pypi.org "methylation" keyword
View the packages on the pypi.org package registry that are tagged with the "methylation" keyword.
cemba-data 1.6.9
Pipelines for single nucleus methylome and multi-omic dataset.55 versions - Latest release: almost 2 years ago - 1 dependent repositories - 1.05 thousand downloads last month - 17 stars on GitHub - 1 maintainer
pyxfr 0.6.1
The Transferase Python API2 versions - Latest release: 11 days ago - 514 downloads last month - 2 stars on GitHub - 1 maintainer
methscan 1.1.0
a command line tool for Single-Cell Analysis of Methylation data4 versions - Latest release: 6 months ago - 234 downloads last month - 11 stars on GitHub - 1 maintainer
methtuple 1.8.0
methtuple4 versions - Latest release: about 3 years ago - 3 dependent repositories - 155 downloads last month - 12 stars on GitHub - 1 maintainer
methylpurify 2.0-20141116
Methylation subclone detection4 versions - Latest release: over 10 years ago - 1 dependent repositories - 89 downloads last month - 1 maintainer
bismarkplot 1.3.2
Analytical framework for BS-seq data comparison and visualization17 versions - Latest release: over 1 year ago - 491 downloads last month - 8 stars on GitHub - 1 maintainer
methylgrapher 0.2.0
WGBS data analysis for genome graph5 versions - Latest release: 2 days ago - 108 downloads last month - 11 stars on GitHub - 1 maintainer
methpype 1.0.6 💰
Python-based Illumina methylation array processing and analysis software composite package6 versions - Latest release: over 4 years ago - 1 dependent repositories - 224 downloads last month - 36 stars on GitHub - 1 maintainer
pylluminator 0.1
Tool to preprocess, analyze and visualize DNA methylation data from Illumina micro-arrays1 version - Latest release: 30 days ago - 145 downloads last month - 2 stars on GitHub - 1 maintainer
methylbert 2.0.2
A Transformer-based model for read-level DNA methylation pattern identification and tumour deconv...7 versions - Latest release: about 1 month ago - 300 downloads last month - 25 stars on GitHub - 1 maintainer
astair 3.3.2
A tool for the analysis of bisulfite-free and base-resolution sequencing data generated with TET ...9 versions - Latest release: almost 5 years ago - 434 downloads last month - 1 maintainer
bsxplorer 1.1.0
Analytical framework for BS-seq data comparison and visualization9 versions - Latest release: 9 months ago - 369 downloads last month - 8 stars on GitHub - 1 maintainer
mepylome 0.8.10
Python package for processing Infinum DNA methylation arrays45 versions - Latest release: 6 days ago - 1.78 thousand downloads last month - 5 stars on GitHub - 1 maintainer
methylprep 1.7.1 💰
Python-based Illumina methylation array preprocessing software54 versions - Latest release: over 2 years ago - 2 dependent repositories - 1.63 thousand downloads last month - 36 stars on GitHub - 1 maintainer
cpgtools 2.0.3
Tools to analyze and visualize DNA methylation data24 versions - Latest release: 5 months ago - 1 dependent repositories - 637 downloads last month - 40 stars on GitHub - 1 maintainer
aric 1.0.1
ARIC: Accurate and robust inference of cell type proportions from bulk gene expression or DNA met...4 versions - Latest release: about 1 year ago - 110 downloads last month - 2 stars on GitHub - 1 maintainer
methylmap 0.5.11
Plotting tool for population scale nucleotide modifications.16 versions - Latest release: 3 months ago - 322 downloads last month - 17 stars on GitHub - 1 maintainer
methylize 1.1.1 💰
EWAS Analysis software for Illumina methylation arrays12 versions - Latest release: almost 3 years ago - 1 dependent repositories - 477 downloads last month - 16 stars on GitHub - 1 maintainer
deepcpg 1.0.7
Deep learning for predicting CpG methylation8 versions - Latest release: over 6 years ago - 1 dependent repositories - 313 downloads last month - 143 stars on GitHub - 1 maintainer
ccsmeth 0.5.0
Detecting DNA methylation from PacBio CCS reads11 versions - Latest release: about 1 year ago - 1 dependent repositories - 249 downloads last month - 63 stars on GitHub - 1 maintainer
pyllelic 0.4.8
Analysis of allele-specific methylation in bisulfite DNA sequencing.24 versions - Latest release: over 1 year ago - 1 dependent repositories - 728 downloads last month - 6 stars on GitHub - 1 maintainer
Top 7.8% on pypi.org
17 versions - Latest release: 7 months ago - 3 dependent repositories - 720 downloads last month - 168 stars on GitHub - 1 maintainer
ont-remora 3.3.0
Nanopore methylation/modified base calling detached from basecalling17 versions - Latest release: 7 months ago - 3 dependent repositories - 720 downloads last month - 168 stars on GitHub - 1 maintainer
bsbolt 1.6.0
Bisulfite Sequencing Processing Platform27 versions - Latest release: about 2 years ago - 1 dependent repositories - 1.98 thousand downloads last month - 21 stars on GitHub - 1 maintainer
deepsignal2 0.1.3
