Ecosyste.ms: Packages

An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.

pypi.org "napari-plugin" keyword

napari-pyclesperanto-assistant 0.22.1
GPU-accelerated image processing in napari using OpenCL
68 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 768 downloads last month - 31 stars on GitHub - 1 maintainer
ilastik-napari 0.2.4
ilastik plugin for napari
4 versions - Latest release: about 1 month ago - 84 downloads last month - 12 stars on GitHub - 2 maintainers
napari-labelimg4classification 0.1.1
Image-Level labeling tool
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 34 downloads last month - 4 stars on GitHub - 1 maintainer
Top 7.8% on pypi.org
napari-ome-zarr 0.5.2
A reader for zarr backed OME-NGFF images.
12 versions - Latest release: almost 2 years ago - 5 dependent packages - 5 dependent repositories - 1.28 thousand downloads last month - 23 stars on GitHub - 1 maintainer
napari-plot-profile 0.2.2
Plot intensity along a line and create topographical views in napari
10 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 324 downloads last month - 17 stars on GitHub - 1 maintainer
Top 9.4% on pypi.org
napari-matplotlib 2.0.1 💰
A plugin to use Matplotlib with napari
12 versions - Latest release: 4 months ago - 9 dependent packages - 1 dependent repositories - 2.22 thousand downloads last month - 39 stars on GitHub - 1 maintainer
napari-itk-io 0.3.0
File IO with itk for napari
4 versions - Latest release: about 1 year ago - 3 dependent packages - 2 dependent repositories - 138 downloads last month - 7 stars on GitHub - 1 maintainer
itk_napari_conversion 0.3.1
Convert between itk and napari data structures.
4 versions - Latest release: about 3 years ago - 3 dependent repositories - 159 downloads last month - 3 stars on GitHub - 2 maintainers
napari-orientationpy 0.0.7
Napari plugin for the Orientationpy project.
7 versions - Latest release: 4 months ago - 72 downloads last month - 0 stars on GitHub - 1 maintainer
napari-rembg 0.0.7
AI-based foreground extraction in scientific and natural images.
7 versions - Latest release: 3 months ago - 75 downloads last month - 1 stars on GitHub - 1 maintainer
napari-bleach-correct 0.0.1
A napari plugin to correct time-lapse images for photobleaching.
1 version - Latest release: over 1 year ago - 25 downloads last month - 2 stars on GitHub - 1 maintainer
napari-hippo 0.2.0
A fat and clumsy collection of hyperspectral tools
2 versions - Latest release: 4 days ago - 9 downloads last month - 2 stars on GitHub - 1 maintainer
napari_video 0.2.9
napari plugin for reading videos.
12 versions - Latest release: over 1 year ago - 1 dependent repositories - 192 downloads last month - 11 stars on GitHub - 1 maintainer
empanada-napari 1.1.0
Napari plugin of algorithms for Panoptic Segmentation of organelles in EM
10 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 219 downloads last month - 15 stars on GitHub - 2 maintainers
cellfinder-napari 1.0.2
Efficient cell detection in large images
39 versions - Latest release: 5 months ago - 3 dependent packages - 1 dependent repositories - 285 downloads last month - 24 stars on GitHub - 1 maintainer
brainglobe-napari-io 0.3.4
Read and write files from the BrainGlobe computational neuroanatomy suite into napari
19 versions - Latest release: 3 months ago - 8 dependent packages - 1 dependent repositories - 762 downloads last month - 10 stars on GitHub - 2 maintainers
Top 7.0% on pypi.org
bfio 2.3.6
Simple reading and writing classes for tiled tiffs using Bio-Formats.
46 versions - Latest release: 3 months ago - 8 dependent packages - 10 dependent repositories - 7.23 thousand downloads last month - 10 stars on GitHub - 2 maintainers
napari-live-histogram 0.0.2
Dynamically change the layer opacity in Napari.
2 versions - Latest release: 6 months ago - 30 downloads last month - 0 stars on GitHub - 1 maintainer
napari-segment-blobs-and-things-with-membranes 0.3.8
A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy im...
