Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "proteins" keyword

networker 0.2.3
a python package to generate and analyse protein similarity networks
5 versions - Latest release: about 2 years ago - 1 dependent repositories - 12 downloads last month - 1 stars on GitHub - 1 maintainer
Top 9.4% on pypi.org
molecularnodes 4.0.12
Toolbox for molecular animations with Blender and Geometry Nodes.
8 versions - Latest release: about 2 months ago - 1 dependent package - 1 dependent repositories - 290 downloads last month - 798 stars on GitHub - 1 maintainer
rotamerconvolvemd 1.3.2
Analysis of spin label distances over structural ensembles
5 versions - Latest release: almost 4 years ago - 1 dependent repositories - 47 downloads last month - 6 stars on GitHub - 2 maintainers
pykvfinder 0.6.13
Python package to detect and characterize cavities in biomolecular structures
30 versions - Latest release: 13 days ago - 1 dependent package - 1 dependent repositories - 2.01 thousand downloads last month - 19 stars on GitHub - 1 maintainer
protein-metamorphisms-is 1.1.0
Comprehensive Python Module for Protein Data Management: Designed for streamlined integration and...
1 version - Latest release: 3 months ago - 15 downloads last month - 2 stars on GitHub - 1 maintainer
Top 3.7% on pypi.org
pypdb 2.4
A Python wrapper for the RCSB Protein Data Bank (PDB) API
19 versions - Latest release: 7 days ago - 6 dependent packages - 21 dependent repositories - 1.44 thousand downloads last month - 289 stars on GitHub - 1 maintainer
kif 0.3.4
Python package for MD simulation analysis
8 versions - Latest release: 3 months ago - 41 downloads last month - 22 stars on GitHub - 1 maintainer
greedyfas 1.18.11
A tool to compare protein feature architectures
94 versions - Latest release: 2 months ago - 1 dependent package - 1 dependent repositories - 834 downloads last month - 4 stars on GitHub - 1 maintainer
Top 2.8% on pypi.org
freesasa 2.2.1
Calculate solvent accessible surface areas of proteins
27 versions - Latest release: 6 months ago - 11 dependent packages - 22 dependent repositories - 5.02 thousand downloads last month - 1 maintainer
bio2bel-kegg 0.3.0
A package for converting KEGG gene sets into BEL
22 versions - Latest release: over 3 years ago - 1 dependent repositories - 213 downloads last month - 13 stars on GitHub - 2 maintainers
deepinteract 1.0.9
A geometric deep learning pipeline for predicting protein interface contacts.
9 versions - Latest release: over 2 years ago - 1 dependent repositories - 41 downloads last month - 52 stars on GitHub - 1 maintainer
proteinworkshop 0.2.5 💰
Benchmarking framework for protein representation learning. Includes a large number of pre-traini...
10 versions - Latest release: 5 months ago - 1 dependent repositories - 83 downloads last month - 146 stars on GitHub - 1 maintainer
serd 0.1.2
A Python package to detect solvent-exposed residues of a target biomolecule.
3 versions - Latest release: over 1 year ago - 1 dependent repositories - 67 downloads last month - 4 stars on GitHub - 1 maintainer
peptidy 0.0.1
A Python library that converts peptide sequences to matrices for machine learning.
1 version - Latest release: 3 months ago - 24 downloads last month - 0 stars on GitHub - 1 maintainer
llama-index-readers-pdb 0.1.3
llama-index readers pdb integration
5 versions - Latest release: 3 months ago - 22 downloads last month - 3,390 stars on GitHub - 1 maintainer
ec-number-prediction 0.0.4
ec_number_prediction
4 versions - Latest release: 3 months ago - 29 downloads last month - 2 stars on GitHub - 1 maintainer
latticepy 0.1.4
A package for simulating molecules on a lattice.
4 versions - Latest release: 8 months ago - 19 downloads last month - 2 stars on GitHub - 1 maintainer
geom3d 0.0
Geometric Modeling on 3D Data
1 version - Latest release: 10 months ago - 29 downloads last month - 85 stars on GitHub - 1 maintainer
qiskit-xyz2pdb 0.1.2
A simple Python package to convert XYZ files from Qiskit output into PDB structures
3 versions - Latest release: 11 months ago - 20 downloads last month - 0 stars on GitHub - 1 maintainer
conformine 0.0.1b14 removed
ConforMine, a predictor of conformational variability from amino acid sequence
4 versions - Latest release: about 1 year ago - 73 downloads last month - 1 maintainer
rrmscorer 1.0.9
RRM-RNA score predictor
5 versions - Latest release: 7 months ago - 26 downloads last month - 1 maintainer
clumps-ptm 0.0.6
CLUMPS-PTM driver gene discovery using 3D protein structure (Getz Lab).
