pypi.org "sequencing" keyword
View the packages on the pypi.org package registry that are tagged with the "sequencing" keyword.
Top 1.9% on pypi.org
45 versions - Latest release: about 1 month ago - 23 dependent packages - 23 dependent repositories - 19 thousand downloads last month - 1,389 stars on GitHub - 3 maintainers
galaxy-util 24.2.3
Galaxy generic utilities45 versions - Latest release: about 1 month ago - 23 dependent packages - 23 dependent repositories - 19 thousand downloads last month - 1,389 stars on GitHub - 3 maintainers
Top 1.6% on pypi.org
70 versions - Latest release: about 1 month ago - 16 dependent packages - 43 dependent repositories - 19 thousand downloads last month - 1,389 stars on GitHub - 3 maintainers
galaxy-tool-util 24.2.3
Galaxy tool and tool dependency utilities70 versions - Latest release: about 1 month ago - 16 dependent packages - 43 dependent repositories - 19 thousand downloads last month - 1,389 stars on GitHub - 3 maintainers
ratio-genetic-py 0.4.0
Python bindings for the ratio-genetic Rust crate.3 versions - Latest release: 3 months ago - 1 dependent package - 379 downloads last month - 1 maintainer
seq-pigeon 0.4.3
Pipeline tool for NGS data17 versions - Latest release: over 4 years ago - 1 dependent repositories - 289 downloads last month - 963 stars on GitHub - 1 maintainer
methtuple 1.8.0
methtuple4 versions - Latest release: about 3 years ago - 3 dependent repositories - 155 downloads last month - 12 stars on GitHub - 1 maintainer
genbiox 0.3.1
A Comprehensive Bioinformatics Package for Genome Analysis4 versions - Latest release: almost 2 years ago - 163 downloads last month - 0 stars on GitHub - 1 maintainer
Top 2.0% on pypi.org
48 versions - Latest release: 2 months ago - 7 dependent packages - 74 dependent repositories - 19 thousand downloads last month - 1,162 stars on GitHub - 1 maintainer
multiqc 1.27.1
Create aggregate bioinformatics analysis reports across many samples and tools48 versions - Latest release: 2 months ago - 7 dependent packages - 74 dependent repositories - 19 thousand downloads last month - 1,162 stars on GitHub - 1 maintainer
xron 1.0.7
A deep neural network basecaller for nanopore sequencing.10 versions - Latest release: over 1 year ago - 242 downloads last month - 21 stars on GitHub - 1 maintainer
pvacseq 4.0.10
Personalized Variant Antigens by Cancer Sequencing (pVAC-Seq)20 versions - Latest release: over 7 years ago - 2 dependent repositories - 386 downloads last month - 60 stars on GitHub - 2 maintainers
bioutil 0.4.0
Bioinfomatics File access tools5 versions - Latest release: over 6 years ago - 141 downloads last month - 1 stars on GitHub - 1 maintainer
sruns-monitor 1.2.0
Looks for new Illumina sequencing runs and tars them up into GCP storage19 versions - Latest release: almost 5 years ago - 1 dependent repositories - 517 downloads last month - 1 maintainer
galaxy-model-tools 19.9.0.dev2
Galaxy Model Tools`1 version - Latest release: over 3 years ago - 1 dependent repositories - 45 downloads last month - 1,481 stars on GitHub - 3 maintainers
Top 5.1% on pypi.org
28 versions - Latest release: about 1 month ago - 4 dependent packages - 10 dependent repositories - 1.3 thousand downloads last month - 1,481 stars on GitHub - 3 maintainers
galaxy-web-framework 24.2.3
Galaxy web framework28 versions - Latest release: about 1 month ago - 4 dependent packages - 10 dependent repositories - 1.3 thousand downloads last month - 1,481 stars on GitHub - 3 maintainers
galaxy-selenium 24.2.3
Galaxy Selenium interaction framework28 versions - Latest release: about 1 month ago - 1 dependent repositories - 1.01 thousand downloads last month - 1,481 stars on GitHub - 3 maintainers
