Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "cryoem" keyword
scipion-em-xmipp 22.7.0
Plugin to use Xmipp programs within the Scipion framework (see https://scipion-em.github.io/docs/).51 versions - Latest release: almost 2 years ago - 3 dependent packages - 2 dependent repositories - 402 downloads last month - 11 stars on GitHub - 1 maintainer
scipion-em-phenix 3.2.1
PHENIX programs in Scipion. Warning: Install PHENIX v. 1-1719 versions - Latest release: over 1 year ago - 1 dependent package - 1 dependent repositories - 101 downloads last month - 3 stars on GitHub - 1 maintainer
scipion-em-repic 3.0.0
Scipion plugin for REPIC.1 version - Latest release: 10 months ago - 16 downloads last month - 0 stars on GitHub - 1 maintainer
xmipp-metadata 1.0.14
Package to handle Xmipp Metadata and image binary data14 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 109 downloads last month - 0 stars on GitHub - 1 maintainer
Top 8.6% on pypi.org
7 versions - Latest release: about 2 years ago - 3 dependent packages - 2 dependent repositories - 220 downloads last month - 162 stars on GitHub - 1 maintainer
topaz-em 0.2.5
Particle picking with positive-unlabeled CNNs7 versions - Latest release: about 2 years ago - 3 dependent packages - 2 dependent repositories - 220 downloads last month - 162 stars on GitHub - 1 maintainer
scipion-em-tomo3d 3.1.2
tomo3d and other software at https://sites.google.com/site/3demimageprocessing/Home ready to use ...3 versions - Latest release: 6 months ago - 1 dependent repositories - 61 downloads last month - 0 stars on GitHub - 1 maintainer
Top 8.1% on pypi.org
43 versions - Latest release: 2 days ago - 38 dependent packages - 70 dependent repositories - 951 downloads last month - 7 stars on GitHub - 2 maintainers
scipion-em 3.7.1
This modules contains classes related with EM43 versions - Latest release: 2 days ago - 38 dependent packages - 70 dependent repositories - 951 downloads last month - 7 stars on GitHub - 2 maintainers
scipion-app 3.3.1
Scipion application. For processing cryo electron microscopy images and hybrid modelling18 versions - Latest release: 2 months ago - 2 dependent packages - 1 dependent repositories - 180 downloads last month - 6 stars on GitHub - 1 maintainer
scipion-em-facilities 3.0.5
Plugin for Cryo-EM facilities to be used within Scipion framework9 versions - Latest release: 9 months ago - 1 dependent repositories - 75 downloads last month - 1 stars on GitHub - 1 maintainer
cesped 24.5.0
Code utilities for the CESPED (Cryo-EM Supervised Pose Estimation Dataset) benchmark6 versions - Latest release: 15 days ago - 227 downloads last month - 1 stars on GitHub - 1 maintainer
scipion-em-smartscope 3.0.1
Plugin to manage Smartscope from Scipion3 versions - Latest release: 7 months ago - 23 downloads last month - 3 stars on GitHub - 1 maintainer
scipion-em-isonet 3.0.1
Scipion plugin isonet.2 versions - Latest release: 3 months ago - 14 downloads last month - 20 stars on GitHub - 1 maintainer
scipion-em-prody 3.3.0
Scipion plugin for ProDy, the Bahar lab Python Package for Protein Dynamics Analysis11 versions - Latest release: 9 months ago - 1 dependent repositories - 96 downloads last month - 3 stars on GitHub - 1 maintainer
topaztrainmetrics 1.2
Plot metrics from a Topaz training run3 versions - Latest release: over 2 years ago - 1 dependent repositories - 33 downloads last month - 0 stars on GitHub - 1 maintainer
superpose3d 1.4.1
Diamond's 1988 rotational superposition algorithm (+scale tranforms)26 versions - Latest release: about 2 years ago - 1 dependent package - 2 dependent repositories - 225 downloads last month - 39 stars on GitHub - 1 maintainer
scipion-installer 1.0.16
Installs scipion 3 creating a virtual environment for it, for now only for developers.43 versions - Latest release: about 1 year ago - 1 dependent repositories - 226 downloads last month - 3 stars on GitHub - 1 maintainer
scipion-em-xmipptomo 3.1.2
Scipion plugin to deal with xmipp tomography protocols.16 versions - Latest release: about 1 year ago - 1 dependent repositories - 178 downloads last month - 4 stars on GitHub - 1 maintainer
scipion-em-xmipp2 3.0.1
xmipp2 ready to use in scipion.2 versions - Latest release: almost 3 years ago - 1 dependent repositories - 29 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-tomosegmemtv 3.1.2
Scipion plugin for softare packages tomosegmemTV and membraneAnnotator.7 versions - Latest release: 4 months ago - 1 dependent repositories - 62 downloads last month - 2 stars on GitHub - 1 maintainer
scipion-em-powerfit 2.0.3
Powerfit ready to use in Scipion.12 versions - Latest release: over 4 years ago - 1 dependent repositories - 24 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-pwperformance 0.0.5
Python module to provide performance analysis tools and storage of the metrics for a further comp...5 versions - Latest release: about 1 year ago - 1 dependent repositories - 15 downloads last month - 1 stars on GitHub - 1 maintainer
scipion-em-ispyb 1.0.0