7 versions - Latest release: about 1 year ago - 87 downloads last month - 6 stars on GitHub - 1 maintainer
braid-mrf 1.0.9
Predicting protein complexes
3 versions - Latest release: almost 2 years ago - 13 downloads last month - 2 stars on GitHub - 1 maintainer
protviewer 0.0.6
A web-based tool to visualize activities in proteins
6 versions - Latest release: almost 2 years ago - 1 dependent repositories - 23 downloads last month - 0 stars on GitHub - 1 maintainer
seqprops 1.0.3
Sequential properties PyPI package
4 versions - Latest release: about 1 year ago - 1 dependent repositories - 30 downloads last month - 1 stars on GitHub - 1 maintainer
protein-glm 0.0.2
Protein generative model with General Language Model PreTraining (GLM)
1 version - Latest release: about 2 years ago - 1 dependent repositories - 17 downloads last month - 1 maintainer
siteinterlock 0.0.1dev0
SiteInterlock tools for docking pose scoring
1 version - Latest release: 9 months ago - 1 dependent repositories - 1 maintainer
pyprot 0.1-alpha
Python Proteins
1 version - Latest release: almost 7 years ago - 1 dependent repositories - 9 downloads last month - 8 stars on GitHub - 1 maintainer
pyprotein 0.0.2
package for protein IEP calculation etc.
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 22 downloads last month - 1 stars on GitHub - 1 maintainer
protlearn 0.0.3
A Python package for extracting protein sequence features
3 versions - Latest release: about 3 years ago - 1 dependent repositories - 130 downloads last month - 58 stars on GitHub - 1 maintainer
progen-transformer 0.0.36
Protein Generation (ProGen)
29 versions - Latest release: almost 3 years ago - 1 dependent repositories - 195 downloads last month - 104 stars on GitHub - 1 maintainer
pdbprocessor 0.1.1
Simple PDB file processing tool
3 versions - Latest release: over 2 years ago - 1 dependent repositories - 19 downloads last month - 0 stars on GitHub - 1 maintainer
pdb-prep 0.1.0.0
pdb utils
3 versions - Latest release: about 4 years ago - 1 dependent repositories - 15 downloads last month - 0 stars on GitHub - 2 maintainers
molkitten 0.0.7
A molecule reading/writing and manipulation package.
2 versions - Latest release: almost 2 years ago - 1 dependent repositories - 6 downloads last month - 192 stars on GitHub - 2 maintainers
molecupy 1.1.0
A Python molecular modeller with PDB parsing.
11 versions - Latest release: over 7 years ago - 1 dependent package - 2 dependent repositories - 187 downloads last month - 1 maintainer
Top 5.7% on pypi.org
moleculekit 1.8.32
A molecule reading/writing and manipulation package.
196 versions - Latest release: 12 days ago - 1 dependent package - 11 dependent repositories - 970 downloads last month - 192 stars on GitHub - 2 maintainers
mol2grid 0.1.4
Python package to insert a ligand in a 3D grid, created based on its respective receptor,...
5 versions - Latest release: about 3 years ago - 1 dependent repositories - 142 downloads last month - 1 maintainer
idpflex 0.1.8
Analysis of intrinsically disordered proteins by comparing MD simulations to Small Angle Scatteri...
8 versions - Latest release: over 5 years ago - 1 dependent repositories - 23 downloads last month - 3 stars on GitHub - 1 maintainer
geometric-vector-perceptron 0.0.14 💰
Geometric Vector Perceptron - Pytorch
11 versions - Latest release: almost 3 years ago - 1 dependent repositories - 29 downloads last month - 71 stars on GitHub - 1 maintainer
geometricus 0.3.0
Fast, structure-based, alignment-free protein embedding
6 versions - Latest release: about 2 years ago - 1 dependent repositories - 82 downloads last month - 33 stars on GitHub - 1 maintainer
genotype_network 0.1.6 💰
A package for constructing and analyzing protein genotype networks in Python.
3 versions - Latest release: over 8 years ago - 2 dependent repositories - 27 downloads last month - 1 stars on GitHub - 1 maintainer
farseernmr 2.0.0.dev0
A software suite for automatic treatment, analysis and plotting of large and multivariable datase...
1 version - Latest release: over 4 years ago - 1 dependent repositories - 14 downloads last month - 10 stars on GitHub - 1 maintainer
dips-plus 1.1.0
The Enhanced Database of Interacting Protein Structures for Interface Prediction
11 versions - Latest release: over 2 years ago - 1 dependent repositories - 30 downloads last month - 41 stars on GitHub - 1 maintainer
ddpm-proteins 0.0.11
Denoising Diffusion Probabilistic Models - for Proteins - Pytorch
10 versions - Latest release: about 2 years ago - 1 dependent repositories - 87 downloads last month - 132 stars on GitHub - 1 maintainer
correlationplus 0.2.1
A Python package to calculate, visualize and analyze correlations of proteins.
9 versions - Latest release: over 2 years ago - 2 dependent repositories - 100 downloads last month - 31 stars on GitHub - 2 maintainers
chemw 0.3.5
Calculates the Molecular Weight, to the appropriate significant digits, from a string of an arbit...
