Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "basecalling" keyword

yanagiba 1.0.0
Filter short or low quality Oxford Nanopore reads which have been basecalled with Albacore.
2 versions - Latest release: over 6 years ago - 1 dependent repositories - 49 downloads last month - 1 stars on GitHub - 1 maintainer
ont-bonito-cuda111 0.5.3
A PyTorch Basecaller for Oxford Nanopore Reads
11 versions - Latest release: about 2 years ago - 1 dependent repositories - 38 downloads last month - 378 stars on GitHub - 1 maintainer
Top 8.9% on pypi.org
ont-bonito 0.7.3
A PyTorch Basecaller for Oxford Nanopore Reads
50 versions - Latest release: 6 months ago - 1 dependent repositories - 476 downloads last month - 378 stars on GitHub - 1 maintainer
ont-bonito-cuda113 0.5.3
A PyTorch Basecaller for Oxford Nanopore Reads
6 versions - Latest release: about 2 years ago - 1 dependent repositories - 29 downloads last month - 378 stars on GitHub - 1 maintainer
pyguppyclient 0.1.0
Python client library for Guppy
11 versions - Latest release: about 3 years ago - 1 dependent package - 1 dependent repositories - 74 downloads last month - 30 stars on GitHub - 1 maintainer
ont-guppy-duplex-pipeline 1.0.3
Oxford Nanopore Technologies duplex pipeline scripts for guppy
4 versions - Latest release: over 1 year ago - 1 dependent repositories - 41 downloads last month - 1 maintainer
Top 7.8% on pypi.org
ont-remora 3.1.0
Nanopore methylation/modified base calling detached from basecalling
14 versions - Latest release: 6 months ago - 3 dependent repositories - 543 downloads last month - 139 stars on GitHub - 1 maintainer
Top 7.4% on pypi.org
megalodon 2.5.0
Nanopore base calling augmentation.
24 versions - Latest release: about 2 years ago - 1 dependent package - 2 dependent repositories - 329 downloads last month - 189 stars on GitHub - 1 maintainer
Related Keywords
nanopore 6 pytorch 3 guppy 3 Albacore 1 Nanopore 1 genome 1 DNA 1 sequencing 1 python 1 duplex 1 methylation 1 epigenetics 1 variant-calling 1