Top 3.1% on pypi.org
6 versions - Latest release: over 2 years ago - 4 dependent packages - 13 dependent repositories - 1.08 thousand downloads last month - 1,481 stars on GitHub - 3 maintainers
galaxy-containers 22.1.1
Galaxy Container Modeling and Interaction Abstractions6 versions - Latest release: over 2 years ago - 4 dependent packages - 13 dependent repositories - 1.08 thousand downloads last month - 1,481 stars on GitHub - 3 maintainers
galaxy-test-tools 19.9.0.dev2
Galaxy Test Tools`1 version - Latest release: over 3 years ago - 1 dependent repositories - 56 downloads last month - 1,481 stars on GitHub - 3 maintainers
galaxy-tool-shed 24.2.3
Galaxy auth framework and implementations13 versions - Latest release: about 1 month ago - 623 downloads last month - 1,481 stars on GitHub - 1 maintainer
Top 4.1% on pypi.org
29 versions - Latest release: about 1 month ago - 5 dependent packages - 10 dependent repositories - 1.32 thousand downloads last month - 1,481 stars on GitHub - 3 maintainers
galaxy-job-execution 24.2.3
Galaxy job execution runtime utilities29 versions - Latest release: about 1 month ago - 5 dependent packages - 10 dependent repositories - 1.32 thousand downloads last month - 1,481 stars on GitHub - 3 maintainers
Top 3.6% on pypi.org
34 versions - Latest release: about 1 month ago - 5 dependent packages - 13 dependent repositories - 1.92 thousand downloads last month - 1,481 stars on GitHub - 3 maintainers
galaxy-objectstore 24.2.3
Galaxy objectstore framework and plugins34 versions - Latest release: about 1 month ago - 5 dependent packages - 13 dependent repositories - 1.92 thousand downloads last month - 1,481 stars on GitHub - 3 maintainers
Top 5.2% on pypi.org
28 versions - Latest release: about 1 month ago - 2 dependent packages - 10 dependent repositories - 1.4 thousand downloads last month - 1,481 stars on GitHub - 3 maintainers
galaxy-auth 24.2.3
Galaxy auth framework and implementations28 versions - Latest release: about 1 month ago - 2 dependent packages - 10 dependent repositories - 1.4 thousand downloads last month - 1,481 stars on GitHub - 3 maintainers
Top 4.9% on pypi.org
33 versions - Latest release: about 1 month ago - 9 dependent packages - 13 dependent repositories - 2.04 thousand downloads last month - 1,481 stars on GitHub - 4 maintainers
galaxy-data 24.2.3
Galaxy datatype framework and datatypes33 versions - Latest release: about 1 month ago - 9 dependent packages - 13 dependent repositories - 2.04 thousand downloads last month - 1,481 stars on GitHub - 4 maintainers
Top 3.8% on pypi.org
31 versions - Latest release: about 1 month ago - 3 dependent packages - 10 dependent repositories - 1.62 thousand downloads last month - 1,481 stars on GitHub - 3 maintainers
galaxy-job-metrics 24.2.3
Galaxy job metrics31 versions - Latest release: about 1 month ago - 3 dependent packages - 10 dependent repositories - 1.62 thousand downloads last month - 1,481 stars on GitHub - 3 maintainers
Top 5.4% on pypi.org
25 versions - Latest release: about 1 month ago - 4 dependent packages - 6 dependent repositories - 1.53 thousand downloads last month - 1,481 stars on GitHub - 3 maintainers
galaxy-files 24.2.3
Galaxy file source framework and default plugins25 versions - Latest release: about 1 month ago - 4 dependent packages - 6 dependent repositories - 1.53 thousand downloads last month - 1,481 stars on GitHub - 3 maintainers
galaxy-authnz 19.9.0.dev0
Galaxy AuthNZ1 version - Latest release: over 3 years ago - 1 dependent repositories - 64 downloads last month - 1,481 stars on GitHub - 3 maintainers
galaxy-web-apps 24.2.3