28 versions - Latest release: almost 2 years ago - 1 dependent package - 7 dependent repositories - 595 downloads last month - 3 stars on GitHub - 1 maintainer
thppred 1.1
A tool for prediction of therapeutic peptides
2 versions - Latest release: 9 months ago - 19 downloads last month - 2 stars on GitHub - 2 maintainers
candiy-lemon 0.3.0
Mine data from the PDB in minutes
3 versions - Latest release: almost 4 years ago - 1 dependent repositories - 129 downloads last month - 51 stars on GitHub - 1 maintainer
bio2bel-uniprot 0.0.2
A package for downloading, parsing, storing, and serializing UniProt
2 versions - Latest release: over 5 years ago - 1 dependent repositories - 37 downloads last month - 0 stars on GitHub - 1 maintainer
bio2bel-interpro 0.2.1
A package for converting InterPro to BEL
3 versions - Latest release: about 5 years ago - 1 dependent repositories - 23 downloads last month - 0 stars on GitHub - 1 maintainer
bio2bel-expasy 0.2.0
A package for parsing and storing the ExPASy Enzyme Database
2 versions - Latest release: over 5 years ago - 13 downloads last month - 0 stars on GitHub - 1 maintainer
b2btools 3.0.7
bio2Byte software suite to predict protein biophysical properties from their amino-acid sequences
47 versions - Latest release: 28 days ago - 402 downloads last month - 2 maintainers
Top 5.5% on pypi.org
atomium 1.0.11 💰
A molecular modeller and file parser.
31 versions - Latest release: over 2 years ago - 1 dependent package - 7 dependent repositories - 848 downloads last month - 101 stars on GitHub - 1 maintainer
pdbsearch 0.4.0 💰
A library for searching for PDB structures using the official APIs.
4 versions - Latest release: almost 2 years ago - 1 dependent repositories - 29 downloads last month - 1 stars on GitHub - 1 maintainer
equiformer-pytorch 0.5.3
Equiformer - SE3/E3 Graph Attention Transformer for Molecules and Proteins
55 versions - Latest release: 4 months ago - 202 downloads last month - 225 stars on GitHub - 1 maintainer
aaindex 1.1.2
A lightweight Python software package for accessing the data in the various AAIndex databases, wh...
10 versions - Latest release: 6 months ago - 3 dependent packages - 1 dependent repositories - 297 downloads last month - 7 stars on GitHub - 1 maintainer
autoclasswrapper 1.5.1
AutoClassWrapper: a Python wrapper for AutoClass C classification.
27 versions - Latest release: almost 5 years ago - 1 dependent repositories - 94 downloads last month - 3 stars on GitHub - 1 maintainer
biometal 0.1.0
Tools for dealing with metal binding sites.
1 version - Latest release: about 6 years ago - 1 dependent repositories - 13 downloads last month - 1 maintainer
pfamserver 0.0.15 removed
A python service to query the PFAM database through a JSON api.
15 versions - Latest release: about 8 years ago - 2 dependent repositories - 3 stars on GitHub
Related Keywords
bioinformatics 18 chemistry 11 protein-structure 8 machine-learning 8 python 7 biology 7 pdb 7 deep-learning 7 protein 6 structural-biology 6 deep learning 6 molecules 5 biochemistry 5 artificial intelligence 5 Biological Expression Language 4 peptides 4 biological-expression-language 4 Systems Biology 4 BEL 4 structural biology 4 Networks Biology 3 equivariance 3 molecular-modeling 3 molecule 3 networks-biology 3 systems-biology 3 artificial-intelligence 3 transformers 3 amino-acids 2 InterPro 2 protein-domains 2 attention mechanism 2 graph 2 visualization 2 protein-protein-interaction 2 datasets 2 clustering 2 machine learning 2 drug-discovery 2 molecular-simulation 2 bio2byte 2 b2bTools 2 RNA 2 fasta 2 bio-informatics 2 python-package 2 uniprot 2 biomolecules 2 protein-data-bank 2 MMCIF 2 PDB 2 protein-folding 2 proteomics 2 analysis 2 protein-families 2 enzymes 2 networks 2 biochemical properties 1 md 1 neutron 1 physiochemical properties 1 sans 1 saxs 1 lmfit 1 intrinsically-disordered 1 scattering 1 pypi 1 protein engineering 1 simulations 1 artficial-intelligence 1 biomolecule 1 alignment-free 1 aaindex 1 feature-engineering 1 invariant-features 1 Proteins 1 PHREEQC 1 profiling 1 score-matrix 1 structure-prediction 1 substitutions 1 protein-sequence-analysis 1 pfam 1 amino acids 1 preprocessing 1 feature engineering 1 dimensionality reduction 1 feature-extraction 1 multiple-sequence-alignment 1 protein language model 1 metals 1 genes 1 pdb-files 1 autoclass 1 RSCB 1 pysar 1 protein structure prediction 1 idpflex 1 molecular 1 mineral 1