35 versions - Latest release: about 2 months ago - 5 dependent packages - 1 dependent repositories - 1.4 thousand downloads last month - 20 stars on GitHub - 1 maintainer
napari-script-editor 0.2.10
A python script editor for napari
14 versions - Latest release: 11 months ago - 2 dependent repositories - 133 downloads last month - 10 stars on GitHub - 1 maintainer
napari-process-points-and-surfaces 0.5.0
Process and analyze surfaces using open3d and vedo in napari
16 versions - Latest release: about 1 year ago - 4 dependent packages - 1 dependent repositories - 480 downloads last month - 21 stars on GitHub - 1 maintainer
napari-cupy-image-processing 0.4.1
GPU-accelerated image processing using CUDA
17 versions - Latest release: 9 months ago - 1 dependent repositories - 158 downloads last month - 19 stars on GitHub - 1 maintainer
napari-accelerated-pixel-and-object-classification 0.14.1
Pixel and label classification using OpenCL-based Random Forest Classifiers
35 versions - Latest release: 7 months ago - 1 dependent package - 1 dependent repositories - 536 downloads last month - 41 stars on GitHub - 1 maintainer
devbio-napari 0.10.1
A bundle of napari plugins useful for 3D+t image processing and analysis for studying development...
28 versions - Latest release: 11 months ago - 1 dependent repositories - 428 downloads last month - 39 stars on GitHub - 1 maintainer
napari-crop 0.1.9
Crop regions in napari manually
10 versions - Latest release: 11 months ago - 1 dependent package - 1 dependent repositories - 322 downloads last month - 7 stars on GitHub - 2 maintainers
napari-label-focus 0.0.7
Easily focus the view on selected elements form a Labels layer.
7 versions - Latest release: 6 months ago - 1 dependent package - 47 downloads last month - 0 stars on GitHub - 1 maintainer
napari-findaureus 0.0.4
Locate bacteria in CLSM obtained infected bone tissue images
4 versions - Latest release: 29 days ago - 390 downloads last month - 0 stars on GitHub - 1 maintainer
napari-time-slicer 0.5.0
A meta plugin for processing timelapse data in napari timepoint by timepoint
22 versions - Latest release: 6 months ago - 12 dependent packages - 8 dependent repositories - 1.6 thousand downloads last month - 3 stars on GitHub - 1 maintainer
hipocount-napari 2024.2.5
Quantitative analysis of immunofluorescence images of hippocampal slices
4 versions - Latest release: 3 months ago - 21 downloads last month - 1 stars on GitHub - 1 maintainer
napari-floodfill 0.0.1
Livewire-based annotation of objects.
1 version - Latest release: 6 months ago - 15 downloads last month - 0 stars on GitHub - 1 maintainer
napari-locan 0.5.0
Use locan methods in napari for single-molecule localization microscopy data.
5 versions - Latest release: 5 months ago - 37 downloads last month - 1 stars on GitHub - 1 maintainer
napari-woggle-opacity 0.0.1
Dynamically change the layer opacity in Napari.
1 version - Latest release: 7 months ago - 13 downloads last month - 0 stars on GitHub - 1 maintainer
napari-z-plotter 0.0.6
Interactively plot the image intensity profile along the depth axis of a 3D image dataset.
6 versions - Latest release: 6 months ago - 45 downloads last month - 1 stars on GitHub - 1 maintainer
napari-caphid 0.0.1
Annotation of aphid and update table
1 version - Latest release: 10 months ago - 13 downloads last month - 0 stars on GitHub - 1 maintainer
napari-tiledb-bioimg 0.0.1
Support reading and writing TileDB-Bioimaging image arrays within Napari
1 version - Latest release: about 1 year ago - 21 downloads last month - 7 stars on GitHub - 3 maintainers
napari-seedseg 0.0.2
A simple plugin for segmentation
2 versions - Latest release: about 1 year ago - 7 downloads last month - 0 stars on GitHub - 1 maintainer
napari-blender-bridge 0.2.0
Transfer surface layers between Napari and Blender
4 versions - Latest release: about 1 year ago - 35 downloads last month - 8 stars on GitHub - 1 maintainer
napari-macrokit 0.0.1
Executable script generation for napari plugins
1 version - Latest release: over 1 year ago - 1 dependent package - 35 downloads last month - 3 stars on GitHub - 1 maintainer
napari-pixel-correction 0.1.4
Plugin to correct manually pixel wrongly predicted on image by annotation
2 versions - Latest release: over 1 year ago - 17 downloads last month - 2 stars on GitHub - 1 maintainer
em-deepfinder 1.1.0
Deep Finder is an original deep learning approach to localize macromolecules in cryo electron tom...