Galaxy web apps24 versions - Latest release: about 1 month ago - 2 dependent packages - 1 dependent repositories - 980 downloads last month - 1,481 stars on GitHub - 3 maintainers
galaxy-test-driver 24.2.3
Galaxy test driver27 versions - Latest release: about 1 month ago - 1 dependent package - 1 dependent repositories - 1.06 thousand downloads last month - 1,481 stars on GitHub - 3 maintainers
galaxy-tours 24.2.3
Galaxy tours backend framework24 versions - Latest release: about 1 month ago - 1 dependent package - 1.14 thousand downloads last month - 1,481 stars on GitHub - 1 maintainer
Top 6.1% on pypi.org
25 versions - Latest release: about 1 month ago - 3 dependent packages - 3 dependent repositories - 1.32 thousand downloads last month - 1,481 stars on GitHub - 3 maintainers
galaxy-config 24.2.3
Galaxy configuration25 versions - Latest release: about 1 month ago - 3 dependent packages - 3 dependent repositories - 1.32 thousand downloads last month - 1,481 stars on GitHub - 3 maintainers
galaxy-schema 24.2.3
Galaxy auth framework and implementations13 versions - Latest release: about 1 month ago - 790 downloads last month - 1,481 stars on GitHub - 1 maintainer
galaxy-test-api 24.2.3
Galaxy API tests27 versions - Latest release: about 1 month ago - 1 dependent repositories - 1.06 thousand downloads last month - 1,481 stars on GitHub - 3 maintainers
Top 5.1% on pypi.org
27 versions - Latest release: about 1 month ago - 5 dependent packages - 10 dependent repositories - 1.3 thousand downloads last month - 1,481 stars on GitHub - 3 maintainers
galaxy-web-stack 24.2.3
Galaxy web stack abstraction27 versions - Latest release: about 1 month ago - 5 dependent packages - 10 dependent repositories - 1.3 thousand downloads last month - 1,481 stars on GitHub - 3 maintainers
Top 6.1% on pypi.org
27 versions - Latest release: about 1 month ago - 2 dependent packages - 9 dependent repositories - 1.07 thousand downloads last month - 1,481 stars on GitHub - 3 maintainers
galaxy-test-base 24.2.3
Galaxy testing utilities27 versions - Latest release: about 1 month ago - 2 dependent packages - 9 dependent repositories - 1.07 thousand downloads last month - 1,481 stars on GitHub - 3 maintainers
galaxy-test-selenium 22.1.1
Galaxy Selenium Tests3 versions - Latest release: over 2 years ago - 1 dependent repositories - 137 downloads last month - 1,389 stars on GitHub - 3 maintainers
galaxy-navigation 24.2.3
Galaxy client DOM navigation framework24 versions - Latest release: about 1 month ago - 2 dependent packages - 1.23 thousand downloads last month - 1,389 stars on GitHub - 1 maintainer
Top 4.4% on pypi.org
28 versions - Latest release: about 1 month ago - 4 dependent packages - 13 dependent repositories - 1.46 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
galaxy-app 24.2.3
Galaxy application (backend)28 versions - Latest release: about 1 month ago - 4 dependent packages - 13 dependent repositories - 1.46 thousand downloads last month - 1,315 stars on GitHub - 3 maintainers
ngstk 0.0.1rc2
Next-generation sequencing utility functions3 versions - Latest release: almost 6 years ago - 1 dependent repositories - 62 downloads last month - 1 stars on GitHub - 4 maintainers
seroba 1.0.0
SEROBA: Serotyping for illumina reads3 versions - Latest release: over 7 years ago - 1 dependent repositories - 68 downloads last month - 16 stars on GitHub - 1 maintainer
vbind 1.0.2
sRNA profiler2 versions - Latest release: almost 4 years ago - 1 dependent repositories - 55 downloads last month - 0 stars on GitHub - 1 maintainer
mutwo.core 2.0.0
core library for event based framework mutwo19 versions - Latest release: about 1 year ago - 9 dependent packages - 11 dependent repositories - 446 downloads last month - 10 stars on GitHub - 1 maintainer