ISPyB monitor for scipion2 versions - Latest release: about 5 years ago - 1 dependent repositories - 10 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-localrec 3.2.0
Localrec ready to use in scipion.11 versions - Latest release: 6 months ago - 1 dependent repositories - 62 downloads last month - 5 stars on GitHub - 1 maintainer
scipion-em-grigoriefflab 1.0.6
Grigoriefflab ready to use in scipion.9 versions - Latest release: almost 5 years ago - 1 dependent repositories - 26 downloads last month - 0 stars on GitHub - 4 maintainers
scipion-em-emxlib 3.0.1
EMX_EXPORT ready to use in scipion.8 versions - Latest release: over 3 years ago - 1 dependent repositories - 8 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-esrf 1.0.2
Esrf's ISPyB monitor for Scipion4 versions - Latest release: about 5 years ago - 1 dependent repositories - 4 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-deepfinder 3.1.0
Deepfinder plugin for scipion.2 versions - Latest release: 6 months ago - 1 dependent repositories - 27 downloads last month - 4 stars on GitHub - 1 maintainer
scipion-em-chimera 3.3.6
Plugin to use chimera programs within the Scipion framework17 versions - Latest release: 10 months ago - 1 dependent package - 3 dependent repositories - 127 downloads last month - 1 stars on GitHub - 2 maintainers
scipion-em-ccp4 3.2.0
CCP4 model building programs in Scipion. Warning: Install CCP4 v. 7.0.56 or higher25 versions - Latest release: 10 months ago - 1 dependent package - 1 dependent repositories - 48 downloads last month - 2 stars on GitHub - 1 maintainer
scipion-em-bionotes 0.1.2
Scipion 3DBionotes plugin.1 version - Latest release: over 4 years ago - 1 dependent repositories - 8 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-appion 3.0.3
Plugin to use Appion Dogpicker within the Scipion framework8 versions - Latest release: over 3 years ago - 1 dependent repositories - 25 downloads last month - 0 stars on GitHub - 1 maintainer
localres 1.7
Plot the histogram of local resolution values of a cryo-EM reconstruction8 versions - Latest release: over 2 years ago - 1 dependent repositories - 46 downloads last month - 4 stars on GitHub - 1 maintainer
kltpicker 1.2.8
KLT picker11 versions - Latest release: over 3 years ago - 1 dependent repositories - 15 downloads last month - 6 stars on GitHub - 2 maintainers
countparticles 1.3
Report the number of particles in each class from RELION4 versions - Latest release: over 2 years ago - 1 dependent repositories - 43 downloads last month - 3 stars on GitHub - 1 maintainer
classconvergence 1.2
Plot the class distribution as a function of iteration from a Class2D or Class3D job from RELION3 versions - Latest release: over 2 years ago - 1 dependent repositories - 34 downloads last month - 3 stars on GitHub - 1 maintainer
starstack 0.2.4
A relion star mrcs stack class14 versions - Latest release: 3 months ago - 1 dependent package - 1 dependent repositories - 247 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-modelangelo 3.1.1
Scipion plugin for modelangelo.6 versions - Latest release: about 1 month ago - 66 downloads last month - 1 stars on GitHub - 1 maintainer
scipion-em-cryocare 4.1.0
Plugin to use cryoCARE inside scipion.7 versions - Latest release: about 1 month ago - 1 dependent repositories - 74 downloads last month - 2 stars on GitHub - 1 maintainer
scipion-em-xmippbase 23.11.0.0
Scipion pseudoplugin to deal with the shared xmipp protocols.1 version - Latest release: 4 months ago - 23 downloads last month - 0 stars on GitHub - 1 maintainer
angdist 1.3
Plot the 2D histogram of Euler angles covered by a set of cryo-EM particles4 versions - Latest release: over 2 years ago - 1 dependent repositories - 46 downloads last month - 5 stars on GitHub - 1 maintainer
scipion-em-pyseg 3.1.2
Scipion plugin for PySeg11 versions - Latest release: 6 months ago - 1 dependent repositories - 32 downloads last month - 2 stars on GitHub - 1 maintainer
scipion-em-ucm 1.0
Scipion plugin with map validations1 version - Latest release: about 2 years ago - 1 dependent repositories - 10 downloads last month - 0 stars on GitLab.com - 1 maintainer
Related Keywords
imageprocessing
31
scipion
30
scipion-3.0
25
tomo
7
cryo-em
7
relion
5
visualization
5
cryo-EM
5
atom
4
plot
4
spa
4
scipion-2.0
3
other
3
particle-picking
3
particle
2
cryoet
2
histogram
2
class
2
distribution
2
core
2
topaz
2
tomagraphy
1
3DBionotes
1
annotations
1
viewer
1
map
1
local
1
resolution
1
workflow
1
cryosparc
1
local-resolution
1
validation
1
orientations
1
visualiz
1
euler-angles
1
electron-microscopy
1
scientific-computing
1
science
1
image-processing
1
classification
1
star
1
stack
1
mrcs
1
modelling
1
angle
1
Euler
1
fair
1
Xmipp
1
modelangelo
1
estimation
1
pose
1
learning
1
deep
1
topaz-em
1
topaz-denoise
1
pytorch
1
object-detection
1
machine-learning
1
denoising
1
cnn
1
denoise
1
positive-unlabeled
1
CNN
1
cryoEM
1
xmipp
1
picking
1
localizedreconstruction
1
scipion-1.2
1
scipion-2
1
tomography
1
scale-transformations
1
rmsd
1
point-cloud-registration
1
point-cloud
1
clem
1
molecular-structure
1
structure-comparison
1
3d
1
registration
1
Topaz
1
prody-2.0
1
smartscope
1
screening
1