Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "Nanopore" keyword
yanagiba 1.0.0
Filter short or low quality Oxford Nanopore reads which have been basecalled with Albacore.2 versions - Latest release: over 6 years ago - 1 dependent repositories - 49 downloads last month - 1 stars on GitHub - 1 maintainer
read5-ont 1.2.4
Wrapper to read fast5 and pod5 files.4 versions - Latest release: 3 months ago - 17 downloads last month - 8 stars on GitHub - 1 maintainer
read5 1.2.4
Wrapper to read fast5, slow5, blow5 and pod5 files.10 versions - Latest release: 3 months ago - 1 dependent package - 52 downloads last month - 8 stars on GitHub - 1 maintainer
toulligqc 2.5.7
A post sequencing QC tool for Oxford Nanopore sequencers35 versions - Latest release: about 1 month ago - 1 dependent repositories - 171 downloads last month - 72 stars on GitHub - 1 maintainer
ultra-bioinformatics 0.0.4
Splice aligner of long transcriptomic reads to genome.14 versions - Latest release: over 2 years ago - 2 dependent repositories - 166 downloads last month - 58 stars on GitHub - 1 maintainer
nanosim-h 1.1.0.4
NanoSim-H: a simulator of Oxford Nanopore reads; a fork of NanoSim.5 versions - Latest release: almost 6 years ago - 1 dependent repositories - 25 downloads last month - 16 stars on GitHub - 1 maintainer
lafite 1.0.2
Nanopore Direct RNA-seq Transcriptome Assembly4 versions - Latest release: over 1 year ago - 1 dependent repositories - 16 downloads last month - 3 stars on GitHub - 1 maintainer
ngspeciesid 0.3.0
Reconstructs viral consensus sequences from a set of ONT reads.19 versions - Latest release: 12 months ago - 1 dependent repositories - 121 downloads last month - 43 stars on GitHub - 1 maintainer
sequana-nanomerge 1.5.0
Merge barcoded or non barcoded fastq files generated by Nanopore runs6 versions - Latest release: 6 months ago - 37 downloads last month - 1 stars on GitHub - 1 maintainer
isonclust 0.0.6
De novo clustering of long-read transcriptome reads.7 versions - Latest release: over 4 years ago - 1 dependent repositories - 92 downloads last month - 42 stars on GitHub - 1 maintainer
Related Keywords
Oxford
3
bioinformatics
3
ONT
3
oxford-nanopore
3
Technologies
2
long
2
transcript
2
slow5
2
raw-data
2
oxford-nanopore-data
2
ont
2
blow5
2
wrapper
2
raw data
2
Oxford Nanopore Technologies
2
pod5
2
fast5
2
read5
2
long-read
2
nanopore
2
transcriptome
2
transcriptome-assembly
1
viral
1
direct-rna-sequencing
1
sequeces
1
Albacore
1
reads
1
snakemake
1
sequana
1
merge
1
barcode
1
Iso-Seq
1
CCS
1
PacBio
1
clustering
1
pacbio-iso-seq
1
basecalling
1
genome
1
DNA
1
sequencing
1
MinION
1
QC
1
report
1
read
1
error
1
correction
1
alignment
1
long-read-sequencing
1
strobemers
1
simulation
1
ngs
1
read-simulation
1
DRS
1