looper 2.0.1
A pipeline submission engine that parses sample inputs and submits pipelines for each sample.28 versions - Latest release: about 1 month ago - 5 dependent repositories - 1.11 thousand downloads last month - 19 stars on GitHub - 4 maintainers
geniml 0.7.0
Genomic interval toolkit12 versions - Latest release: 2 days ago - 3 dependent packages - 452 downloads last month - 18 stars on GitHub - 2 maintainers
travail 0.0.1.dev0
Pipeline for processing samples in context of rare mendelian diseases1 version - Latest release: over 5 years ago - 1 dependent repositories - 95 downloads last month - 1 maintainer
mucor 1.51
Genomic Variant Aggregation and Mutation Correlation2 versions - Latest release: about 9 years ago - 2 dependent repositories - 63 downloads last month - 12 stars on GitHub - 1 maintainer
varvamp 1.2.2
Variable VirusAMPlicons (varVAMP) is a tool to design primers for highly diverse viruses24 versions - Latest release: 2 months ago - 843 downloads last month - 36 stars on GitHub - 1 maintainer
multiqc-msk 1.11.dev0
Create aggregate bioinformatics analysis reports across many samples and tools1 version - Latest release: almost 4 years ago - 1 dependent repositories - 70 downloads last month - 1,286 stars on GitHub - 1 maintainer
isobar 0.2.0
A Python library to express and manipulate musical patterns7 versions - Latest release: 5 months ago - 3 dependent repositories - 203 downloads last month - 372 stars on GitHub - 1 maintainer
relecov-tools 1.4.0
Tools for managing and proccessing relecov network data.9 versions - Latest release: 3 months ago - 2 dependent repositories - 291 downloads last month - 6 stars on GitHub - 3 maintainers
bedhost 0.2.0
A database server application that provides both a RESTful API and GUI for access to BED files an...4 versions - Latest release: over 1 year ago - 198 downloads last month - 37,327 stars on GitHub - 2 maintainers
smallrnaseq 0.6.0 💰
Package for short RNA-seq analysis6 versions - Latest release: over 4 years ago - 1 dependent repositories - 148 downloads last month - 29 stars on GitHub - 1 maintainer
kman 0.0.1
K-mer management tools1 version - Latest release: about 7 years ago - 1 dependent repositories - 32 downloads last month - 0 stars on GitHub - 1 maintainer
seqm 0.1.0
Utilities for calculating sequence metrics.4 versions - Latest release: about 4 years ago - 1 dependent repositories - 147 downloads last month - 0 stars on GitHub - 1 maintainer
gaet 0.3.0
Evaluate the quality of a genome assembly based on annotated genes1 version - Latest release: about 8 years ago - 1 dependent repositories - 30 downloads last month - 1 stars on gitlab.com - 2 maintainers
seqpipe 0.0.7
Sequencing pipeline5 versions - Latest release: over 7 years ago - 1 dependent repositories - 79 downloads last month - 1 stars on GitHub - 1 maintainer
Top 3.1% on pypi.org
8 versions - Latest release: 11 months ago - 7 dependent packages - 11 dependent repositories - 2.11 thousand downloads last month - 37 stars on GitHub - 3 maintainers
airr 1.5.1
AIRR Community Data Representation Standard reference library for antibody and TCR sequencing data.8 versions - Latest release: 11 months ago - 7 dependent packages - 11 dependent repositories - 2.11 thousand downloads last month - 37 stars on GitHub - 3 maintainers
checkqc 4.0.5
A simple program to parse Illumina NGS data and check it for quality criteria.39 versions - Latest release: 7 months ago - 1 dependent repositories - 3.59 thousand downloads last month - 24 stars on GitHub - 3 maintainers
plastid 0.6.1