1 version - Latest release: almost 2 years ago - 63 downloads last month - 4 stars on GitHub - 1 maintainer
napari-trait2d 0.1.4
A napari plugin for TRAIT2D, a software for quantitative analysis of single particle diffusion data
5 versions - Latest release: almost 2 years ago - 34 downloads last month - 0 stars on GitHub - 1 maintainer
napari-vesicles-segmentation 0.0.1
A simple plugin to detect vesicles in cells images.
1 version - Latest release: almost 2 years ago - 10 downloads last month - 4 stars on GitHub - 1 maintainer
napari-spatialdata 0.4.1
Interactive visualization of spatial omics data with napari
14 versions - Latest release: about 2 months ago - 1 dependent package - 662 downloads last month - 31 stars on GitHub - 1 maintainer
napari-mm3 0.0.16
a plugin for mother machine image analysis
12 versions - Latest release: 13 days ago - 1 dependent repositories - 95 downloads last month - 6 stars on GitHub - 2 maintainers
napari-kics 0.0.3rc6
A plugin to estimate chromosome sizes from karyotype images.
4 versions - Latest release: almost 2 years ago - 1 dependent repositories - 36 downloads last month - 4 stars on GitHub - 1 maintainer
world2data 0.0.3
A napari plugin in order to convert the world information to the data of a 2D/3D layer
1 version - Latest release: over 2 years ago - 1 dependent repositories - 17 downloads last month - 0 stars on GitHub - 1 maintainer
partial-aligner 0.0.1
A napari plugin for manual registration of (a part of) an image
1 version - Latest release: over 2 years ago - 1 dependent repositories - 26 downloads last month - 1 stars on GitHub - 1 maintainer
offset-subtraction 0.0.5
A napari plugin in oder to subtract an intensity offset such as autofluorescence
1 version - Latest release: over 2 years ago - 1 dependent repositories - 15 downloads last month - 0 stars on GitHub - 1 maintainer
napari-yolov5 0.2.14
Plugin adapted from Ultralytics to bring YOLOv5 into Napari
5 versions - Latest release: over 1 year ago - 1 dependent repositories - 41 downloads last month - 7 stars on GitHub - 1 maintainer
napari-workflow-optimizer 0.1.4
Optimize image processing workflows in napari for segmentation quality
5 versions - Latest release: about 2 years ago - 1 dependent package - 1 dependent repositories - 107 downloads last month - 17 stars on GitHub - 1 maintainer
napari-webcam 0.1.19
Use your webcam from napari
15 versions - Latest release: over 2 years ago - 1 dependent repositories - 106 downloads last month - 1 stars on GitHub - 1 maintainer
napari-workflow-inspector 0.2.2
Inspect relationships between image processing operations in active workflows in napari
7 versions - Latest release: about 2 years ago - 2 dependent packages - 1 dependent repositories - 188 downloads last month - 8 stars on GitHub - 1 maintainer
napari-tracks-reader 0.1.3
Read tracks from txt (xml, csv) files to napari
3 versions - Latest release: almost 3 years ago - 1 dependent repositories - 43 downloads last month - 7 stars on GitHub - 1 maintainer
napari-text-layer 0.1.2
Text layer for bio-image annotation.