A deep-learning method for detecting DNA methylation state from Oxford Nanopore sequencing reads4 versions - Latest release: almost 3 years ago - 1 dependent repositories - 111 downloads last month - 28 stars on GitHub - 1 maintainer
pyncbi 0.1.6
Simple API for Python Integration with NCBI9 versions - Latest release: almost 3 years ago - 1 dependent repositories - 75 downloads last month - 3 stars on GitHub - 1 maintainer
bam2tensor 1.0.1
Bam2Tensor10 versions - Latest release: about 1 year ago - 342 downloads last month - 1 stars on GitHub - 1 maintainer
methylverse 0.0.10
Python package for methylation data2 versions - Latest release: 24 days ago - 0 stars on GitHub - 1 maintainer
methylcheck 0.8.5 💰
Quality Control (QC), Visualization/plotting, and postprocessing software for Illumina methylatio...32 versions - Latest release: almost 3 years ago - 2 dependent packages - 1 dependent repositories - 939 downloads last month - 11 stars on GitHub - 1 maintainer
hmmcdr 0.3.0
Find CDR locations using bedmethyl file and CenSat annotations. (REQUIRES BEDTOOLS INSTALLED)11 versions - Latest release: 3 months ago - 491 downloads last month - 1 stars on GitHub - 1 maintainer
nanomix 0.2.0
Methods for cell type deconvolution from Oxford Nanopore methylation calling3 versions - Latest release: almost 2 years ago - 129 downloads last month - 11 stars on GitHub - 1 maintainer
mbin 1.1.1
mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads3 versions - Latest release: about 7 years ago - 1 dependent repositories - 71 downloads last month - 25 stars on GitHub - 1 maintainer
bpforms 0.0.16
Unambiguous representation of modified DNA, RNA, and proteins12 versions - Latest release: almost 5 years ago - 7 dependent repositories - 265 downloads last month - 6 stars on GitHub - 2 maintainers
scbs 0.6.8
command line tool for the analysis of single-cell bisulfite-sequencing data13 versions - Latest release: about 1 year ago - 200 downloads last month - 10 stars on GitHub - 1 maintainer
deepsignal 0.2.0
A deep-learning method for detecting DNA methylation state from Oxford Nanopore sequencing reads11 versions - Latest release: about 3 years ago - 1 dependent repositories - 222 downloads last month - 112 stars on GitHub - 1 maintainer
deepsignal-plant 0.1.6
A deep-learning method for detecting DNA methylation state from Oxford Nanopore sequencing reads ...7 versions - Latest release: almost 3 years ago - 1 dependent repositories - 217 downloads last month - 57 stars on GitHub - 1 maintainer
methylsuite 1.4.0 💰
Python-based Illumina methylation array processing and analysis software composite package6 versions - Latest release: almost 3 years ago - 1 dependent repositories - 255 downloads last month - 36 stars on GitHub - 1 maintainer
logloss-beraf 0.7
A tool for costructing a limited sized diagnostic panels based on methylation data3 versions - Latest release: over 7 years ago - 1 dependent repositories - 119 downloads last month - 1 maintainer
methylink 0.6.0
methylink is a tool to link methylation tags between SAM/BAM files.6 versions - Latest release: over 1 year ago - 161 downloads last month - 1 stars on GitHub - 1 maintainer
Related Keywords
epigenetics
14
bioinformatics
8
illumina
7
dna
7
nanopore
6
data
6
processing
5
single-cell
4
neural network
4
biology
4
dna-methylation
4
methylation-analysis
4
bismark
3
plot
3
WGBS
3
deconvolution
3
bisulfite
3
genomics
3
sequencing
3
nanopore-sequencing
2
learning
2
visualization
2
plotting
2
bs-seq
2
RRBS
2
single-cell-rna-seq
2
single-cell-methylation
2
dna-methylation-data
2
single cell bisulfite sequencing
2
single cell
2
python
2
wgbs
2
bisulfite-sequencing
2
epigenomics
2
EPIC
2
DNA methylation
2
epigenetic-data
1
ncbi
1
analytics
1
database
1
machine-learning
1
450k
1
850k
1
centromere
1
data database
1
api
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dna-alignment
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basecalling
1
python3
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academia
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DNA sequencing
1
pacbio
1
deeplearning
1
Methylation
1
cli
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panel
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diagnostic
1
machine
1
model
1
pytorch
1
plant
1
tensorflow
1
rna
1
post-translational-modification
1
post-transcriptional-regulation
1
dna-damage
1
crosslinks
1
phosphorylation
1
proteoform
1
post-translational modification
1
post-transcriptional modification
1
protein
1
RNA
1
DNA
1
metagenomic
1
binning
1
mbin
1
Illumina
1
modification
1
caller
1
cytosine
1
taps
1
TAPS
1
tumour
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language-model
1
bert
1
microarray-data-analysis
1
DMR
1
microarray
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genome-graph
1
alignment
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cancer
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methyl-seq
1
methylome
1
snmct-seq
1
snmc-seq2
1
snmc-seq
1
pipeline
1
deep-neural-networks
1
Deep
1