Tools for analysis of genomics & sequencing data12 versions - Latest release: almost 3 years ago - 4 dependent repositories - 303 downloads last month - 38 stars on GitHub - 1 maintainer
counhto 1.1.0
Python package for generating and demultiplexing hash tag oligo count matrices from cellranger ou...2 versions - Latest release: about 2 years ago - 87 downloads last month - 0 stars on GitHub - 1 maintainer
genetables 0.1.1
Genome table processing4 versions - Latest release: over 8 years ago - 2 dependent repositories - 88 downloads last month - 1 maintainer
pipestat 0.12.1
A pipeline results reporter46 versions - Latest release: 2 months ago - 4 dependent packages - 3 dependent repositories - 45.1 thousand downloads last month - 4 stars on GitHub - 3 maintainers
geo-upload-tool 1.0.8
CLI tool for preparing data submission to Gene Expression Omnibus9 versions - Latest release: almost 4 years ago - 1 dependent repositories - 396 downloads last month - 1 maintainer
omicidx-builder 0.5.1
Tooling to build and deploy omicidx data and resources9 versions - Latest release: almost 5 years ago - 1 dependent repositories - 360 downloads last month - 3 stars on GitHub - 1 maintainer
nanoraw 0.4.2
Analysis of nanopore sequencing data.8 versions - Latest release: over 1 year ago - 1 dependent repositories - 185 downloads last month - 46 stars on GitHub - 1 maintainer
gisaid-download 0.3.0
Assisted download of selected gisaid metadata or EPI_SET creation2 versions - Latest release: about 2 years ago - 114 downloads last month - 1 stars on GitHub - 1 maintainer
ulutil 0.1.1
Python utilities for Church lab work (mostly DNA sequencing)2 versions - Latest release: over 10 years ago - 2 dependent repositories - 77 downloads last month - 1 stars on GitHub - 1 maintainer
tinyscibio 0.4.3
tinyscibio provides convenient shortcut functions to boost daily bioinformatics work.6 versions - Latest release: about 1 month ago - 612 downloads last month - 0 stars on GitHub - 1 maintainer
Top 4.6% on pypi.org
48 versions - Latest release: about 1 month ago - 10 dependent packages - 21 dependent repositories - 49 thousand downloads last month - 40 stars on GitHub - 4 maintainers
biocommons.seqrepo 0.6.11
Non-redundant, compressed, journalled, file-based storage for biological sequences48 versions - Latest release: about 1 month ago - 10 dependent packages - 21 dependent repositories - 49 thousand downloads last month - 40 stars on GitHub - 4 maintainers
seqrepo 0.0.0
alias for the biocommons.seqrepo package1 version - Latest release: over 6 years ago - 1 dependent repositories - 556 downloads last month - 40 stars on GitHub - 1 maintainer
ngsphy 1.0.13
phylogenomic simulation of NGS data13 versions - Latest release: about 7 years ago - 1 dependent repositories - 333 downloads last month - 14 stars on GitHub - 1 maintainer
ngs-toolkit 0.25.1
A toolkit for NGS analysis with Python.31 versions - Latest release: over 4 years ago - 1 dependent repositories - 558 downloads last month - 14 stars on GitHub - 1 maintainer
Top 7.8% on pypi.org
30 versions - Latest release: about 1 year ago - 10 dependent packages - 47 dependent repositories - 63.6 thousand downloads last month - 7 stars on GitHub - 4 maintainers
yacman 0.9.3
A standardized configuration object for reference genome assemblies30 versions - Latest release: about 1 year ago - 10 dependent packages - 47 dependent repositories - 63.6 thousand downloads last month - 7 stars on GitHub - 4 maintainers
pararead 0.8.0
Parallel processing of sequencing reads5 versions - Latest release: 7 months ago - 1 dependent package - 3 dependent repositories - 134 downloads last month - 9 stars on GitHub - 4 maintainers
bedboss 0.6.0