3 versions - Latest release: over 2 years ago - 1 dependent repositories - 22 downloads last month - 6 stars on GitHub - 1 maintainer
napari-stracking 0.1.9
Linking and tracks analysis
7 versions - Latest release: about 2 years ago - 1 dependent repositories - 64 downloads last month - 6 stars on GitHub - 1 maintainer
napari-tabu 0.1.5
A plugin for handling multiple napari windows
6 versions - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 191 downloads last month - 0 stars on GitHub - 1 maintainer
napari-sentinel-zip 0.2.2
Stacks and opens Sentinel mission zip archives for one tile across different timepoints.
6 versions - Latest release: over 3 years ago - 1 dependent repositories - 41 downloads last month - 2 stars on GitHub - 1 maintainer
napari-plugin-search 0.1.4
Find napari plugins
5 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 180 downloads last month - 0 stars on GitHub - 1 maintainer
napari-omero 0.2.1
napari/OMERO interoperability
7 versions - Latest release: about 1 year ago - 1 dependent repositories - 88 downloads last month - 32 stars on GitHub - 1 maintainer
napari-oclrfc 0.4.6
Pixel and label classification using OpenCL-based Random Forest Classifiers
13 versions - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 50 downloads last month - 1 stars on GitHub - 1 maintainer
napari-nd-cropper 0.1.3
A napari plugin in order to crop nd-images via different modes
1 version - Latest release: over 2 years ago - 1 dependent repositories - 24 downloads last month - 0 stars on GitHub - 1 maintainer
napari-multitask 0.0.2
Multitasking in napari
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 19 downloads last month - 2 stars on GitHub - 1 maintainer
napari-mat-images 0.1.3
A plugin to load images stored in MATLAB .mat files with napari
4 versions - Latest release: almost 3 years ago - 1 dependent repositories - 39 downloads last month - 1 stars on GitHub - 1 maintainer
napari-mouse-controls 0.1.3
Control napari using a touch screen
4 versions - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 114 downloads last month - 1 stars on GitHub - 1 maintainer
napari-medical-image-formats 0.3.8
A Plugin in order to read medical image formats such as DICOM and NIfTI
3 versions - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 72 downloads last month - 6 stars on GitHub - 1 maintainer
napari-mahotas-image-processing 0.1.3
Image processing based using the Mahotas library in napari
4 versions - Latest release: over 2 years ago - 1 dependent repositories - 59 downloads last month - 1 stars on GitHub - 1 maintainer
napari-layer-details-display 0.1.5
A display for layer information and properties
6 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 266 downloads last month - 2 stars on GitHub - 1 maintainer
napari-labelling-assistant 0.0.5
A lightweight plugin for visualizing labelling statistics.
5 versions - Latest release: over 2 years ago - 1 dependent repositories - 63 downloads last month - 1 stars on GitHub - 1 maintainer
napari-labels-overlap 0.0.3
create an overlap labels layer from two labels layers
3 versions - Latest release: almost 2 years ago - 1 dependent repositories - 28 downloads last month - 1 stars on GitHub - 1 maintainer
napari-j 0.2.4
A plugin to exchange data with FIJI and to use FIJI image analysis from napari
6 versions - Latest release: over 1 year ago - 1 dependent repositories - 54 downloads last month - 3 stars on GitHub - 2 maintainers
napari-hdf5-labels-io 0.3.dev16
Napari plugin to store set of layers in a .h5 file. Label layer are stored in a sparse representa...
9 versions - Latest release: over 2 years ago - 1 dependent repositories - 60 downloads last month - 1 stars on GitHub - 1 maintainer
napari-elementary-numpy-operations 0.0.5
A napari plugin covers elementary numpy operations like swap axes, flip, sqeeze an array or rotat...
3 versions - Latest release: over 2 years ago - 1 dependent repositories - 63 downloads last month - 1 stars on GitHub - 1 maintainer
napari-folder-browser 0.1.4
Browse folders of images and open them using double-click
5 versions - Latest release: about 2 months ago - 1 dependent package - 1 dependent repositories - 194 downloads last month - 5 stars on GitHub - 1 maintainer
napari-dvid 0.2.0
DVID loader for napari, from a url
2 versions - Latest release: almost 3 years ago - 1 dependent repositories - 11 downloads last month - 0 stars on GitHub - 1 maintainer
napari-deepmeta 2.1
Mice lungs and metastases segmentation tool.
