Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
spack.io "assembly" keyword
hipblaslt 6.0.2
hipBLASLt is a library that provides general matrix-matrix operations with a flexible API and ext...2 versions - Latest release: 7 days ago - 33 stars on GitHub - 3 maintainers
getorganelle 1.7.5.0
Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)2 versions - Latest release: over 1 year ago - 191 stars on GitHub - 1 maintainer
redundans 0.13c
Redundans pipeline assists an assembly of heterozygous genomes.2 versions - Latest release: about 2 years ago - 99 stars on GitHub
py-drep 3.4.2
dRep is a python program for rapidly comparing large numbers of genomes. dRep can also "de-replic...2 versions - Latest release: about 1 year ago - 172 stars on GitHub - 1 maintainer
soapdenovo2 240
SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for the ...2 versions - Latest release: about 2 years ago - 189 stars on GitHub - 1 maintainer
rocm-tensile 6.0.2
Radeon Open Compute Tensile library31 versions - Latest release: 2 months ago - 173 stars on GitHub - 3 maintainers
py-ipyrad 0.9.93
An interactive toolkit for assembly and analysis of restriction-site associated genomic data sets...5 versions - Latest release: 2 months ago - 63 stars on GitHub - 1 maintainer
py-peachpy master
Portable Efficient Assembly Codegen in Higher-level Python.1 version - Latest release: about 2 years ago - 1,740 stars on GitHub - 1 maintainer
wtdbg2 2.3
A fuzzy Bruijn graph approach to long noisy reads assembly1 version - Latest release: about 2 years ago - 467 stars on GitHub
py-getorganelle 1.7.5.0 removed
Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)1 version - Latest release: about 2 years ago - 190 stars on GitHub - 3 maintainers
Related Keywords
python
3
bioinformatics
3
genomics
2
ribosomal
2
plastome
2
mitogenome
2
mitochondria
2
its
2
genome-skimming-data
2
fastg
2
chloroplast
2
radeon-open-compute
2
matrix-multiplication
2
machine-learning
2
hip
2
gpu-computing
2
gemm
2
amd
2
blas
2
radeon
1
opencl
1
neural-networks
1
gpu-acceleration
1
gpu
1
dnn
1
auto-tuning
1
soapdenovo
1
rocm
1
tensor-contraction
1
tensors
1
phylogeny
1
rad-seq
1
assembler
1
compiler
1
x86-64
1
alignment
1
nanopore
1
pacbio
1
assembled-contigs
1
closing
1
contigs
1
docker-image
1
fasta
1
gap
1
genome-assembly
1
heterozygous
1
mate-pairs
1
paired-end
1
pipeline
1
polymorphic
1
scaffolding
1
metagenomics
1
microbial-genomes
1
microbiology
1
computational-biology
1
genome
1