Pipelines for genomic region file to produce bed files, and it's statistics10 versions - Latest release: 3 months ago - 328 downloads last month - 1 stars on GitHub - 2 maintainers
Top 3.0% on pypi.org
73 versions - Latest release: over 2 years ago - 7 dependent packages - 34 dependent repositories - 45.4 thousand downloads last month - 254 stars on GitHub - 4 maintainers
hgvs 1.5.4
HGVS Parser, Formatter, Mapper, Validator73 versions - Latest release: over 2 years ago - 7 dependent packages - 34 dependent repositories - 45.4 thousand downloads last month - 254 stars on GitHub - 4 maintainers
hydra-genetics 3.1.1
Helper tools for use with hydra-genetics pipelines.64 versions - Latest release: 5 months ago - 23 dependent repositories - 2.83 thousand downloads last month - 3 stars on GitHub - 1 maintainer
cosmos-wfm 2.13.11
Workflow Management System229 versions - Latest release: over 4 years ago - 4 dependent repositories - 3.21 thousand downloads last month - 71 stars on GitHub - 1 maintainer
q2-itsxpress 1.8.1
A QIIME2 plugin to trim ITS regions using ITSxpress17 versions - Latest release: almost 2 years ago - 1 dependent repositories - 449 downloads last month - 7 stars on GitHub - 2 maintainers
fdstools 2.1.1
Forensic DNA Sequencing Tools15 versions - Latest release: 10 months ago - 2 dependent repositories - 1.31 thousand downloads last month - 5 stars on GitHub - 1 maintainer
rrequested-demultiplex 1.2.0
rrequested-demultiplex: A versatile package to preprocess raw basecalled reads with quality and s...1 version - Latest release: over 1 year ago - 51 downloads last month - 1 stars on GitHub - 1 maintainer
rnacounter 1.5.2
Estimate abundances of genomic features from read densities14 versions - Latest release: about 10 years ago - 2 dependent repositories - 238 downloads last month - 1 stars on GitHub - 2 maintainers
Top 4.3% on pypi.org
55 versions - Latest release: 3 months ago - 1 dependent package - 4 dependent repositories - 19.9 thousand downloads last month - 255 stars on GitHub - 4 maintainers
nf-core 3.2.0
Helper tools for use with nf-core Nextflow pipelines.55 versions - Latest release: 3 months ago - 1 dependent package - 4 dependent repositories - 19.9 thousand downloads last month - 255 stars on GitHub - 4 maintainers
seq-dove 0.4.4
Set of tools for downstream vcf analysis24 versions - Latest release: over 4 years ago - 1 dependent repositories - 310 downloads last month - 1 maintainer
Top 7.1% on pypi.org
53 versions - Latest release: over 4 years ago - 7 dependent repositories - 1.29 thousand downloads last month - 173 stars on GitHub - 2 maintainers
ariba 2.14.6
ARIBA: Antibiotic Resistance Identification By Assembly53 versions - Latest release: over 4 years ago - 7 dependent repositories - 1.29 thousand downloads last month - 173 stars on GitHub - 2 maintainers
nanorepeat 1.8.1
NanoRepeat: quantification of Short Tandem Repeats (STRs) from long-read sequencing data7 versions - Latest release: 9 months ago - 240 downloads last month - 18 stars on GitHub - 1 maintainer
primavera 0.1.14
Primer selection + data analysis for DNA assembly validation.13 versions - Latest release: 9 days ago - 1 dependent repositories - 289 downloads last month - 33 stars on GitHub - 1 maintainer
deepsvr 0.0.1.post1
Automated Somatic Variant Refinement by Deep Learning1 version - Latest release: about 7 years ago - 1 dependent repositories - 45 downloads last month - 50 stars on GitHub - 1 maintainer
deepaclive 0.3.2
Detecting novel pathogens from NGS reads in real-time during a sequencing run.5 versions - Latest release: about 4 years ago - 1 dependent repositories - 192 downloads last month - 1 stars on gitlab.com - 1 maintainer
spritefridge 1.4.0