9 versions - Latest release: almost 2 years ago - 1 dependent repositories - 70 downloads last month - 2 stars on GitHub - 1 maintainer
napari-curtain 0.1.1
View one image over another as curtain
2 versions - Latest release: over 2 years ago - 1 dependent package - 1 dependent repositories - 146 downloads last month - 4 stars on GitHub - 1 maintainer
napari-brightness-contrast 0.1.8
Advanced layer visualization options
9 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 170 downloads last month - 11 stars on GitHub - 1 maintainer
napari-brainreg-standard 0.0.3
Visualise brainreg registration output in standard space
1 version - Latest release: over 3 years ago - 1 dependent repositories - 18 downloads last month - 6 stars on GitHub - 1 maintainer
napari-animated-gif-io 0.1.2
Save 3D image stacks as animated gifs
3 versions - Latest release: about 2 years ago - 1 dependent repositories - 57 downloads last month - 4 stars on GitHub - 1 maintainer
napari-3d-ortho-viewer 0.1.5
Napari 3D Ortho Viewer - an ortho viewer for napari for 3D images
3 versions - Latest release: 6 months ago - 1 dependent package - 1 dependent repositories - 80 downloads last month - 6 stars on GitHub - 1 maintainer
label-creator 0.0.9
A napari plugin for generation of Label-Layers according to selected image data shapes
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 43 downloads last month - 0 stars on GitHub - 1 maintainer
image-part-selecter 0.0.7
A napari plugin in order to select parts of images
1 version - Latest release: over 2 years ago - 1 dependent repositories - 24 downloads last month - 0 stars on GitHub - 1 maintainer
grabber-ift 0.2.2
A tool for contour-based segmentation correction (2D only).
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 37 downloads last month - 16 stars on GitHub - 1 maintainer
elastix-napari 0.2.1
A toolbox for rigid and nonrigid registration of images.
11 versions - Latest release: 11 months ago - 1 dependent repositories - 138 downloads last month - 30 stars on GitHub - 2 maintainers
napari-clusters-plotter 0.7.3
A plugin to use with napari for clustering objects according to their properties
19 versions - Latest release: 9 months ago - 4 dependent packages - 1 dependent repositories - 425 downloads last month - 64 stars on GitHub - 3 maintainers
mikro-napari 0.1.63
A napari plugin to interact with and provide functionality for a connected arkitekt server
50 versions - Latest release: 4 months ago - 1 dependent repositories - 316 downloads last month - 0 stars on GitHub - 1 maintainer
Top 6.2% on pypi.org
napari-skimage-regionprops 0.10.1
A regionprops table widget plugin for napari
49 versions - Latest release: almost 1 year ago - 16 dependent packages - 8 dependent repositories - 2.32 thousand downloads last month - 46 stars on GitHub - 1 maintainer
napari-magic-wand 0.0.3
Livewire-based annotation of objects.
3 versions - Latest release: 5 months ago - 28 downloads last month - 1 stars on GitHub - 1 maintainer
layer-data-replace 0.0.5
A napari plugin in order to replace parts of the data of a layer by another one
1 version - Latest release: over 2 years ago - 1 dependent repositories - 21 downloads last month - 0 stars on GitHub - 1 maintainer
image-composer 0.0.19
A napari plugin in order to compose a background image with a foreground image
2 versions - Latest release: over 2 years ago - 1 dependent repositories - 33 downloads last month - 1 stars on GitHub - 1 maintainer
napari-simpleitk-image-processing 0.4.5
Process and analyze images using SimpleITK in napari
21 versions - Latest release: over 1 year ago - 2 dependent packages - 1 dependent repositories - 484 downloads last month - 18 stars on GitHub - 1 maintainer
napari-aphid 1.1.7
A plugin to classify aphids by stage of development.
