Ecosyste.ms: Packages
An open API service providing package, version and dependency metadata of many open source software ecosystems and registries.
spack.io "metagenomics" keyword
py-gtdbtk 2.3.2
GTDB-Tk is a software toolkit for assigning objective taxonomic classifications to bacterial and ...3 versions - Latest release: 8 months ago - 327 stars on GitHub - 1 maintainer
mmseqs2 13-45111
MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge pro...2 versions - Latest release: over 1 year ago - 2 dependent packages - 900 stars on GitHub
Top 7.7% on spack.io
4 versions - Latest release: over 1 year ago - 5 dependent packages - 556 stars on GitHub - 1 maintainer
vsearch 2.22.1
VSEARCH is a versatile open-source tool for metagenomics.4 versions - Latest release: over 1 year ago - 5 dependent packages - 556 stars on GitHub - 1 maintainer
py-metaphlan 4.0.2
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteri...2 versions - Latest release: over 1 year ago - 180 stars on GitHub - 1 maintainer
megahit 1.1.4
MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succi...2 versions - Latest release: about 2 years ago - 448 stars on GitHub
kaiju 1.6.2
Kaiju is a program for the taxonomic classification of high-throughput sequencing reads.1 version - Latest release: about 2 years ago - 212 stars on GitHub
py-drep 3.4.2
dRep is a python program for rapidly comparing large numbers of genomes. dRep can also "de-replic...2 versions - Latest release: about 1 year ago - 172 stars on GitHub - 1 maintainer
Related Keywords
bioinformatics
6
taxonomy
3
metabarcoding
1
microbiome
1
search
1
sequence-alignment
1
biobakery
1
public
1
python
1
tools
1
data-structures
1
genome-assembly
1
genomics
1
succinct
1
next-generation-sequencing
1
taxonomic-classification
1
assembly
1
microbial-genomes
1
microbiology
1
archaea
1
bacteria
1
nomenclature
1
phylogenetics
1
species-assignments
1
alignment
1
blast
1
linclust
1
mmseqs
1
profile-search
1
sequence-clustering
1
sequence-search
1
amplicon
1
chimera
1
clustering
1
fasta
1
fastq
1