v0.3.4
A modular Hi-C mapping pipeline11 versions - Latest release: almost 4 years ago - 105 stars on GitHub
Top 5.6% on proxy.golang.org
17 versions - Latest release: 11 months ago - 37 stars on GitHub
github.com/guigolab/grape-nf v1.3.2
An automated RNA-seq pipeline using Nextflow17 versions - Latest release: 11 months ago - 37 stars on GitHub
Top 5.6% on proxy.golang.org
6 versions - Latest release: almost 12 years ago - 19 stars on GitHub
github.com/cbcrg/piper-nf v1.4.0
RNA mapping pipeline6 versions - Latest release: almost 12 years ago - 19 stars on GitHub
Top 5.6% on proxy.golang.org
5 versions - Latest release: almost 12 years ago - 2 stars on GitHub
github.com/cbcrg/grape-nf v1.5.2
Yet another Grape RNA-Seq analyses pipeline5 versions - Latest release: almost 12 years ago - 2 stars on GitHub
Top 5.6% on proxy.golang.org
19 versions - Latest release: over 2 years ago - 71 stars on GitHub
github.com/LUMC/pytest-workflow v2.1.0+incompatible
Configure workflow/pipeline tests using yaml files.19 versions - Latest release: over 2 years ago - 71 stars on GitHub
Top 9.6% on proxy.golang.org
20 versions - Latest release: 9 months ago - 108 stars on GitHub
github.com/fmalmeida/bacannot v3.4.4+incompatible
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with inter...20 versions - Latest release: 9 months ago - 108 stars on GitHub
Top 6.7% on proxy.golang.org
5 versions - Latest release: over 2 years ago - 31 stars on GitHub
github.com/euro-bioimaging/batchconvert v0.0.4
A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections t...5 versions - Latest release: over 2 years ago - 31 stars on GitHub
Top 6.7% on proxy.golang.org
5 versions - Latest release: over 2 years ago - 31 stars on GitHub
github.com/Euro-BioImaging/BatchConvert v0.0.4
A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections t...5 versions - Latest release: over 2 years ago - 31 stars on GitHub
Top 5.6% on proxy.golang.org
1 version - Latest release: about 8 years ago - 137 stars on GitHub
github.com/crg-cnag/callings-nf v1.0.0
GATK RNA-Seq Variant Calling in Nextflow1 version - Latest release: about 8 years ago - 137 stars on GitHub
Top 5.6% on proxy.golang.org
1 version - Latest release: about 8 years ago - 137 stars on GitHub
github.com/CRG-CNAG/CalliNGS-NF v1.0.0
GATK RNA-Seq Variant Calling in Nextflow1 version - Latest release: about 8 years ago - 137 stars on GitHub
Top 5.1% on proxy.golang.org
1 version - Latest release: about 8 years ago - 137 stars on GitHub
github.com/CRG-CNAG/CalLINGS-NF v1.0.0
GATK RNA-Seq Variant Calling in Nextflow1 version - Latest release: about 8 years ago - 137 stars on GitHub
Top 9.0% on proxy.golang.org
145 versions - Latest release: 4 months ago - 247 stars on GitHub
github.com/nvuillam/npm-groovy-lint v18.0.0+incompatible 💰
Lint, format and auto-fix your Groovy / Jenkinsfile / Gradle files using command line145 versions - Latest release: 4 months ago - 247 stars on GitHub
Top 5.1% on proxy.golang.org
16 versions - Latest release: about 2 months ago - 153 stars on GitHub
github.com/ebi-metagenomics/emg-viral-pipeline v4.0.0+incompatible
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemb...16 versions - Latest release: about 2 months ago - 153 stars on GitHub
Top 9.6% on proxy.golang.org
7 versions - Latest release: over 2 years ago - 37 stars on GitHub
github.com/fmalmeida/ngs-preprocess v2.7.1+incompatible
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies7 versions - Latest release: over 2 years ago - 37 stars on GitHub
Top 5.1% on proxy.golang.org
16 versions - Latest release: about 2 months ago - 153 stars on GitHub
github.com/eBI-Metagenomics/emg-viral-pipeline v4.0.0+incompatible
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemb...16 versions - Latest release: about 2 months ago - 153 stars on GitHub
Top 5.1% on proxy.golang.org
16 versions - Latest release: about 2 months ago - 153 stars on GitHub
github.com/EBI-Metagenomics/emg-viral-pipeline v4.0.0+incompatible
VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemb...16 versions - Latest release: about 2 months ago - 153 stars on GitHub
Top 5.6% on proxy.golang.org
19 versions - Latest release: over 2 years ago - 71 stars on GitHub
github.com/lumc/pytest-workflow v2.1.0+incompatible
Configure workflow/pipeline tests using yaml files.19 versions - Latest release: over 2 years ago - 71 stars on GitHub
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docker
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pacbio
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metagenomics
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