Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
pypi.org "cryo-em" keyword
scipion-em-imod 3.4.1
Plugin to use some of the Tomography tools from IMOD in Scipion27 versions - Latest release: 3 months ago - 3 dependent packages - 2 dependent repositories - 237 downloads last month - 1 stars on GitHub - 1 maintainer
tomotwin-cryoet 0.9.0
Picking procedure for cryo em tomography33 versions - Latest release: about 1 month ago - 535 downloads last month - 26 stars on GitHub - 1 maintainer
cctbx-base 2020.8
The Computational Crystallography Toolbox1 version - Latest release: over 3 years ago - 3 dependent repositories - 12 downloads last month - 202 stars on GitHub - 1 maintainer
cctbx 2020.8
The Computational Crystallography Toolbox1 version - Latest release: over 3 years ago - 1 dependent repositories - 18 downloads last month - 203 stars on GitHub - 1 maintainer
scipion-em-cistem 3.9.1
Plugin to use cisTEM programs within the Scipion framework24 versions - Latest release: about 19 hours ago - 1 dependent repositories - 324 downloads last month - 1 stars on GitHub - 2 maintainers
scipion-em-continuousflex 3.4.2
Plugin to use continuousflex protocols within the Scipion framework66 versions - Latest release: 7 months ago - 1 dependent repositories - 554 downloads last month - 6 stars on GitHub - 2 maintainers
scipion-em-reliontomo 3.4.0
Plugin to use Relion programs for tomography within the Scipion framework15 versions - Latest release: about 2 months ago - 1 dependent package - 1 dependent repositories - 156 downloads last month - 1 stars on GitHub - 1 maintainer
Top 8.6% on pypi.org
7 versions - Latest release: about 2 years ago - 3 dependent packages - 2 dependent repositories - 220 downloads last month - 162 stars on GitHub - 1 maintainer
topaz-em 0.2.5
Particle picking with positive-unlabeled CNNs7 versions - Latest release: about 2 years ago - 3 dependent packages - 2 dependent repositories - 220 downloads last month - 162 stars on GitHub - 1 maintainer
Top 8.9% on pypi.org
52 versions - Latest release: 2 days ago - 14 dependent packages - 22 dependent repositories - 494 downloads last month - 4 stars on GitHub - 2 maintainers
scipion-pyworkflow 3.6.0
Simple workflow platform used in scientific applications, initially developed within the Scipion ...52 versions - Latest release: 2 days ago - 14 dependent packages - 22 dependent repositories - 494 downloads last month - 4 stars on GitHub - 2 maintainers
scipion-em-tomo 3.6.1
Plugin to use electron tomography software within the Scipion framework32 versions - Latest release: about 2 months ago - 14 dependent packages - 13 dependent repositories - 382 downloads last month - 6 stars on GitHub - 1 maintainer
scipion-em-eman2 3.6.1
Plugin to use EMAN programs within the Scipion framework21 versions - Latest release: 27 days ago - 1 dependent package - 1 dependent repositories - 256 downloads last month - 1 stars on GitHub - 3 maintainers
emtable 0.0.14
Simple module to deal with EM tabular data (aka metadata)7 versions - Latest release: almost 2 years ago - 10 dependent packages - 17 dependent repositories - 602 downloads last month - 4 stars on GitHub - 2 maintainers
roodmus 0.0.32
Synthetic SP micrograph creation and analysis5 versions - Latest release: 17 days ago - 90 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-emready 3.0
EMReady: Improvement of cryo-EM maps by simultaneous local and non-local deep learning1 version - Latest release: 11 months ago - 10 downloads last month - 0 stars on GitHub - 1 maintainer
perfectem 0.9.2
Run TEM performance tests with SerialEM2 versions - Latest release: 12 months ago - 20 downloads last month - 1 stars on GitHub - 1 maintainer
imod2relion 1.1.0
A tool reading IMOD points, obtaining particles' info and generating .star file for RELION3 versions - Latest release: about 1 year ago - 24 downloads last month - 1 stars on GitHub - 1 maintainer
tbl2star 1.0.1
A tool converting DYNAMO table files(.tbl) to RELION star files(.star)2 versions - Latest release: about 1 year ago - 18 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-embuild 1.0.4
EMBuild: Model building of protein complexes from intermediate-resolution cryo-EM maps with deep ...5 versions - Latest release: about 1 year ago - 4 downloads last month - 1 maintainer
cryosparc-tools 4.5.0
Toolkit for interfacing with CryoSPARC11 versions - Latest release: 9 days ago - 3.38 thousand downloads last month - 26 stars on GitHub - 1 maintainer
scipion-em-warp 3.2.3
Plugin to use Warp within the Scipion framework8 versions - Latest release: 28 days ago - 118 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-susantomo 3.0b4
Plugin to use SUSAN within the Scipion framework4 versions - Latest release: 3 months ago - 39 downloads last month - 2 stars on GitHub - 2 maintainers
topaztrainmetrics 1.2
Plot metrics from a Topaz training run3 versions - Latest release: over 2 years ago - 1 dependent repositories - 33 downloads last month - 0 stars on GitHub - 1 maintainer
