python 115 directory 34 graph 31 structure 26 python3 21 visualization 20 parser 18 data 17 tree-structure 17 machine-learning 16 json 16 data-structures 16 cli 15 node 14 django 13 file 13 search 12 parse 12 taxonomy 12 bioinformatics 11 syntax 11 data structure 11 dict 11 list 10 network 10 dictionary 10 pip 9 algorithm 9 terminal 9 phylogenetics 9 phylogeny 9 hierarchy 9 parsing 9 path 9 recursive 8 trie 8 dependency 8 filesystem 8 grammar 8 trees 8 lark 7 earley 7 folder 7 data-structure 7 decision 7 yaml 7 newick 7 html 7 widget 6 query 6 scikit-learn 6 cyk 6 diff 6 svg 6 graphviz 6 hash 6 lalr 6 dag 6 radix 6 parsing-library 6 parsing-engine 6 generator 6 traverse 6 ascii 6 parser-library 6 ast 6 carlo 5 data structures 5 monte 5 dom 5 phylogenetic 5 classification 5 mcts 5 bst 5 distance 5 browser 5 queue 5 git 5 abstract 5 javascript 5 stack 5 package 5 subtree-extraction 5 subtree-query 5 subtree 5 ncbi-taxonomy 5 segment 5 nested 5 array 5 numpy 5 binary 5 dependencies 5 forest 5 random-forest 5 print 5 machine 5 framework 5 xml 5 trac 5 pretty-print 5