A python toolbox for processing SPRITE-seq within the cooler universe18 versions - Latest release: 3 months ago - 644 downloads last month - 0 stars on GitHub - 1 maintainer
Top 8.1% on pypi.org
21 versions - Latest release: 7 months ago - 3 dependent packages - 6 dependent repositories - 66.4 thousand downloads last month - 5 stars on GitHub - 3 maintainers
eido 0.2.4
A project metadata validator21 versions - Latest release: 7 months ago - 3 dependent packages - 6 dependent repositories - 66.4 thousand downloads last month - 5 stars on GitHub - 3 maintainers
snpmatch 4.0.0
A simple python library to identify the most likely strain given the SNPs for a sample14 versions - Latest release: about 5 years ago - 1 dependent repositories - 394 downloads last month - 9 stars on GitHub - 1 maintainer
Top 3.6% on pypi.org
22 versions - Latest release: about 1 month ago - 1 dependent package - 9 dependent repositories - 4.46 thousand downloads last month - 0 stars on GitHub - 5 maintainers
presto 0.7.4
A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.22 versions - Latest release: about 1 month ago - 1 dependent package - 9 dependent repositories - 4.46 thousand downloads last month - 0 stars on GitHub - 5 maintainers
chiron 0.6.1
A deep neural network basecaller for nanopore sequencing.14 versions - Latest release: over 5 years ago - 353 downloads last month - 122 stars on GitHub - 1 maintainer
buisciii-tools 2.2.7
Tools for managing and resolution of buisciii services.5 versions - Latest release: 15 days ago - 221 downloads last month - 2 stars on GitHub - 2 maintainers
markmeld 0.3.0
Markmeld is a markup melder that combines structured yaml or markdown data into templated markdow...4 versions - Latest release: over 1 year ago - 1 dependent repositories - 174 downloads last month - 2 maintainers
bookend-rna 1.2.1
End-guided transcript assembler for short and long RNA-seq reads.17 versions - Latest release: over 1 year ago - 1 dependent repositories - 390 downloads last month - 16 stars on GitHub - 1 maintainer
multiqc-sgr 1.21.4
Create aggregate bioinformatics analysis reports across many samples and tools8 versions - Latest release: 11 months ago - 367 downloads last month - 0 stars on GitHub - 1 maintainer
vizitig 1.0.3
A python manipulation and visualization of genomic graph data4 versions - Latest release: 3 months ago - 185 downloads last month - 82 stars on GitHub - 2 maintainers
k-seq 0.4.2a0
Kinetic sequencing analysis by Chen lab at University of California, Santa Barbara3 versions - Latest release: about 5 years ago - 1 dependent repositories - 74 downloads last month - 0 stars on GitHub - 1 maintainer
aldy 4.3.1
A tool for allelic decomposition (haplotype reconstruction) and exact genotyping of highly polymo...20 versions - Latest release: over 2 years ago - 1 dependent repositories - 790 downloads last month - 55 stars on GitHub - 1 maintainer
snoopy 0.4.7
Browser based quality control tool to expedite reviewing predicted variants in next generation se...7 versions - Latest release: over 8 years ago - 3 dependent repositories - 143 downloads last month - 9 stars on GitHub - 1 maintainer
Top 3.5% on pypi.org
25 versions - Latest release: over 3 years ago - 1 dependent package - 10 dependent repositories - 37.6 thousand downloads last month - 75 stars on GitHub - 4 maintainers
refgenie 0.12.1
Refgenie creates a standardized folder structure for reference genome files and indexes. You can ...25 versions - Latest release: over 3 years ago - 1 dependent package - 10 dependent repositories - 37.6 thousand downloads last month - 75 stars on GitHub - 4 maintainers
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