superpose3d 1.4.1
Diamond's 1988 rotational superposition algorithm (+scale tranforms)26 versions - Latest release: about 2 years ago - 1 dependent package - 2 dependent repositories - 225 downloads last month - 39 stars on GitHub - 1 maintainer
starparser 1.57
Manipulate and mine Relion star files.38 versions - Latest release: 4 days ago - 1 dependent repositories - 282 downloads last month - 17 stars on GitHub - 1 maintainer
scipion-em-topaz 3.0.2
Topaz ready to use in scipion.5 versions - Latest release: about 1 year ago - 1 dependent repositories - 49 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-xlmtools 1.0.0
Plugin to use xlmtools-Tools programs within the Scipion framework1 version - Latest release: over 2 years ago - 1 dependent repositories - 9 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-sidesplitter 3.0.12
Plugin to use SIDESPLITTER program within the Scipion framework13 versions - Latest release: 6 months ago - 1 dependent repositories - 64 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-spoc 1.0.6
Plugin to use SPOC programs within the Scipion framework7 versions - Latest release: almost 2 years ago - 1 dependent repositories - 79 downloads last month - 1 stars on GitHub - 1 maintainer
scipion-em-spider 3.1.7
Plugin to use Spider programs within the Scipion framework18 versions - Latest release: 6 months ago - 1 dependent repositories - 75 downloads last month - 0 stars on GitHub - 3 maintainers
scipion-em-sll 0.0.1
Scipion plugin for CryoEM tools developed at SciLifeLab1 version - Latest release: almost 5 years ago - 1 dependent repositories - 10 downloads last month - 1 maintainer
scipion-em-simple 1.0.3
Plugin to use Simple programs within the Scipion framework4 versions - Latest release: about 5 years ago - 1 dependent repositories - 12 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-resmap 3.0.3
Plugin to use ResMap program within the Scipion framework12 versions - Latest release: over 2 years ago - 1 dependent repositories - 45 downloads last month - 1 stars on GitHub - 2 maintainers
scipion-em-nysbc 1.0.3
Plugin to use NYSBC programs within the Scipion framework4 versions - Latest release: almost 5 years ago - 1 dependent repositories - 15 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-novactf 3.1.2
Plugin to use NovaCTF in Scipion9 versions - Latest release: 6 months ago - 1 dependent repositories - 105 downloads last month - 1 stars on GitHub - 1 maintainer
scipion-em-motioncorr 3.16.1
Plugin to use motioncor programs within the Scipion framework32 versions - Latest release: 3 months ago - 1 dependent repositories - 244 downloads last month - 1 stars on GitHub - 3 maintainers
scipion-em-locscale 3.0.5
Plugin to use Locscale program within the Scipion framework14 versions - Latest release: over 1 year ago - 1 dependent repositories - 65 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-gctf 3.1.3
Plugin to use Gctf program within the Scipion framework21 versions - Latest release: 6 months ago - 1 dependent repositories - 126 downloads last month - 2 stars on GitHub - 3 maintainers
scipion-em-imagic 3.0.13
Plugin to use IMAGIC programs within the Scipion framework15 versions - Latest release: 6 months ago - 1 dependent repositories - 64 downloads last month - 0 stars on GitHub - 3 maintainers
scipion-em-gautomatch 3.0.18
Plugin to use Gautomatch program within the Scipion framework19 versions - Latest release: 6 months ago - 1 dependent repositories - 67 downloads last month - 2 stars on GitHub - 3 maintainers
scipion-em-fsc3d 3.2.1
Plugin to use 3DFSC within the Scipion framework10 versions - Latest release: 6 months ago - 1 dependent repositories - 57 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-cryoef 3.0.15
Plugin to use Cryoef program within the Scipion framework16 versions - Latest release: 6 months ago - 1 dependent repositories - 65 downloads last month - 0 stars on GitHub - 3 maintainers
scipion-em-cryodrgn 3.12.2
Plugin to use cryoDRGN within the Scipion framework26 versions - Latest release: about 2 months ago - 1 dependent repositories - 48 downloads last month - 1 stars on GitHub - 2 maintainers
scipion-em-atsas 3.0.2
Plugin to use ATSAS programs within the Scipion framework11 versions - Latest release: over 3 years ago - 1 dependent repositories - 17 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-bamfordlab 3.0.0
Plugin to use Bamfordlab programs within the Scipion framework7 versions - Latest release: almost 4 years ago - 1 dependent repositories - 5 downloads last month - 0 stars on GitHub - 1 maintainer
scipion-em-bsoft 3.0.6
Plugin to use Cryoef program within the Scipion framework11 versions - Latest release: over 2 years ago - 1 dependent repositories - 53 downloads last month - 2 stars on GitHub - 1 maintainer
scipion-em-aretomo 3.9.0