9 versions - Latest release: 11 months ago - 85 downloads last month - 3 stars on GitHub - 1 maintainer
napari-time-series-plotter 0.0.6
A Plugin for napari to visualize pixel values over the first dimension (time -> t+3D, t+2D) as gr...
6 versions - Latest release: 10 months ago - 1 dependent package - 1 dependent repositories - 45 downloads last month - 10 stars on GitHub - 1 maintainer
napari-sc3d-viewer 1.1.0
A plugin to visualize 3D single cell omics
5 versions - Latest release: 10 months ago - 69 downloads last month - 18 stars on GitHub - 1 maintainer
napari-yapic-prediction 0.2.0
napari widget that performs image segmentation with yapic model in the napari window. Install TEN...
14 versions - Latest release: over 2 years ago - 1 dependent repositories - 120 downloads last month - 0 stars on GitHub - 1 maintainer
natari 0.2.7
Napari gaming
8 versions - Latest release: over 2 years ago - 1 dependent repositories - 63 downloads last month - 16 stars on GitHub - 1 maintainer
napari-deepfinder 0.0.1
A napari plugin for the DeepFinder library which includes display, annotation, target generation,...
1 version - Latest release: almost 2 years ago - 31 downloads last month - 4 stars on GitHub - 1 maintainer
cryoet-deepfinder 1.1.2
DeepFinder is an original deep learning approach to localize macromolecules in cryo electron tomo...
5 versions - Latest release: almost 2 years ago - 31 downloads last month - 4 stars on GitHub - 1 maintainer
napari-lf 0.1.6
Light field imaging plugin for napari
4 versions - Latest release: about 1 year ago - 32 downloads last month - 9 stars on GitHub - 1 maintainer
napari-allencell-segmenter 2.1.12
A plugin that enables 3D image segmentation provided by Allen Institute for Cell Science
26 versions - Latest release: 11 months ago - 1 dependent package - 1 dependent repositories - 242 downloads last month - 17 stars on GitHub - 1 maintainer
Related Keywords
napari 29 python 18 image-processing 7 deep-learning 6 image-segmentation 4 tensorflow 4 microscopy 3 cryo-et 3 deepfinder 3 microscopy-images 3 plotting 3 fluorescence-microscopy-imaging 3 object-detection 3 biophysics 2 neuroscience 2 napari-visualization 2 3d 2 segmentation 2 imagej 2 image-analysis 2 scientific-computing 2 open-source 2 ilastik 2 medical-imaging 2 itk 2 python3 2 biomedical-image-processing 1 otsu-thresholding 1 fiji 1 bioimage-analysis 1 unet-image-segmentation 1 chromosomes 1 python-3 1 labelling 1 size-estimation 1 histology 1 assistive-technology 1 omero 1 plugin 1 OMERO.CLI 1 image-restoration 1 image-registration 1 nuclei-segmentation 1 cell-segmentation 1 napari-allencell-segmenter 1 spatial-transcriptomics 1 timeseries-analysis 1 timeseries 1 time-series-analysis 1 time-series 1 qt 1 image-annotation 1 skimage 1 microscopy-data 1 automation 1 clustering 1 itkelastix 1 elastix 1 livewire 1 image-foresting-transform 1 grabber 1 mri-images 1 lungs-segmentation 1 deeplearning 1 cookiecutter-napari-plugin 1 yapic 1 cellfinder 1 cell-detection 1 panoptic-segmentation 1 mitochondria 1 instance-segmentation 1 electron-microscopy 1 2d 1 video 1 opencv 1 hyperspectral-imaging 1 hyperspectral 1 gui-application 1 segment-anything-model 1 rembg 1 io 1 hacktoberfest 1 matplotlib 1 zarr 1 ngff 1 pyopencl 1 clesperanto 1 visualization 1 spatial-omics 1 spatial-analysis 1 vesicles 1 cell-biology 1 single-particle-tracking 1 project 1 example 1 tiledb 1 bioimaging 1 locan 1 napari plugin 1 infection 1