python 10 markov-chain 9 molecular-dynamics 6 analysis 6 hmm 5 hidden-markov-model 4 markov-chains 4 tica 4 markov-state-model 4 clustering 4 dimensionality-reduction 3 markov-models 3 feature-extraction 3 msmbuilder 3 pca 3 markov 3 probabilistic-models 3 Markov 3 probability 2 statistics 2 simulation 2 Algorithms 2 markov chain 2 mathematics 2 Model 2 text-generation 2 State 2 stochastic-processes 2 marketing 2 attribution 2 kinetic-modeling 1 hidden-markov-models 1 mbar 1 markov-state-models 1 molecular-modeling 1 weighted-ensemble 1 msm_we 1 msm 1 time-series 1 umbrella-sampling 1 text-generator 1 markov-text 1 corpus 1 nlp 1 model 1 internetarchive 1 text 1 mtd 1 hmm-viterbi-algorithm 1 baum-welch-algorithm 1 hidden markov models 1 markov chains 1 markov-modelling 1 json 1 statistical-models 1 statistical-analysis 1 plotting 1 mathematical-models 1 mathematical-analysis 1 fitting 1 stochastic-process 1 gillespie-algorithm 1 dynamical-systems 1 biological-modeling 1 biological-data-analysis 1 bayesian-inference 1 maths 1 mathematical-modelling 1 markov-processes 1 markov-process 1 markov model 1 twitter 1 scraper 1 reddit 1 nltk-python 1 markovify 1 discord 1 cli 1 scikit-learn 1 density-based-clustering 1 common-nearest-neighbours 1 Density-based 1 bayesian-methods 1 shapley 1 coherent-set-detection 1 koopman-operator 1 covariance-estimation 1 time-series-analysis 1 Chain 1 generalized-additive-models 1 generalized-additive-mixed-models 1 gams 1 pytorch-lightning 1 pytorch 1 machine-learning 1 kmeans 1 gaussian-mixture-models 1 stochastic-models 1 statistical-inference 1 parameter-estimation 1