Plugin to use AreTomo program within the Scipion framework36 versions - Latest release: 2 months ago - 1 dependent repositories - 79 downloads last month - 1 stars on GitHub - 2 maintainers
mdcatch 0.9.10
Fetch metadata from EPU / SerialEM and launch on-the-fly pre-processing19 versions - Latest release: over 3 years ago - 1 dependent repositories - 108 downloads last month - 9 stars on GitHub - 1 maintainer
localres 1.7
Plot the histogram of local resolution values of a cryo-EM reconstruction8 versions - Latest release: over 2 years ago - 1 dependent repositories - 46 downloads last month - 4 stars on GitHub - 1 maintainer
focustools 0.2.3
Python utilities supporting the FOCUS package and cryo-EM data processing in general.9 versions - Latest release: over 4 years ago - 1 dependent repositories - 83 downloads last month - 5 stars on GitHub - 1 maintainer
countparticles 1.3
Report the number of particles in each class from RELION4 versions - Latest release: over 2 years ago - 1 dependent repositories - 43 downloads last month - 3 stars on GitHub - 1 maintainer
classconvergence 1.2
Plot the class distribution as a function of iteration from a Class2D or Class3D job from RELION3 versions - Latest release: over 2 years ago - 1 dependent repositories - 34 downloads last month - 3 stars on GitHub - 1 maintainer
scipion-em-dynamo 3.1.21
Plugin to use DYNAMO within the Scipion framework22 versions - Latest release: 6 months ago - 1 dependent repositories - 142 downloads last month - 1 stars on GitHub - 1 maintainer
scipion-em-sphire 3.1.14
Plugin to use Sphire programs within the Scipion framework36 versions - Latest release: 3 months ago - 1 dependent repositories - 182 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-tomotwin 3.0.1
Plugin to use TomoTwin within the Scipion framework10 versions - Latest release: about 1 year ago - 39 downloads last month - 1 stars on GitHub - 2 maintainers
scipion-em-emantomo 3.3.1
Plugin to use EMAN2 tomography programs within the Scipion framework14 versions - Latest release: about 2 months ago - 1 dependent repositories - 161 downloads last month - 2 stars on GitHub - 1 maintainer
scipion-em-cryoassess 3.1.1
Plugin to use cryoassess within the Scipion framework10 versions - Latest release: over 1 year ago - 1 dependent repositories - 63 downloads last month - 0 stars on GitHub - 2 maintainers
scipion-em-cryosparc2 4.1.0
Plugin to use cryoSPARC2 programs within the Scipion framework82 versions - Latest release: 17 days ago - 1 dependent repositories - 353 downloads last month - 2 stars on GitHub - 1 maintainer
angdist 1.3
Plot the 2D histogram of Euler angles covered by a set of cryo-EM particles4 versions - Latest release: over 2 years ago - 1 dependent repositories - 46 downloads last month - 5 stars on GitHub - 1 maintainer
deepmuon 1.23.51
Interdisciplinary Deep Learning Platform12 versions - Latest release: about 1 year ago - 72 downloads last month - 1 stars on GitHub - 1 maintainer
emtools 0.0.11
Utilities for CryoEM data manipulation10 versions - Latest release: 2 months ago - 1 dependent package - 103 downloads last month - 6 stars on GitHub - 1 maintainer
scipion-em-relion 4.0.20
Plugin to use Relion programs within the Scipion framework61 versions - Latest release: 2 months ago - 4 dependent packages - 6 dependent repositories - 335 downloads last month - 3 stars on GitHub - 3 maintainers
emcore 0.0.5
Python module to access functionality in the emcore library2 versions - Latest release: about 4 years ago - 1 dependent repositories - 17 downloads last month - 4 stars on GitHub - 1 maintainer
Related Keywords
image-processing
45
electron-microscopy
42
structural-biology
41
scipion
38
scipion-3.0
35
spa
23
tomo
15
relion
7
cryoem
7
cryo-EM
6
visualization
5
plot
4
subtomogram-averaging
4
cryo-et
4
cryosparc
3
python
3
cryo-tomography
3
particle-picking
3
scipion-2.0
2
deep-learning
2
histogram
2
imod
2
serialem
2
cctbx
2
tomography
2
single-particle
2
class
2
distribution
2
cryoEM
2
phenix
2
topaz
2
crystallography
2
materials-science
1
local-resolution
1
resolution
1
local
1
map
1
epu
1
medicine
1
qt6
1
physics
1
atom
1
novactf
1
scale-transformations
1
rmsd
1
point-cloud-registration
1
visualiz
1
focus
1
interdiscip
1
data-visualization
1
Direct and Simple
1
3d-reconstruction
1
compression-application
1
signal-processing
1
particle
1
Searching Dark Matter
1
Deep Learning
1
classification
1
Euler
1
angle
1
euler-angles
1
orientations
1
analysis
1
micrographs
1
parakeet
1
core
1
science
1
workflows
1
topaz-em
1
topaz-denoise
1
pytorch
1
object-detection
1
machine-learning
1
denoising
1
cnn
1
denoise
1
positive-unlabeled
1
CNN
1
electron-tomography
1
continuous-conformational-variability
1
point-cloud
1
clem
1
molecular-structure
1
structure-comparison
1
3d
1
registration
1
Topaz
1
molecular-biology
1
high-performance-computing
1
cryosparc-tools
1
metric-learning
1
c
1
embuild
1
starfiles
1
dynamo
1
starfile
1
emready
1
roodmus
1